Wall clock time and date at job start Mon Mar 30 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.48317 * 2 1 4 4 C 1.53053 * 109.50361 * 239.95130 * 2 1 3 5 5 N 1.46958 * 109.36340 * 181.61889 * 4 2 1 6 6 C 1.46961 * 110.87940 * 59.31691 * 5 4 2 7 7 C 1.53050 * 109.36501 * 300.68045 * 6 5 4 8 8 H 1.09003 * 109.50841 * 298.42529 * 7 6 5 9 9 C 1.50697 * 109.48963 * 178.36780 * 7 6 5 10 10 H 1.07999 * 120.00610 * 245.78692 * 9 7 6 11 11 C 1.37880 * 119.99948 * 65.78582 * 9 7 6 12 12 N 1.31518 * 119.99972 * 5.22262 * 11 9 7 13 13 Si 1.86803 * 120.00184 * 185.23078 * 11 9 7 14 14 H 1.48494 * 109.47152 * 84.99395 * 13 11 9 15 15 H 1.48504 * 109.46870 * 324.99709 * 13 11 9 16 16 H 1.48502 * 109.47214 * 204.99700 * 13 11 9 17 17 N 1.46951 * 109.49020 * 120.04578 * 2 1 3 18 18 C 1.46900 * 111.00104 * 303.17744 * 17 2 1 19 19 C 1.53007 * 109.46889 * 292.09196 * 18 17 2 20 20 N 1.46899 * 109.46833 * 184.78026 * 19 18 17 21 21 C 1.46897 * 110.99986 * 170.00348 * 20 19 18 22 22 C 1.46908 * 110.99967 * 293.95276 * 20 19 18 23 23 H 1.08999 * 109.46671 * 305.40879 * 1 2 3 24 24 H 1.08994 * 109.47401 * 65.40812 * 1 2 3 25 25 H 1.08993 * 109.46920 * 185.41030 * 1 2 3 26 26 H 1.09007 * 109.48512 * 301.58637 * 4 2 1 27 27 H 1.08999 * 109.49105 * 61.64573 * 4 2 1 28 28 H 1.00894 * 111.00257 * 295.45393 * 5 4 2 29 29 H 1.08997 * 109.48886 * 180.71502 * 6 5 4 30 30 H 1.09005 * 109.48750 * 60.64629 * 6 5 4 31 31 H 0.97002 * 119.99806 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.47394 * 52.09353 * 18 17 2 33 33 H 1.08996 * 109.47191 * 172.09727 * 18 17 2 34 34 H 1.08999 * 109.47041 * 304.78026 * 19 18 17 35 35 H 1.09000 * 109.46979 * 64.78249 * 19 18 17 36 36 H 1.08998 * 109.47132 * 59.99915 * 21 20 19 37 37 H 1.09002 * 109.47115 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46794 * 299.99656 * 21 20 19 39 39 H 1.09004 * 109.47024 * 60.00334 * 22 20 19 40 40 H 1.08997 * 109.46988 * 180.02562 * 22 20 19 41 41 H 1.08993 * 109.46948 * 300.00209 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0411 -0.7224 -1.2488 5 7 3.5101 -0.7546 -1.2262 6 6 4.0004 -1.4483 -0.0270 7 6 3.4894 -0.7258 1.2217 8 1 3.8753 0.2935 1.2360 9 6 3.9574 -1.4579 2.4530 10 1 3.2395 -1.9383 3.1012 11 6 5.3022 -1.5144 2.7521 12 7 6.1669 -0.8446 2.0218 13 14 5.8959 -2.5425 4.1943 14 1 6.0794 -3.9496 3.7568 15 1 4.8907 -2.4906 5.2862 16 1 7.1896 -2.0044 4.6865 17 7 2.0204 -0.6936 1.1992 18 6 1.4885 -0.0739 2.4202 19 6 2.0893 1.3235 2.5862 20 7 1.6473 1.8979 3.8639 21 6 2.3848 3.1309 4.1700 22 6 0.1981 2.1387 3.8596 23 1 -0.3632 0.5954 0.8376 24 1 -0.3634 0.4276 -0.9344 25 1 -0.3633 -1.0230 0.0969 26 1 1.6551 -1.7418 -1.2627 27 1 1.7025 -0.1929 -2.1394 28 1 3.8932 0.1768 -1.2872 29 1 5.0904 -1.4479 -0.0268 30 1 3.6368 -2.4758 -0.0270 31 1 7.1130 -0.8840 2.2325 32 1 0.4038 0.0034 2.3457 33 1 1.7507 -0.6867 3.2826 34 1 3.1771 1.2550 2.5755 35 1 1.7573 1.9613 1.7669 36 1 2.2136 3.8623 3.3802 37 1 2.0377 3.5354 5.1208 38 1 3.4502 2.9100 4.2360 39 1 -0.3263 1.1965 3.7000 40 1 -0.1023 2.5644 4.8170 41 1 -0.0522 2.8342 3.0586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:20 Heat of formation + Delta-G solvation = 18.473561 kcal Electronic energy + Delta-G solvation = -19141.209804 eV Core-core repulsion = 16477.196803 eV Total energy + Delta-G solvation = -2664.013001 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.07159 -36.82076 -33.62024 -33.33452 -31.07400 -28.43699 -27.32353 -26.51280 -25.31920 -24.15355 -21.95586 -21.03010 -20.79541 -18.55261 -16.20763 -15.65289 -15.33167 -15.04036 -14.80838 -14.33015 -14.15314 -14.03147 -13.40979 -12.83219 -12.46970 -12.22054 -12.14725 -11.80395 -11.69612 -11.60765 -11.43879 -11.22015 -10.99035 -10.89455 -10.76804 -10.54362 -10.38569 -10.19587 -9.95491 -9.55689 -9.20309 -8.48718 -8.03745 -7.51878 -7.11308 -6.05333 -4.05649 3.33262 3.39186 3.43336 4.29766 4.42529 4.89761 5.18909 5.29386 5.37407 5.40680 5.48363 5.60069 5.60821 5.69638 5.78666 5.86367 5.92965 5.99535 6.00974 6.11600 6.15025 6.24322 6.29603 6.38543 6.58064 6.66780 6.72565 6.85149 7.03511 7.19795 7.38932 7.43349 7.60589 7.73451 7.87305 8.07349 8.13778 8.31272 8.57832 9.00554 9.58396 11.03512 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.011373 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.208720 B = 2461.329925 C = 3717.368372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.039 3.961 3 H 0.025 0.975 4 C 0.069 3.931 5 N -0.698 5.698 6 C 0.068 3.932 7 C 0.185 3.815 8 H 0.008 0.992 9 C -0.498 4.498 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.274 1.274 16 H -0.289 1.289 17 N -0.522 5.522 18 C 0.072 3.928 19 C 0.025 3.975 20 N -0.539 5.539 21 C 0.027 3.973 22 C 0.024 3.976 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.327 0.673 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.015 0.985 36 H 0.017 0.983 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 5.399 -0.950 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 H 0.043 0.957 4 C -0.061 4.061 5 N -0.325 5.325 6 C -0.061 4.061 7 C 0.077 3.923 8 H 0.026 0.974 9 C -0.537 4.537 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.199 1.199 16 H -0.215 1.215 17 N -0.247 5.247 18 C -0.056 4.056 19 C -0.104 4.104 20 N -0.263 5.263 21 C -0.121 4.121 22 C -0.124 4.124 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.835 4.011 -1.051 9.760 hybrid contribution 0.356 1.737 0.922 1.998 sum -8.480 5.747 -0.129 10.244 Atomic orbital electron populations 1.21809 0.95537 1.02038 1.00379 1.22367 0.95022 0.95679 0.94160 0.95682 1.22033 0.89222 1.00449 0.94446 1.60952 1.06189 1.22473 1.42856 1.22262 1.01208 0.96953 0.85683 1.19945 0.80843 0.95723 0.95781 0.97445 1.20990 0.91810 1.33379 1.07569 0.91833 1.24909 0.96813 0.95501 0.96672 1.69921 1.02341 1.41137 1.39954 0.86558 0.77961 0.80530 0.82685 1.20616 1.19877 1.21506 1.62535 1.12490 1.50202 0.99472 1.22031 0.96798 0.92122 0.94683 1.22905 1.02986 0.97009 0.87533 1.61957 1.03919 1.26862 1.33573 1.22346 0.99710 0.90558 0.99511 1.22404 0.89300 1.00702 1.00015 0.93318 0.93197 0.91937 0.90933 0.92176 0.85691 0.89014 0.92437 0.92925 0.92886 0.89335 0.88811 0.96659 0.96470 0.91976 0.91149 0.91227 0.92045 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.70 37.16 0.32 -1.73 16 2 C 0.04 0.69 2.25 -67.65 -0.15 0.54 16 3 H 0.03 0.48 6.79 -51.93 -0.35 0.13 16 4 C 0.07 1.22 6.00 -3.77 -0.02 1.19 16 5 N -0.70 -13.96 6.91 -113.63 -0.79 -14.74 16 6 C 0.07 1.59 5.82 -3.77 -0.02 1.57 16 7 C 0.18 4.42 1.23 -68.81 -0.08 4.34 16 8 H 0.01 0.21 6.30 -51.93 -0.33 -0.11 16 9 C -0.50 -13.18 7.69 -34.44 -0.26 -13.44 16 10 H 0.06 1.72 6.70 -52.49 -0.35 1.37 16 11 C 0.06 1.68 5.28 -17.82 -0.09 1.59 16 12 N -0.89 -24.78 11.99 55.43 0.66 -24.12 16 13 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 N -0.52 -10.87 4.54 -219.94 -1.00 -11.87 16 18 C 0.07 1.41 4.49 -3.82 -0.02 1.40 16 19 C 0.02 0.47 4.27 -3.82 -0.02 0.46 16 20 N -0.54 -9.21 5.02 -251.25 -1.26 -10.47 16 21 C 0.03 0.41 9.57 60.06 0.57 0.99 16 22 C 0.02 0.34 9.32 60.07 0.56 0.90 16 23 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.33 6.39 8.89 -39.29 -0.35 6.04 16 29 H 0.09 2.38 6.80 -51.93 -0.35 2.03 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.93 4.59 -51.93 -0.24 0.69 16 33 H 0.09 1.95 6.54 -51.93 -0.34 1.61 16 34 H 0.09 2.15 6.00 -51.93 -0.31 1.84 16 35 H 0.02 0.29 6.89 -51.93 -0.36 -0.07 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 39 H 0.07 0.95 6.58 -51.93 -0.34 0.61 16 40 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -27.07 306.17 -9.02 -36.10 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.02 Total: 6.48 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -2.38 Total: -61.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.07 -9.02 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.569 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds