Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99921 * 2 1 4 4 C 1.46900 * 110.99974 * 123.94987 * 2 1 3 5 5 C 1.52991 * 109.47115 * 170.00377 * 4 2 1 6 6 N 1.46900 * 109.47208 * 180.02562 * 5 4 2 7 7 C 1.46958 * 111.00390 * 66.04236 * 6 5 4 8 8 C 1.53052 * 109.36692 * 183.18818 * 7 6 5 9 9 N 1.46956 * 109.36498 * 301.60327 * 8 7 6 10 10 C 1.46896 * 110.99565 * 183.18993 * 9 8 7 11 11 C 1.46952 * 110.88331 * 59.31922 * 9 8 7 12 12 H 1.09001 * 109.49275 * 60.66692 * 11 9 8 13 13 C 1.50696 * 109.48748 * 180.71462 * 11 9 8 14 14 H 1.07994 * 120.00525 * 35.10240 * 13 11 9 15 15 C 1.37884 * 119.99744 * 215.10225 * 13 11 9 16 16 N 1.31519 * 119.99848 * 5.20099 * 15 13 11 17 17 Si 1.86803 * 120.00041 * 185.19782 * 15 13 11 18 18 H 1.48498 * 109.46804 * 90.00052 * 17 15 13 19 19 H 1.48498 * 109.47139 * 210.00305 * 17 15 13 20 20 H 1.48504 * 109.46877 * 330.00241 * 17 15 13 21 21 C 1.46957 * 111.00302 * 189.84261 * 6 5 4 22 22 H 1.09004 * 109.46931 * 56.04865 * 1 2 3 23 23 H 1.08994 * 109.46890 * 176.04632 * 1 2 3 24 24 H 1.09002 * 109.47117 * 296.04732 * 1 2 3 25 25 H 1.09007 * 109.47428 * 59.99482 * 3 2 1 26 26 H 1.09003 * 109.47365 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46917 * 300.00004 * 3 2 1 28 28 H 1.09005 * 109.46930 * 290.00410 * 4 2 1 29 29 H 1.09007 * 109.46971 * 50.00204 * 4 2 1 30 30 H 1.09005 * 109.47248 * 299.99837 * 5 4 2 31 31 H 1.08994 * 109.47679 * 60.00193 * 5 4 2 32 32 H 1.09001 * 109.48860 * 303.15988 * 7 6 5 33 33 H 1.09005 * 109.48657 * 63.19911 * 7 6 5 34 34 H 1.09001 * 109.48389 * 61.56790 * 8 7 6 35 35 H 1.08998 * 109.48681 * 181.61011 * 8 7 6 36 36 H 1.08996 * 109.47656 * 54.18976 * 10 9 8 37 37 H 1.09004 * 109.46876 * 174.19300 * 10 9 8 38 38 H 1.09002 * 109.47163 * 294.18810 * 10 9 8 39 39 H 0.97004 * 119.99416 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.49161 * 296.78253 * 21 6 5 41 41 H 1.09009 * 109.48573 * 56.84206 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 7 4.0308 -1.7216 2.1078 7 6 3.5041 -3.0936 2.1073 8 6 4.0117 -3.8325 3.3478 9 7 5.4813 -3.8355 3.3459 10 6 6.0075 -4.6020 4.4832 11 6 6.0079 -2.4636 3.3464 12 1 5.6695 -1.9445 4.2431 13 6 7.5142 -2.5034 3.3267 14 1 8.0269 -3.2796 2.7780 15 6 8.2381 -1.5486 4.0091 16 7 7.6173 -0.6652 4.7601 17 14 10.1003 -1.5101 3.8673 18 1 10.4921 -0.6377 2.7312 19 1 10.6816 -0.9760 5.1250 20 1 10.6074 -2.8860 3.6326 21 6 5.5003 -1.7248 2.1059 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 -0.3633 0.4513 0.9233 25 1 1.6459 1.8949 0.8900 26 1 3.0851 1.3424 0.0005 27 1 1.6460 1.8947 -0.8900 28 1 1.7975 -0.2246 2.0628 29 1 1.5090 -1.7406 1.1757 30 1 3.7024 -1.4965 0.0453 31 1 3.9909 0.0194 0.9324 32 1 2.4146 -3.0649 2.1216 33 1 3.8425 -3.6127 1.2105 34 1 3.6503 -3.3288 4.2443 35 1 3.6456 -4.8591 3.3348 36 1 5.5744 -5.6021 4.4790 37 1 7.0920 -4.6753 4.4012 38 1 5.7469 -4.0970 5.4134 39 1 8.1266 0.0063 5.2405 40 1 5.8618 -2.2283 1.2093 41 1 5.8662 -0.6980 2.1191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = -0.812159 kcal Electronic energy + Delta-G solvation = -18338.633077 eV Core-core repulsion = 15673.783785 eV Total energy + Delta-G solvation = -2664.849292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23537 -38.46755 -36.18265 -34.75362 -31.68500 -31.03725 -28.49350 -28.35231 -26.86385 -25.00845 -24.02677 -23.20330 -21.55153 -20.46875 -18.52400 -17.25856 -16.63515 -16.62212 -16.15106 -15.80638 -15.59515 -15.42073 -15.17629 -14.82078 -14.52061 -14.13326 -13.70606 -13.31681 -13.08711 -13.03234 -12.84744 -12.69250 -12.59269 -12.57303 -12.44186 -12.23342 -12.01417 -11.72679 -11.68041 -11.42006 -10.91442 -10.61903 -9.35820 -9.20691 -8.92618 -8.15159 -6.27845 1.41246 1.42056 1.53000 2.40260 2.73833 3.11345 3.38972 3.48959 3.87960 4.13829 4.22450 4.30372 4.36776 4.46674 4.49039 4.58784 4.61103 4.66967 4.70606 4.73163 4.76309 4.84476 4.90510 4.92692 5.00376 5.02404 5.06030 5.08319 5.20019 5.37987 5.58458 5.69521 5.95259 6.01357 6.09315 6.22435 6.28665 6.43210 6.77325 6.95495 7.42438 8.91737 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.006116 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.257564 B = 4576.696929 C = 5354.371988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.020 3.980 4 C 0.071 3.929 5 C 0.066 3.934 6 N -0.555 5.555 7 C 0.065 3.935 8 C 0.054 3.946 9 N -0.554 5.554 10 C 0.053 3.947 11 C 0.213 3.787 12 H -0.004 1.004 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.924 5.924 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.095 3.905 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.015 0.985 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.055 0.945 38 H -0.004 1.004 39 H 0.263 0.737 40 H 0.015 0.985 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 -0.783 -7.137 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.128 4.128 4 C -0.058 4.058 5 C -0.063 4.063 6 N -0.281 5.281 7 C -0.062 4.062 8 C -0.074 4.074 9 N -0.280 5.280 10 C -0.095 4.095 11 C 0.105 3.895 12 H 0.014 0.986 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.182 4.182 16 N -0.563 5.563 17 Si 0.784 3.216 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.034 4.034 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.996 -0.859 -7.454 14.149 hybrid contribution 0.952 0.835 1.029 1.632 sum -11.043 -0.024 -6.425 12.777 Atomic orbital electron populations 1.22429 0.85715 1.02997 1.01057 1.61958 1.09284 1.14396 1.42812 1.22468 1.00630 0.88483 1.01198 1.21952 0.93901 0.98646 0.91256 1.21970 0.95397 0.97672 0.91218 1.62178 1.08400 1.14481 1.43003 1.22159 0.99727 0.87500 0.96857 1.22206 0.88562 1.00101 0.96561 1.62311 1.06490 1.16290 1.42861 1.21992 1.00699 0.96666 0.90161 1.19206 0.93445 0.84219 0.92586 0.98591 1.21216 0.91487 1.12063 1.30902 0.92788 1.25783 1.03169 0.95267 0.93993 1.70098 1.37348 1.18574 1.30292 0.85549 0.79911 0.78659 0.77507 1.19929 1.20936 1.19014 1.22007 0.85020 0.98433 0.97906 0.89998 0.90668 0.95570 0.95655 0.92139 0.89753 0.95105 0.89884 0.94743 0.92162 0.88502 0.94820 0.96638 0.88776 0.90481 0.92566 0.98538 0.92822 0.96636 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.57 127.69 1.22 1.69 16 2 N -0.56 -13.34 5.02 -948.82 -4.76 -18.10 16 3 C 0.02 0.45 9.40 127.69 1.20 1.65 16 4 C 0.07 1.92 4.89 86.30 0.42 2.34 16 5 C 0.07 2.17 4.89 86.30 0.42 2.60 16 6 N -0.56 -21.96 4.71 -895.71 -4.22 -26.18 16 7 C 0.07 2.23 5.41 86.31 0.47 2.70 16 8 C 0.05 2.00 5.62 86.31 0.48 2.48 16 9 N -0.55 -24.86 4.77 -900.99 -4.30 -29.16 16 10 C 0.05 2.23 9.23 127.69 1.18 3.41 16 11 C 0.21 11.14 2.11 44.18 0.09 11.23 16 12 H 0.00 -0.23 7.24 -2.39 -0.02 -0.25 16 13 C -0.52 -28.91 6.98 25.60 0.18 -28.73 16 14 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 15 C 0.02 0.98 5.45 84.66 0.46 1.44 16 16 N -0.92 -54.88 12.77 21.45 0.27 -54.60 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 C 0.09 4.54 4.87 86.31 0.42 4.96 16 22 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 24 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.06 1.49 6.30 -2.39 -0.02 1.47 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.03 0.91 8.12 -2.38 -0.02 0.89 16 29 H 0.08 2.07 6.41 -2.38 -0.02 2.05 16 30 H 0.03 1.15 8.12 -2.38 -0.02 1.13 16 31 H 0.06 2.10 6.36 -2.39 -0.02 2.08 16 32 H 0.10 2.68 6.33 -2.39 -0.02 2.67 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 2.84 8.11 -2.39 -0.02 2.82 16 36 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 37 H 0.06 2.53 7.08 -2.38 -0.02 2.51 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.04 2.17 8.07 -2.38 -0.02 2.15 16 Total: -1.00 -63.22 316.19 -3.47 -66.69 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.96 Total: 9.64 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.55 Total: 5.77 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -13.01 Total: -128.04 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.22 -3.47 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.879 kcal (2) G-P(sol) polarization free energy of solvation -63.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds