Wall clock time and date at job start Mon Mar 30 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50652 * 2 1 4 4 C 1.53050 * 109.48928 * 239.94411 * 2 1 3 5 5 N 1.46957 * 109.36083 * 181.63194 * 4 2 1 6 6 C 1.46907 * 110.99741 * 183.18716 * 5 4 2 7 7 C 1.52997 * 109.47135 * 190.00498 * 6 5 4 8 8 N 1.46898 * 109.47352 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00498 * 169.99277 * 8 7 6 10 10 C 1.46908 * 110.99537 * 293.95144 * 8 7 6 11 11 C 1.46956 * 110.89949 * 59.31106 * 5 4 2 12 12 C 1.53050 * 109.36346 * 300.71068 * 11 5 4 13 13 H 1.09001 * 109.48575 * 298.38827 * 12 11 5 14 14 C 1.50706 * 109.48677 * 178.34732 * 12 11 5 15 15 H 1.07995 * 120.00167 * 359.76419 * 14 12 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 N 1.46954 * 109.38225 * 58.37170 * 12 11 5 23 23 H 1.08999 * 109.47204 * 299.94413 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.94685 * 1 2 3 25 25 H 1.09003 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.48624 * 301.59710 * 4 2 1 27 27 H 1.08992 * 109.48813 * 61.64261 * 4 2 1 28 28 H 1.09003 * 109.46702 * 310.00367 * 6 5 4 29 29 H 1.08996 * 109.46606 * 70.00118 * 6 5 4 30 30 H 1.09007 * 109.46851 * 299.99852 * 7 6 5 31 31 H 1.08995 * 109.47413 * 59.99802 * 7 6 5 32 32 H 1.09000 * 109.46447 * 59.99869 * 9 8 7 33 33 H 1.08999 * 109.47114 * 179.97438 * 9 8 7 34 34 H 1.08992 * 109.47063 * 300.00307 * 9 8 7 35 35 H 1.08993 * 109.47063 * 60.00033 * 10 8 7 36 36 H 1.08995 * 109.46673 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47009 * 299.99643 * 10 8 7 38 38 H 1.08997 * 109.50970 * 180.73055 * 11 5 4 39 39 H 1.09002 * 109.47205 * 60.66471 * 11 5 4 40 40 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 41 41 H 1.00903 * 110.99832 * 176.82884 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5097 -0.7552 -1.2263 6 6 4.0412 -1.3752 -2.4475 7 6 5.5428 -1.6187 -2.2839 8 7 6.0744 -2.2381 -3.5052 9 6 7.5428 -2.2706 -3.4828 10 6 5.5207 -3.5853 -3.6961 11 6 4.0004 -1.4487 -0.0272 12 6 3.4892 -0.7265 1.2216 13 1 3.8755 0.2927 1.2358 14 6 3.9572 -1.4588 2.4528 15 1 4.5558 -2.3523 2.3548 16 6 3.6165 -0.9909 3.7043 17 7 2.8829 0.0941 3.8235 18 14 4.1972 -1.8982 5.2304 19 1 5.6815 -1.9316 5.2517 20 1 3.6999 -1.1978 6.4418 21 1 3.6710 -3.2867 5.2111 22 7 2.0202 -0.6939 1.1992 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6544 -1.7419 -1.2626 27 1 1.7019 -0.1932 -2.1393 28 1 3.5360 -2.3252 -2.6221 29 1 3.8708 -0.7118 -3.2954 30 1 6.0479 -0.6686 -2.1092 31 1 5.7131 -2.2820 -1.4359 32 1 7.8802 -2.8486 -2.6224 33 1 7.9100 -2.7345 -4.3983 34 1 7.9277 -1.2535 -3.4108 35 1 4.4357 -3.5238 -3.7792 36 1 5.9304 -4.0207 -4.6074 37 1 5.7849 -4.2109 -2.8435 38 1 5.0903 -1.4485 -0.0270 39 1 3.6367 -2.4763 -0.0274 40 1 2.6430 0.4230 4.7039 41 1 1.6552 -0.2680 2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:30 Heat of formation + Delta-G solvation = -8.576543 kcal Electronic energy + Delta-G solvation = -18394.467707 eV Core-core repulsion = 15729.281726 eV Total energy + Delta-G solvation = -2665.185981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26787 -38.37209 -35.80517 -34.85361 -32.49418 -30.29950 -28.54395 -28.40230 -27.13643 -25.96762 -23.47536 -22.84325 -21.19163 -20.37862 -18.54915 -17.38382 -16.74232 -16.41555 -16.37708 -15.89821 -15.68161 -15.35592 -15.09919 -14.79998 -14.41204 -14.00765 -13.50805 -13.36018 -13.16942 -12.93669 -12.83546 -12.71489 -12.62128 -12.58464 -12.41888 -12.18045 -12.10274 -11.87157 -11.60639 -11.22076 -11.04291 -10.64635 -9.38314 -9.22138 -8.78660 -8.18550 -6.30103 1.41721 1.43602 1.51231 2.40590 2.74266 3.07424 3.33462 3.87645 3.94582 4.03004 4.10720 4.27007 4.39319 4.43152 4.46895 4.52811 4.56634 4.58578 4.64906 4.72237 4.78798 4.83884 4.89226 4.93149 4.99386 5.01140 5.02162 5.19561 5.24590 5.31010 5.48942 5.75119 5.93140 5.99907 6.06647 6.23390 6.29028 6.62175 6.97734 7.12167 7.41826 8.90804 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.007028 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.224423 B = 3983.286473 C = 5105.948900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 H 0.008 0.992 4 C 0.076 3.924 5 N -0.553 5.553 6 C 0.068 3.932 7 C 0.059 3.941 8 N -0.553 5.553 9 C 0.024 3.976 10 C 0.020 3.980 11 C 0.084 3.916 12 C 0.220 3.780 13 H -0.041 1.041 14 C -0.532 4.532 15 H 0.055 0.945 16 C 0.023 3.977 17 N -0.922 5.922 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.273 1.273 22 N -0.687 5.687 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.018 0.982 38 H 0.066 0.934 39 H 0.014 0.986 40 H 0.266 0.734 41 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -3.943 -13.162 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.039 4.039 3 H 0.026 0.974 4 C -0.052 4.052 5 N -0.278 5.278 6 C -0.059 4.059 7 C -0.069 4.069 8 N -0.277 5.277 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.044 4.044 12 C 0.112 3.888 13 H -0.023 1.023 14 C -0.571 4.571 15 H 0.073 0.927 16 C -0.177 4.177 17 N -0.562 5.562 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.198 1.198 22 N -0.323 5.323 23 H 0.064 0.936 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.955 -3.680 -13.707 14.327 hybrid contribution 0.449 -0.585 2.083 2.210 sum 2.404 -4.265 -11.624 12.613 Atomic orbital electron populations 1.21659 0.92925 1.02119 1.01912 1.21610 0.95965 0.94329 0.92043 0.97406 1.22104 0.86506 0.98857 0.97712 1.62205 1.09230 1.53986 1.02353 1.22031 0.94011 0.97608 0.92289 1.22135 0.95344 0.99236 0.90232 1.61961 1.08202 1.21137 1.36445 1.22437 0.86167 1.02368 1.01411 1.22491 1.00961 0.88236 1.01084 1.22049 0.98444 0.94424 0.89465 1.18903 0.85597 0.92301 0.92029 1.02318 1.21383 1.32642 1.11491 0.91567 0.92704 1.25741 0.94636 0.95355 1.01934 1.69792 1.38419 1.23340 1.24686 0.85537 0.78619 0.78660 0.78305 1.19680 1.20692 1.19799 1.61052 1.10227 1.56374 1.04610 0.93580 0.90099 0.92296 0.95149 0.88929 0.94926 0.89408 0.90780 0.95676 0.96037 0.89489 0.91067 0.91370 0.89475 0.96301 0.91615 0.96761 0.92483 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.46 71.98 0.68 -3.51 16 2 C 0.07 2.92 3.19 44.92 0.14 3.06 16 3 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 4 C 0.08 2.74 4.86 86.31 0.42 3.16 16 5 N -0.55 -21.07 4.86 -895.71 -4.35 -25.42 16 6 C 0.07 2.09 5.20 86.30 0.45 2.54 16 7 C 0.06 1.73 4.22 86.30 0.36 2.09 16 8 N -0.55 -13.54 5.02 -948.88 -4.76 -18.30 16 9 C 0.02 0.49 9.57 127.69 1.22 1.71 16 10 C 0.02 0.43 9.32 127.69 1.19 1.63 16 11 C 0.08 3.77 4.15 86.31 0.36 4.13 16 12 C 0.22 11.72 2.55 44.18 0.11 11.84 16 13 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 14 C -0.53 -30.08 8.76 25.60 0.22 -29.86 16 15 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.02 1.27 5.35 84.66 0.45 1.72 16 17 N -0.92 -53.02 11.49 21.45 0.25 -52.77 16 18 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 N -0.69 -34.33 6.17 -472.86 -2.92 -37.25 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.03 0.97 6.49 -2.39 -0.02 0.96 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.29 8.06 -2.38 -0.02 2.27 16 31 H 0.03 0.83 6.24 -2.39 -0.01 0.81 16 32 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 35 H 0.07 1.47 6.47 -2.39 -0.02 1.46 16 36 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 37 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.07 2.88 6.00 -2.39 -0.01 2.86 16 39 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.35 18.96 6.65 -89.69 -0.60 18.37 16 Total: -1.00 -61.39 314.92 -3.76 -65.15 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.38 Total: 24.20 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.62 Total: -1.49 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -11.79 Total: -133.75 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.39 -3.76 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.574 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds