Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99921 * 2 1 4 4 C 1.46900 * 110.99974 * 123.94987 * 2 1 3 5 5 C 1.52991 * 109.47115 * 170.00377 * 4 2 1 6 6 N 1.46900 * 109.47208 * 180.02562 * 5 4 2 7 7 C 1.46958 * 111.00390 * 66.04236 * 6 5 4 8 8 C 1.53052 * 109.36692 * 183.18818 * 7 6 5 9 9 N 1.46956 * 109.36498 * 301.60327 * 8 7 6 10 10 C 1.46896 * 110.99565 * 183.18993 * 9 8 7 11 11 C 1.46952 * 110.88331 * 59.31922 * 9 8 7 12 12 H 1.09001 * 109.49275 * 60.66692 * 11 9 8 13 13 C 1.50696 * 109.48748 * 180.71462 * 11 9 8 14 14 H 1.07994 * 120.00525 * 35.10240 * 13 11 9 15 15 C 1.37884 * 119.99744 * 215.10225 * 13 11 9 16 16 N 1.31519 * 119.99848 * 5.20099 * 15 13 11 17 17 Si 1.86803 * 120.00041 * 185.19782 * 15 13 11 18 18 H 1.48498 * 109.46804 * 90.00052 * 17 15 13 19 19 H 1.48498 * 109.47139 * 210.00305 * 17 15 13 20 20 H 1.48504 * 109.46877 * 330.00241 * 17 15 13 21 21 C 1.46957 * 111.00302 * 189.84261 * 6 5 4 22 22 H 1.09004 * 109.46931 * 56.04865 * 1 2 3 23 23 H 1.08994 * 109.46890 * 176.04632 * 1 2 3 24 24 H 1.09002 * 109.47117 * 296.04732 * 1 2 3 25 25 H 1.09007 * 109.47428 * 59.99482 * 3 2 1 26 26 H 1.09003 * 109.47365 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46917 * 300.00004 * 3 2 1 28 28 H 1.09005 * 109.46930 * 290.00410 * 4 2 1 29 29 H 1.09007 * 109.46971 * 50.00204 * 4 2 1 30 30 H 1.09005 * 109.47248 * 299.99837 * 5 4 2 31 31 H 1.08994 * 109.47679 * 60.00193 * 5 4 2 32 32 H 1.09001 * 109.48860 * 303.15988 * 7 6 5 33 33 H 1.09005 * 109.48657 * 63.19911 * 7 6 5 34 34 H 1.09001 * 109.48389 * 61.56790 * 8 7 6 35 35 H 1.08998 * 109.48681 * 181.61011 * 8 7 6 36 36 H 1.08996 * 109.47656 * 54.18976 * 10 9 8 37 37 H 1.09004 * 109.46876 * 174.19300 * 10 9 8 38 38 H 1.09002 * 109.47163 * 294.18810 * 10 9 8 39 39 H 0.97004 * 119.99416 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.49161 * 296.78253 * 21 6 5 41 41 H 1.09009 * 109.48573 * 56.84206 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 7 4.0308 -1.7216 2.1078 7 6 3.5041 -3.0936 2.1073 8 6 4.0117 -3.8325 3.3478 9 7 5.4813 -3.8355 3.3459 10 6 6.0075 -4.6020 4.4832 11 6 6.0079 -2.4636 3.3464 12 1 5.6695 -1.9445 4.2431 13 6 7.5142 -2.5034 3.3267 14 1 8.0269 -3.2796 2.7780 15 6 8.2381 -1.5486 4.0091 16 7 7.6173 -0.6652 4.7601 17 14 10.1003 -1.5101 3.8673 18 1 10.4921 -0.6377 2.7312 19 1 10.6816 -0.9760 5.1250 20 1 10.6074 -2.8860 3.6326 21 6 5.5003 -1.7248 2.1059 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 -0.3633 0.4513 0.9233 25 1 1.6459 1.8949 0.8900 26 1 3.0851 1.3424 0.0005 27 1 1.6460 1.8947 -0.8900 28 1 1.7975 -0.2246 2.0628 29 1 1.5090 -1.7406 1.1757 30 1 3.7024 -1.4965 0.0453 31 1 3.9909 0.0194 0.9324 32 1 2.4146 -3.0649 2.1216 33 1 3.8425 -3.6127 1.2105 34 1 3.6503 -3.3288 4.2443 35 1 3.6456 -4.8591 3.3348 36 1 5.5744 -5.6021 4.4790 37 1 7.0920 -4.6753 4.4012 38 1 5.7469 -4.0970 5.4134 39 1 8.1266 0.0063 5.2405 40 1 5.8618 -2.2283 1.2093 41 1 5.8662 -0.6980 2.1191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = 21.311549 kcal Electronic energy + Delta-G solvation = -18337.673721 eV Core-core repulsion = 15673.783785 eV Total energy + Delta-G solvation = -2663.889936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.64719 -37.26106 -34.60049 -32.73005 -29.84851 -29.66890 -27.59257 -26.74703 -24.95070 -23.65819 -22.29309 -21.74212 -20.23000 -18.70134 -16.48393 -15.80174 -15.43631 -14.98401 -14.73253 -14.50254 -14.04131 -13.81313 -13.43614 -13.32165 -13.01162 -12.59745 -12.34498 -11.97425 -11.82688 -11.73958 -11.38259 -11.27589 -10.99968 -10.91139 -10.75598 -10.58254 -10.38436 -10.24231 -9.79613 -9.60600 -8.98755 -8.52811 -8.35374 -7.60496 -7.06988 -6.04719 -4.10039 3.29235 3.36295 3.39933 3.89775 4.39004 4.73863 5.04995 5.09563 5.15534 5.31682 5.37190 5.42239 5.55049 5.64450 5.74636 5.77307 5.80816 5.92233 5.95022 6.02091 6.14500 6.24968 6.30707 6.35197 6.48965 6.62202 6.72372 6.75316 6.94999 7.02064 7.04983 7.25831 7.60349 7.73722 7.83187 7.90465 8.10532 8.29453 8.66630 9.07279 9.56066 11.02280 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.006116 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.257564 B = 4576.696929 C = 5354.371988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.058 3.942 5 C 0.060 3.940 6 N -0.544 5.544 7 C 0.063 3.937 8 C 0.056 3.944 9 N -0.547 5.547 10 C 0.049 3.951 11 C 0.206 3.794 12 H 0.042 0.958 13 C -0.506 4.506 14 H 0.061 0.939 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.079 3.921 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.012 0.988 39 H 0.262 0.738 40 H 0.022 0.978 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 0.069 -6.043 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.068 4.068 6 N -0.270 5.270 7 C -0.066 4.066 8 C -0.073 4.073 9 N -0.272 5.272 10 C -0.100 4.100 11 C 0.100 3.900 12 H 0.060 0.940 13 C -0.546 4.546 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.049 4.049 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.834 0.007 -6.346 12.555 hybrid contribution 0.684 0.598 0.705 1.150 sum -10.149 0.605 -5.641 11.628 Atomic orbital electron populations 1.22348 0.87596 1.02028 1.00217 1.61950 1.07570 1.14056 1.43859 1.22443 1.01366 0.88685 1.00236 1.22143 0.95914 0.97882 0.91022 1.21984 0.93642 0.98718 0.92481 1.62257 1.10705 1.12744 1.41248 1.22073 0.97947 0.88962 0.97579 1.22045 0.90827 0.97950 0.96466 1.62341 1.04205 1.18259 1.42412 1.22007 1.01547 0.95078 0.91334 1.19452 0.94031 0.82767 0.93729 0.94048 1.21001 0.90211 1.12255 1.31095 0.92090 1.25023 0.98646 0.95713 0.94395 1.69964 1.35634 1.17786 1.29284 0.86565 0.85426 0.78411 0.77430 1.20562 1.21310 1.19754 1.22434 0.82445 1.00601 0.99375 0.91622 0.91524 0.95774 0.95610 0.90831 0.91738 0.94016 0.90967 0.94724 0.91192 0.91856 0.94898 0.95362 0.92225 0.94396 0.90710 0.96907 0.92830 0.95933 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.07 0.57 0.85 16 2 N -0.55 -7.11 5.02 -251.25 -1.26 -8.37 16 3 C 0.02 0.25 9.40 60.06 0.56 0.81 16 4 C 0.06 0.84 4.89 -3.83 -0.02 0.82 16 5 C 0.06 1.02 4.89 -3.83 -0.02 1.00 16 6 N -0.54 -10.81 4.71 -234.46 -1.10 -11.91 16 7 C 0.06 1.13 5.41 -3.77 -0.02 1.11 16 8 C 0.06 1.08 5.62 -3.77 -0.02 1.06 16 9 N -0.55 -12.34 4.77 -236.13 -1.13 -13.47 16 10 C 0.05 1.03 9.23 60.06 0.55 1.59 16 11 C 0.21 5.26 2.11 -68.81 -0.15 5.11 16 12 H 0.04 1.21 7.24 -51.93 -0.38 0.84 16 13 C -0.51 -13.80 6.98 -34.44 -0.24 -14.04 16 14 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 15 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 16 N -0.89 -25.58 12.77 55.43 0.71 -24.87 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.08 1.84 4.87 -3.77 -0.02 1.82 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.07 1.00 6.41 -51.93 -0.33 0.67 16 30 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.07 1.20 6.36 -51.93 -0.33 0.87 16 32 H 0.06 0.98 6.33 -51.93 -0.33 0.65 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.07 1.67 7.08 -51.93 -0.37 1.30 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.70 8.07 -51.92 -0.42 1.29 16 LS Contribution 316.19 15.07 4.76 4.76 Total: -1.00 -28.79 316.19 -9.44 -38.23 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.52 Total: -2.31 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 1.11 Total: 1.83 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -2.79 Total: -58.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.79 -9.44 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.545 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds