Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49044 * 2 1 4 4 C 1.53049 * 109.49018 * 120.04117 * 2 1 3 5 5 N 1.46958 * 109.36597 * 61.56822 * 4 2 1 6 6 C 1.46893 * 111.00274 * 183.18849 * 5 4 2 7 7 C 1.53000 * 109.47164 * 190.00232 * 6 5 4 8 8 N 1.46896 * 109.46908 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00079 * 169.99790 * 8 7 6 10 10 C 1.46904 * 110.99878 * 293.94502 * 8 7 6 11 11 C 1.46964 * 110.87882 * 59.31547 * 5 4 2 12 12 C 1.53049 * 109.36860 * 300.68297 * 11 5 4 13 13 H 1.08999 * 109.48895 * 298.43522 * 12 11 5 14 14 C 1.50693 * 109.49163 * 178.38805 * 12 11 5 15 15 H 1.08005 * 119.99846 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00354 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00311 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 120.00018 * 0.02562 * 16 14 12 19 19 H 1.48507 * 109.47189 * 89.99851 * 18 16 14 20 20 H 1.48493 * 109.47526 * 209.99947 * 18 16 14 21 21 H 1.48503 * 109.47271 * 330.00067 * 18 16 14 22 22 N 1.46958 * 109.36263 * 58.40176 * 12 11 5 23 23 H 1.09002 * 109.47153 * 299.95663 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.95836 * 1 2 3 26 26 H 1.08999 * 109.48895 * 181.53263 * 4 2 1 27 27 H 1.08999 * 109.49058 * 301.57267 * 4 2 1 28 28 H 1.08999 * 109.46997 * 309.99672 * 6 5 4 29 29 H 1.08994 * 109.47186 * 69.99857 * 6 5 4 30 30 H 1.08999 * 109.46706 * 299.99618 * 7 6 5 31 31 H 1.08994 * 109.47376 * 59.99740 * 7 6 5 32 32 H 1.09000 * 109.47385 * 59.99544 * 9 8 7 33 33 H 1.09000 * 109.47633 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.46843 * 299.99961 * 9 8 7 35 35 H 1.09003 * 109.46951 * 60.00681 * 10 8 7 36 36 H 1.08998 * 109.47246 * 180.02562 * 10 8 7 37 37 H 1.08994 * 109.46977 * 300.00353 * 10 8 7 38 38 H 1.09000 * 109.48601 * 60.65132 * 11 5 4 39 39 H 1.08997 * 109.48394 * 180.71242 * 11 5 4 40 40 H 0.96994 * 120.00252 * 180.02562 * 17 16 14 41 41 H 1.00901 * 111.00143 * 176.81169 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 1.2490 5 7 1.5809 -2.1180 1.2269 6 6 1.9878 -2.8256 2.4482 7 6 1.7159 -4.3224 2.2849 8 7 2.1222 -5.0299 3.5065 9 6 1.6626 -6.4250 3.4844 10 6 3.5770 -4.9579 3.6973 11 6 2.0712 -2.8120 0.0279 12 6 1.5605 -2.0897 -1.2211 13 1 0.4709 -2.1135 -1.2349 14 6 2.0941 -2.7758 -2.4522 15 1 2.7332 -3.6409 -2.3540 16 6 1.7656 -2.2999 -3.7037 17 7 2.2308 -2.8989 -4.7781 18 14 0.6596 -0.8041 -3.8735 19 1 1.4910 0.4262 -3.8965 20 1 -0.1149 -0.9018 -5.1367 21 1 -0.2766 -0.7474 -2.7221 22 7 2.0203 -0.6941 -1.1990 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5145 -0.8896 26 1 3.1303 -0.6986 1.2628 27 1 1.6548 -0.2260 2.1394 28 1 3.0519 -2.6667 2.6228 29 1 1.4194 -2.4434 3.2960 30 1 0.6517 -4.4813 2.1104 31 1 2.2842 -4.7046 1.4371 32 1 2.0947 -6.9364 2.6242 33 1 1.9772 -6.9258 4.4000 34 1 0.5752 -6.4482 3.4123 35 1 3.8814 -3.9145 3.7802 36 1 3.8507 -5.4900 4.6084 37 1 4.0783 -5.4161 2.8448 38 1 3.1612 -2.8120 0.0279 39 1 1.7072 -3.8394 0.0282 40 1 2.0000 -2.5639 -5.6586 41 1 1.7409 -0.2080 -2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = 3.221613 kcal Electronic energy + Delta-G solvation = -18674.277825 eV Core-core repulsion = 16009.603450 eV Total energy + Delta-G solvation = -2664.674375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59744 -38.50755 -35.92678 -34.84028 -32.71931 -30.35322 -28.58723 -28.47938 -27.31421 -26.18052 -23.65752 -23.07557 -21.45995 -19.79387 -18.91757 -17.96144 -16.77172 -16.52337 -16.06122 -15.94910 -15.81608 -15.60597 -14.96071 -14.80742 -14.65597 -14.47267 -14.01909 -13.38602 -13.30932 -13.03095 -12.93968 -12.69789 -12.59056 -12.56969 -12.34822 -12.24483 -11.86762 -11.82093 -11.62024 -11.32445 -11.11612 -10.81152 -9.40028 -9.28717 -9.05954 -8.35157 -6.40687 1.23267 1.29480 1.36848 2.24505 2.72606 2.92575 3.30672 3.59823 3.93561 3.97146 4.05611 4.26124 4.27663 4.38594 4.43987 4.47437 4.54368 4.56227 4.64222 4.68852 4.71314 4.75761 4.89445 4.92062 4.99251 5.00109 5.00370 5.05032 5.10698 5.19101 5.47313 5.50356 5.94394 6.01819 6.09425 6.14804 6.26963 6.42064 6.51414 6.73872 7.25077 8.81495 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.007049 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.899687 B = 3971.297975 C = 4622.941692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 H 0.095 0.905 4 C 0.073 3.927 5 N -0.540 5.540 6 C 0.069 3.931 7 C 0.056 3.944 8 N -0.551 5.551 9 C 0.024 3.976 10 C 0.020 3.980 11 C 0.088 3.912 12 C 0.191 3.809 13 H 0.004 0.996 14 C -0.515 4.515 15 H 0.035 0.965 16 C 0.020 3.980 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.259 1.259 20 H -0.292 1.292 21 H -0.246 1.246 22 N -0.693 5.693 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.103 0.897 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.068 0.932 40 H 0.267 0.733 41 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 1.799 17.424 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.043 4.043 3 H 0.113 0.887 4 C -0.055 4.055 5 N -0.266 5.266 6 C -0.059 4.059 7 C -0.072 4.072 8 N -0.275 5.275 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.040 4.040 12 C 0.083 3.917 13 H 0.022 0.978 14 C -0.554 4.554 15 H 0.053 0.947 16 C -0.179 4.179 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.184 1.184 20 H -0.219 1.219 21 H -0.170 1.170 22 N -0.329 5.329 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.502 1.866 17.916 18.186 hybrid contribution 0.235 -0.056 -1.891 1.907 sum -2.267 1.810 16.025 16.286 Atomic orbital electron populations 1.22357 0.97014 1.02120 1.01514 1.21894 0.93671 0.97942 0.90770 0.88745 1.22113 0.97380 0.88256 0.97791 1.62232 1.59737 1.02710 1.01879 1.22030 0.98597 0.92886 0.92394 1.22174 1.01056 0.93941 0.90071 1.61986 1.14028 1.15070 1.36448 1.22442 1.01346 0.87366 1.01290 1.22493 0.86736 1.02630 1.00955 1.21894 0.95866 0.97185 0.89047 1.19391 0.93470 0.85819 0.93023 0.97814 1.21243 1.30442 1.13019 0.90664 0.94668 1.25815 0.97039 0.99691 0.95333 1.70029 1.46886 1.42791 0.98632 0.86027 0.79638 0.80158 0.78002 1.18421 1.21886 1.17013 1.61331 1.63931 1.03946 1.03733 0.90054 0.92923 0.94537 0.95190 0.87842 0.95024 0.88829 0.90407 0.96077 0.96294 0.89575 0.90882 0.91170 0.89563 0.96608 0.96983 0.91397 0.92369 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.46 8.66 71.98 0.62 -4.84 16 2 C 0.07 2.27 3.70 44.92 0.17 2.43 16 3 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.07 2.20 5.01 86.31 0.43 2.63 16 5 N -0.54 -17.93 4.18 -895.73 -3.74 -21.67 16 6 C 0.07 1.88 5.20 86.30 0.45 2.33 16 7 C 0.06 1.54 4.22 86.30 0.36 1.91 16 8 N -0.55 -12.94 5.02 -948.84 -4.76 -17.70 16 9 C 0.02 0.47 9.57 127.69 1.22 1.69 16 10 C 0.02 0.42 9.32 127.69 1.19 1.61 16 11 C 0.09 3.68 4.15 86.31 0.36 4.04 16 12 C 0.19 9.15 1.68 44.17 0.07 9.23 16 13 H 0.00 0.22 5.40 -2.39 -0.01 0.21 16 14 C -0.51 -30.02 9.34 25.60 0.24 -29.78 16 15 H 0.03 2.27 7.99 -2.91 -0.02 2.24 16 16 C 0.02 1.16 5.47 84.65 0.46 1.62 16 17 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 18 Si 0.94 44.30 24.66 68.60 1.69 45.99 16 19 H -0.26 -11.56 6.97 99.48 0.69 -10.87 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.25 -10.90 5.74 99.48 0.57 -10.33 16 22 N -0.69 -30.44 6.28 -472.88 -2.97 -33.41 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.91 5.94 -2.39 -0.01 1.90 16 25 H 0.04 1.18 7.53 -2.38 -0.02 1.17 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.03 0.86 6.49 -2.39 -0.02 0.85 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 31 H 0.02 0.68 6.24 -2.39 -0.01 0.66 16 32 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 34 H 0.07 1.38 8.12 -2.38 -0.02 1.36 16 35 H 0.07 1.45 6.47 -2.39 -0.02 1.44 16 36 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 37 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 2.85 5.99 -2.39 -0.01 2.83 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.31 14.25 3.99 -89.69 -0.36 13.89 16 Total: -1.00 -65.62 302.13 -3.42 -69.04 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.48 Total: 23.88 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.58 Total: -7.13 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -11.17 Total: -131.78 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.69 Total: 45.99 kcal Total: -65.62 -3.42 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.262 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds