Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49044 * 2 1 4 4 C 1.53049 * 109.49018 * 120.04117 * 2 1 3 5 5 N 1.46958 * 109.36597 * 61.56822 * 4 2 1 6 6 C 1.46893 * 111.00274 * 183.18849 * 5 4 2 7 7 C 1.53000 * 109.47164 * 190.00232 * 6 5 4 8 8 N 1.46896 * 109.46908 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00079 * 169.99790 * 8 7 6 10 10 C 1.46904 * 110.99878 * 293.94502 * 8 7 6 11 11 C 1.46964 * 110.87882 * 59.31547 * 5 4 2 12 12 C 1.53049 * 109.36860 * 300.68297 * 11 5 4 13 13 H 1.08999 * 109.48895 * 298.43522 * 12 11 5 14 14 C 1.50693 * 109.49163 * 178.38805 * 12 11 5 15 15 H 1.08005 * 119.99846 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00354 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00311 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 120.00018 * 0.02562 * 16 14 12 19 19 H 1.48507 * 109.47189 * 89.99851 * 18 16 14 20 20 H 1.48493 * 109.47526 * 209.99947 * 18 16 14 21 21 H 1.48503 * 109.47271 * 330.00067 * 18 16 14 22 22 N 1.46958 * 109.36263 * 58.40176 * 12 11 5 23 23 H 1.09002 * 109.47153 * 299.95663 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.95836 * 1 2 3 26 26 H 1.08999 * 109.48895 * 181.53263 * 4 2 1 27 27 H 1.08999 * 109.49058 * 301.57267 * 4 2 1 28 28 H 1.08999 * 109.46997 * 309.99672 * 6 5 4 29 29 H 1.08994 * 109.47186 * 69.99857 * 6 5 4 30 30 H 1.08999 * 109.46706 * 299.99618 * 7 6 5 31 31 H 1.08994 * 109.47376 * 59.99740 * 7 6 5 32 32 H 1.09000 * 109.47385 * 59.99544 * 9 8 7 33 33 H 1.09000 * 109.47633 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.46843 * 299.99961 * 9 8 7 35 35 H 1.09003 * 109.46951 * 60.00681 * 10 8 7 36 36 H 1.08998 * 109.47246 * 180.02562 * 10 8 7 37 37 H 1.08994 * 109.46977 * 300.00353 * 10 8 7 38 38 H 1.09000 * 109.48601 * 60.65132 * 11 5 4 39 39 H 1.08997 * 109.48394 * 180.71242 * 11 5 4 40 40 H 0.96994 * 120.00252 * 180.02562 * 17 16 14 41 41 H 1.00901 * 111.00143 * 176.81169 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 1.2490 5 7 1.5809 -2.1180 1.2269 6 6 1.9878 -2.8256 2.4482 7 6 1.7159 -4.3224 2.2849 8 7 2.1222 -5.0299 3.5065 9 6 1.6626 -6.4250 3.4844 10 6 3.5770 -4.9579 3.6973 11 6 2.0712 -2.8120 0.0279 12 6 1.5605 -2.0897 -1.2211 13 1 0.4709 -2.1135 -1.2349 14 6 2.0941 -2.7758 -2.4522 15 1 2.7332 -3.6409 -2.3540 16 6 1.7656 -2.2999 -3.7037 17 7 2.2308 -2.8989 -4.7781 18 14 0.6596 -0.8041 -3.8735 19 1 1.4910 0.4262 -3.8965 20 1 -0.1149 -0.9018 -5.1367 21 1 -0.2766 -0.7474 -2.7221 22 7 2.0203 -0.6941 -1.1990 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5145 -0.8896 26 1 3.1303 -0.6986 1.2628 27 1 1.6548 -0.2260 2.1394 28 1 3.0519 -2.6667 2.6228 29 1 1.4194 -2.4434 3.2960 30 1 0.6517 -4.4813 2.1104 31 1 2.2842 -4.7046 1.4371 32 1 2.0947 -6.9364 2.6242 33 1 1.9772 -6.9258 4.4000 34 1 0.5752 -6.4482 3.4123 35 1 3.8814 -3.9145 3.7802 36 1 3.8507 -5.4900 4.6084 37 1 4.0783 -5.4161 2.8448 38 1 3.1612 -2.8120 0.0279 39 1 1.7072 -3.8394 0.0282 40 1 2.0000 -2.5639 -5.6586 41 1 1.7409 -0.2080 -2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = 27.357042 kcal Electronic energy + Delta-G solvation = -18673.231234 eV Core-core repulsion = 16009.603450 eV Total energy + Delta-G solvation = -2663.627784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.11483 -37.37034 -34.43663 -32.90898 -30.85725 -29.12172 -27.61737 -26.98356 -25.40448 -24.90508 -22.47918 -21.29518 -20.24726 -18.22367 -16.89642 -16.27947 -15.50467 -15.32925 -14.85032 -14.43742 -14.23486 -13.99164 -13.55772 -13.51126 -13.17825 -12.65467 -12.49772 -12.39613 -11.85549 -11.75277 -11.71633 -11.34522 -11.26729 -11.10237 -10.90624 -10.68350 -10.59629 -10.04849 -9.91453 -9.46804 -9.25227 -8.65846 -8.34913 -7.83553 -7.35779 -6.13556 -4.13652 3.19869 3.27169 3.31050 3.83459 4.31771 4.56762 4.92645 5.07711 5.13293 5.21774 5.37018 5.39741 5.42003 5.52516 5.60255 5.70203 5.72296 5.80938 5.81747 5.88106 5.93718 6.03837 6.11241 6.14702 6.23761 6.33184 6.39432 6.43761 6.68726 6.77547 6.99130 6.99766 7.14761 7.41230 7.55714 7.66781 8.17530 8.29775 8.50774 8.90044 9.47708 10.99546 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.007049 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.899687 B = 3971.297975 C = 4622.941692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 H 0.070 0.930 4 C 0.073 3.927 5 N -0.541 5.541 6 C 0.063 3.937 7 C 0.050 3.950 8 N -0.549 5.549 9 C 0.026 3.974 10 C 0.021 3.979 11 C 0.073 3.927 12 C 0.183 3.817 13 H 0.013 0.987 14 C -0.503 4.503 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.869 3.131 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.262 1.262 22 N -0.679 5.679 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.265 0.735 41 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -0.005 14.931 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.036 4.036 3 H 0.088 0.912 4 C -0.056 4.056 5 N -0.266 5.266 6 C -0.065 4.065 7 C -0.078 4.078 8 N -0.273 5.273 9 C -0.123 4.123 10 C -0.128 4.128 11 C -0.054 4.054 12 C 0.075 3.925 13 H 0.030 0.970 14 C -0.542 4.542 15 H 0.095 0.905 16 C -0.127 4.127 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.187 1.187 22 N -0.316 5.316 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.460 0.062 15.382 15.451 hybrid contribution -0.151 0.579 -1.188 1.331 sum -1.611 0.641 14.193 14.299 Atomic orbital electron populations 1.22442 0.97947 1.03133 1.00092 1.21634 0.92840 0.96964 0.92204 0.91213 1.22008 0.97553 0.88876 0.97136 1.62245 1.59922 1.02147 1.02290 1.22010 0.98156 0.92963 0.93418 1.22312 1.01724 0.93840 0.89922 1.61937 1.13255 1.14148 1.37953 1.22358 1.01058 0.88299 1.00565 1.22438 0.87597 1.02343 1.00402 1.22221 0.97422 0.97335 0.88419 1.19643 0.94372 0.84787 0.93649 0.96984 1.20969 1.31234 1.13704 0.88327 0.90509 1.24957 0.95447 0.96384 0.95882 1.69874 1.44894 1.40638 0.97960 0.87106 0.81404 0.83871 0.77774 1.20002 1.21857 1.18669 1.61502 1.63215 1.04564 1.02311 0.93367 0.90778 0.94040 0.94608 0.91482 0.95354 0.90646 0.89939 0.93740 0.95549 0.91617 0.91301 0.91201 0.91695 0.95544 0.94895 0.90927 0.92523 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.66 37.16 0.32 -2.82 16 2 C 0.07 1.38 3.70 -67.65 -0.25 1.13 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.07 1.22 5.01 -3.77 -0.02 1.20 16 5 N -0.54 -9.47 4.18 -234.47 -0.98 -10.44 16 6 C 0.06 0.93 5.20 -3.83 -0.02 0.91 16 7 C 0.05 0.71 4.22 -3.83 -0.02 0.69 16 8 N -0.55 -6.89 5.02 -251.26 -1.26 -8.15 16 9 C 0.03 0.27 9.57 60.07 0.57 0.85 16 10 C 0.02 0.23 9.32 60.07 0.56 0.79 16 11 C 0.07 1.52 4.15 -3.76 -0.02 1.50 16 12 C 0.18 4.36 1.68 -68.81 -0.12 4.24 16 13 H 0.01 0.32 5.40 -51.93 -0.28 0.04 16 14 C -0.50 -14.13 9.34 -34.45 -0.32 -14.45 16 15 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 17 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 18 Si 0.87 21.31 24.66 -169.99 -4.19 17.12 16 19 H -0.27 -6.52 6.97 56.52 0.39 -6.13 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.16 5.74 56.52 0.32 -5.83 16 22 N -0.68 -15.35 6.28 -100.82 -0.63 -15.99 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.45 5.94 -51.93 -0.31 1.14 16 25 H 0.04 0.75 7.53 -51.93 -0.39 0.36 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.42 6.49 -51.93 -0.34 0.08 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.04 0.70 6.24 -51.93 -0.32 0.38 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 36 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.47 5.99 -51.93 -0.31 1.16 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.32 7.57 3.99 -39.29 -0.16 7.41 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -29.62 302.13 -8.29 -37.91 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.15 Total: 5.31 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 0.60 Total: -3.88 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -2.10 Total: -61.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.19 Total: 17.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.62 -8.29 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.266 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds