Wall clock time and date at job start Mon Mar 30 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.48317 * 2 1 4 4 C 1.53053 * 109.50361 * 239.95130 * 2 1 3 5 5 N 1.46958 * 109.36340 * 181.61889 * 4 2 1 6 6 C 1.46961 * 110.87940 * 59.31691 * 5 4 2 7 7 C 1.53050 * 109.36501 * 300.68045 * 6 5 4 8 8 H 1.09003 * 109.50841 * 298.42529 * 7 6 5 9 9 C 1.50697 * 109.48963 * 178.36780 * 7 6 5 10 10 H 1.07999 * 120.00610 * 245.78692 * 9 7 6 11 11 C 1.37880 * 119.99948 * 65.78582 * 9 7 6 12 12 N 1.31518 * 119.99972 * 5.22262 * 11 9 7 13 13 Si 1.86803 * 120.00184 * 185.23078 * 11 9 7 14 14 H 1.48494 * 109.47152 * 84.99395 * 13 11 9 15 15 H 1.48504 * 109.46870 * 324.99709 * 13 11 9 16 16 H 1.48502 * 109.47214 * 204.99700 * 13 11 9 17 17 N 1.46951 * 109.49020 * 120.04578 * 2 1 3 18 18 C 1.46900 * 111.00104 * 303.17744 * 17 2 1 19 19 C 1.53007 * 109.46889 * 292.09196 * 18 17 2 20 20 N 1.46899 * 109.46833 * 184.78026 * 19 18 17 21 21 C 1.46897 * 110.99986 * 170.00348 * 20 19 18 22 22 C 1.46908 * 110.99967 * 293.95276 * 20 19 18 23 23 H 1.08999 * 109.46671 * 305.40879 * 1 2 3 24 24 H 1.08994 * 109.47401 * 65.40812 * 1 2 3 25 25 H 1.08993 * 109.46920 * 185.41030 * 1 2 3 26 26 H 1.09007 * 109.48512 * 301.58637 * 4 2 1 27 27 H 1.08999 * 109.49105 * 61.64573 * 4 2 1 28 28 H 1.00894 * 111.00257 * 295.45393 * 5 4 2 29 29 H 1.08997 * 109.48886 * 180.71502 * 6 5 4 30 30 H 1.09005 * 109.48750 * 60.64629 * 6 5 4 31 31 H 0.97002 * 119.99806 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.47394 * 52.09353 * 18 17 2 33 33 H 1.08996 * 109.47191 * 172.09727 * 18 17 2 34 34 H 1.08999 * 109.47041 * 304.78026 * 19 18 17 35 35 H 1.09000 * 109.46979 * 64.78249 * 19 18 17 36 36 H 1.08998 * 109.47132 * 59.99915 * 21 20 19 37 37 H 1.09002 * 109.47115 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46794 * 299.99656 * 21 20 19 39 39 H 1.09004 * 109.47024 * 60.00334 * 22 20 19 40 40 H 1.08997 * 109.46988 * 180.02562 * 22 20 19 41 41 H 1.08993 * 109.46948 * 300.00209 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0411 -0.7224 -1.2488 5 7 3.5101 -0.7546 -1.2262 6 6 4.0004 -1.4483 -0.0270 7 6 3.4894 -0.7258 1.2217 8 1 3.8753 0.2935 1.2360 9 6 3.9574 -1.4579 2.4530 10 1 3.2395 -1.9383 3.1012 11 6 5.3022 -1.5144 2.7521 12 7 6.1669 -0.8446 2.0218 13 14 5.8959 -2.5425 4.1943 14 1 6.0794 -3.9496 3.7568 15 1 4.8907 -2.4906 5.2862 16 1 7.1896 -2.0044 4.6865 17 7 2.0204 -0.6936 1.1992 18 6 1.4885 -0.0739 2.4202 19 6 2.0893 1.3235 2.5862 20 7 1.6473 1.8979 3.8639 21 6 2.3848 3.1309 4.1700 22 6 0.1981 2.1387 3.8596 23 1 -0.3632 0.5954 0.8376 24 1 -0.3634 0.4276 -0.9344 25 1 -0.3633 -1.0230 0.0969 26 1 1.6551 -1.7418 -1.2627 27 1 1.7025 -0.1929 -2.1394 28 1 3.8932 0.1768 -1.2872 29 1 5.0904 -1.4479 -0.0268 30 1 3.6368 -2.4758 -0.0270 31 1 7.1130 -0.8840 2.2325 32 1 0.4038 0.0034 2.3457 33 1 1.7507 -0.6867 3.2826 34 1 3.1771 1.2550 2.5755 35 1 1.7573 1.9613 1.7669 36 1 2.2136 3.8623 3.3802 37 1 2.0377 3.5354 5.1208 38 1 3.4502 2.9100 4.2360 39 1 -0.3263 1.1965 3.7000 40 1 -0.1023 2.5644 4.8170 41 1 -0.0522 2.8342 3.0586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:20 Heat of formation + Delta-G solvation = -3.116102 kcal Electronic energy + Delta-G solvation = -19142.146002 eV Core-core repulsion = 16477.196803 eV Total energy + Delta-G solvation = -2664.949199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68471 -38.21112 -35.24028 -35.20332 -32.78224 -30.03660 -28.51328 -28.08701 -27.06762 -25.76070 -23.49696 -22.61279 -22.43239 -20.14617 -18.24507 -17.20288 -16.96360 -16.57565 -16.36110 -15.87469 -15.69541 -15.45528 -14.98968 -14.62579 -13.97967 -13.62270 -13.59102 -13.34622 -13.06325 -12.99942 -12.82418 -12.68252 -12.56873 -12.53712 -12.42811 -12.16744 -12.10798 -11.93329 -11.79507 -11.36863 -10.99544 -10.53985 -9.38800 -9.18767 -8.80527 -8.12841 -6.18516 1.41604 1.42781 1.51678 2.43163 2.96907 3.18261 3.34686 3.62170 3.94189 4.12671 4.20333 4.25723 4.30072 4.40558 4.44477 4.55794 4.59546 4.64018 4.68631 4.77933 4.80333 4.91412 4.95424 4.99541 5.05508 5.13039 5.14211 5.24428 5.33698 5.41280 5.66944 5.73949 5.97403 6.03981 6.14999 6.29038 6.41893 6.56534 6.76536 6.94753 7.48397 8.94850 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.011373 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.208720 B = 2461.329925 C = 3717.368372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.038 3.962 3 H 0.016 0.984 4 C 0.069 3.931 5 N -0.695 5.695 6 C 0.082 3.918 7 C 0.198 3.802 8 H -0.024 1.024 9 C -0.508 4.508 10 H 0.052 0.948 11 C 0.020 3.980 12 N -0.919 5.919 13 Si 0.950 3.050 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.286 1.286 17 N -0.531 5.531 18 C 0.080 3.920 19 C 0.044 3.956 20 N -0.560 5.560 21 C 0.029 3.971 22 C 0.025 3.975 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.330 0.670 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.260 0.740 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.019 0.981 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 5.948 -1.085 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 H 0.034 0.966 4 C -0.061 4.061 5 N -0.322 5.322 6 C -0.048 4.048 7 C 0.089 3.911 8 H -0.007 1.007 9 C -0.547 4.547 10 H 0.070 0.930 11 C -0.180 4.180 12 N -0.558 5.558 13 Si 0.776 3.224 14 H -0.201 1.201 15 H -0.198 1.198 16 H -0.212 1.212 17 N -0.256 5.256 18 C -0.049 4.049 19 C -0.085 4.085 20 N -0.284 5.284 21 C -0.119 4.119 22 C -0.122 4.122 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.977 4.567 -1.189 11.948 hybrid contribution 0.958 1.610 0.954 2.103 sum -10.019 6.177 -0.234 11.772 Atomic orbital electron populations 1.21744 0.92404 1.02487 1.02209 1.22472 0.97423 0.94677 0.92688 0.96611 1.22171 0.87243 1.00864 0.95794 1.60881 1.08167 1.22480 1.40670 1.21880 0.99337 0.96520 0.87050 1.19624 0.82958 0.93460 0.95033 1.00670 1.21203 0.91829 1.33259 1.08386 0.92992 1.25563 0.97044 0.96457 0.98889 1.70029 1.02373 1.42199 1.41244 0.85693 0.77379 0.79271 0.80048 1.20079 1.19772 1.21218 1.62476 1.10322 1.51497 1.01277 1.21932 0.98186 0.91620 0.93114 1.22522 0.99939 0.97089 0.88982 1.61925 1.06157 1.28182 1.32156 1.22354 0.98440 0.90002 1.01145 1.22465 0.86872 1.01223 1.01664 0.92863 0.90300 0.91873 0.91215 0.88670 0.85355 0.92053 0.93770 0.93055 0.90097 0.92364 0.93468 0.96245 0.95614 0.89345 0.93277 0.91083 0.89859 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.70 71.98 0.63 -2.76 16 2 C 0.04 1.28 2.25 44.93 0.10 1.38 16 3 H 0.02 0.58 6.79 -2.38 -0.02 0.57 16 4 C 0.07 2.29 6.00 86.31 0.52 2.81 16 5 N -0.70 -27.59 6.91 -513.41 -3.55 -31.14 16 6 C 0.08 3.96 5.82 86.31 0.50 4.46 16 7 C 0.20 9.77 1.23 44.17 0.05 9.83 16 8 H -0.02 -1.34 6.30 -2.39 -0.02 -1.35 16 9 C -0.51 -27.76 7.69 25.60 0.20 -27.56 16 10 H 0.05 2.91 6.70 -2.91 -0.02 2.89 16 11 C 0.02 1.08 5.28 84.65 0.45 1.53 16 12 N -0.92 -52.65 11.99 21.45 0.26 -52.39 16 13 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 17 N -0.53 -22.09 4.54 -849.76 -3.86 -25.95 16 18 C 0.08 3.11 4.49 86.31 0.39 3.50 16 19 C 0.04 1.71 4.27 86.31 0.37 2.07 16 20 N -0.56 -18.62 5.02 -948.83 -4.76 -23.38 16 21 C 0.03 0.84 9.57 127.69 1.22 2.07 16 22 C 0.03 0.64 9.32 127.69 1.19 1.83 16 23 H 0.05 1.34 6.51 -2.39 -0.02 1.32 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.33 12.88 8.89 -89.70 -0.80 12.08 16 29 H 0.06 3.31 6.80 -2.39 -0.02 3.30 16 30 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.08 2.68 4.59 -2.39 -0.01 2.67 16 33 H 0.06 2.62 6.54 -2.39 -0.02 2.60 16 34 H 0.05 2.26 6.00 -2.39 -0.01 2.25 16 35 H 0.02 0.72 6.89 -2.39 -0.02 0.71 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 39 H 0.07 1.75 6.58 -2.38 -0.02 1.74 16 40 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 41 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -60.12 306.17 -4.07 -64.19 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.20 Total: 23.02 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.61 Total: -0.84 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -11.91 Total: -132.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.12 -4.07 -64.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.077 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds