Wall clock time and date at job start Mon Mar 30 2020 04:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50304 * 2 1 4 4 C 1.53058 * 109.48732 * 239.95022 * 2 1 3 5 5 N 1.46957 * 109.36295 * 298.43311 * 4 2 1 6 6 C 1.46954 * 110.87704 * 300.68036 * 5 4 2 7 7 C 1.53048 * 109.36739 * 59.32293 * 6 5 4 8 8 H 1.08999 * 109.48771 * 61.56535 * 7 6 5 9 9 C 1.50705 * 109.48688 * 181.62942 * 7 6 5 10 10 H 1.07997 * 119.99843 * 119.89163 * 9 7 6 11 11 C 1.37872 * 120.00210 * 299.88523 * 9 7 6 12 12 N 1.31511 * 119.99975 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00034 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.46981 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46927 * 120.00627 * 13 11 9 16 16 H 1.48505 * 109.46927 * 240.00186 * 13 11 9 17 17 N 1.46950 * 109.49273 * 120.05824 * 2 1 3 18 18 C 1.46899 * 110.99934 * 296.77992 * 17 2 1 19 19 C 1.53001 * 109.46981 * 294.41001 * 18 17 2 20 20 N 1.46904 * 109.47037 * 184.92015 * 19 18 17 21 21 C 1.46901 * 110.99815 * 66.04824 * 20 19 18 22 22 C 1.46903 * 110.99690 * 190.00024 * 20 19 18 23 23 H 1.09002 * 109.46861 * 304.68331 * 1 2 3 24 24 H 1.08997 * 109.47246 * 64.68510 * 1 2 3 25 25 H 1.09000 * 109.46633 * 184.68396 * 1 2 3 26 26 H 1.09003 * 109.48608 * 58.39598 * 4 2 1 27 27 H 1.08999 * 109.48717 * 178.46337 * 4 2 1 28 28 H 1.00900 * 111.00000 * 176.80897 * 5 4 2 29 29 H 1.09005 * 109.48859 * 179.28766 * 6 5 4 30 30 H 1.09001 * 109.49045 * 299.32755 * 6 5 4 31 31 H 0.97001 * 120.00479 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.47086 * 54.40979 * 18 17 2 33 33 H 1.08999 * 109.47208 * 174.41277 * 18 17 2 34 34 H 1.08999 * 109.46996 * 304.92216 * 19 18 17 35 35 H 1.09004 * 109.46829 * 64.92255 * 19 18 17 36 36 H 1.09002 * 109.47143 * 60.00003 * 21 20 19 37 37 H 1.08998 * 109.47222 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47084 * 299.99827 * 21 20 19 39 39 H 1.08990 * 109.47213 * 60.00310 * 22 20 19 40 40 H 1.09000 * 109.46681 * 180.02562 * 22 20 19 41 41 H 1.08997 * 109.47188 * 300.00084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2490 5 7 1.5809 -2.1182 -1.2267 6 6 2.0712 -2.8120 -0.0276 7 6 1.5606 -2.0895 1.2213 8 1 0.4710 -2.1133 1.2352 9 6 2.0947 -2.7752 2.4524 10 1 2.7137 -2.2293 3.1489 11 6 1.7930 -4.0994 2.6897 12 7 1.0395 -4.7643 1.8414 13 14 2.4544 -4.9491 4.2161 14 1 3.2692 -3.9891 5.0032 15 1 1.3204 -5.4312 5.0448 16 1 3.2989 -6.1025 3.8138 17 7 2.0204 -0.6939 1.1990 18 6 1.6136 0.0140 2.4202 19 6 2.3013 1.3797 2.4711 20 7 1.9883 2.0384 3.7464 21 6 2.5790 1.3073 4.8754 22 6 2.4299 3.4394 3.7376 23 1 -0.3633 0.5848 0.8451 24 1 -0.3633 0.4394 -0.9289 25 1 -0.3632 -1.0243 0.0839 26 1 1.6543 -0.2266 -2.1394 27 1 3.1303 -0.6987 -1.2629 28 1 1.8603 -2.6044 -2.0655 29 1 1.7072 -3.8395 -0.0276 30 1 3.1612 -2.8124 -0.0278 31 1 0.8274 -5.6961 2.0080 32 1 0.5323 0.1516 2.4173 33 1 1.9030 -0.5713 3.2930 34 1 3.3798 1.2468 2.3860 35 1 1.9450 1.9969 1.6463 36 1 3.6620 1.2704 4.7576 37 1 2.3323 1.8165 5.8070 38 1 2.1813 0.2927 4.8992 39 1 1.9239 3.9748 2.9343 40 1 2.1863 3.9031 4.6935 41 1 3.5075 3.4798 3.5786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:26 Heat of formation + Delta-G solvation = 22.568432 kcal Electronic energy + Delta-G solvation = -18935.124741 eV Core-core repulsion = 16271.289307 eV Total energy + Delta-G solvation = -2663.835434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.86469 -36.99610 -33.61034 -33.17819 -30.47972 -29.02740 -27.37665 -26.41626 -25.33221 -24.18781 -22.14017 -21.53296 -19.99756 -17.63353 -16.77197 -15.82160 -15.15627 -14.95225 -14.65370 -14.37609 -14.15805 -13.53443 -13.42345 -13.03341 -12.78394 -12.47333 -12.20168 -12.02829 -11.66848 -11.49839 -11.42308 -11.08723 -10.98515 -10.86329 -10.60913 -10.38497 -10.32673 -10.03346 -9.89764 -9.32181 -8.87863 -8.47363 -8.11132 -7.55024 -7.04184 -6.03650 -4.08012 3.28074 3.36370 3.39983 4.15923 4.39558 5.07475 5.12675 5.31253 5.34592 5.38085 5.53282 5.61544 5.68236 5.78554 5.87913 5.90567 5.93341 6.02764 6.12657 6.17757 6.23813 6.34015 6.42359 6.52306 6.68759 6.80860 6.83582 6.95589 7.05613 7.24529 7.33523 7.43741 7.69586 7.77595 7.93888 8.16863 8.23633 8.38963 8.65038 9.00037 9.56977 11.02981 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.010104 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.484257 B = 2770.419974 C = 4170.174464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 H 0.064 0.936 4 C 0.068 3.932 5 N -0.693 5.693 6 C 0.068 3.932 7 C 0.222 3.778 8 H 0.016 0.984 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 N -0.532 5.532 18 C 0.064 3.936 19 C 0.059 3.941 20 N -0.548 5.548 21 C 0.022 3.978 22 C 0.027 3.973 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.323 0.677 29 H 0.106 0.894 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 10.612 -0.711 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.082 0.918 4 C -0.062 4.062 5 N -0.323 5.323 6 C -0.061 4.061 7 C 0.115 3.885 8 H 0.033 0.967 9 C -0.545 4.545 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 N -0.257 5.257 18 C -0.064 4.064 19 C -0.069 4.069 20 N -0.272 5.272 21 C -0.126 4.126 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.413 10.564 -0.404 10.666 hybrid contribution 1.331 -0.602 0.439 1.525 sum 2.744 9.963 0.035 10.334 Atomic orbital electron populations 1.22294 0.97758 1.03282 0.99896 1.21661 0.93091 0.96541 0.91621 0.91751 1.21883 0.96729 0.90929 0.96639 1.60708 1.63808 1.02050 1.05775 1.22303 0.95596 1.00309 0.87907 1.19241 0.94490 0.81551 0.93182 0.96672 1.21184 1.31335 0.95712 1.06312 0.91883 1.24944 0.95047 0.97389 0.96710 1.69886 1.37171 1.09977 1.35782 0.86496 0.78688 0.79517 0.83061 1.19779 1.21058 1.21071 1.62383 1.59268 1.04277 0.99754 1.21948 0.97066 0.92364 0.95064 1.22190 0.98694 0.96108 0.89942 1.61930 1.59354 1.02079 1.03860 1.22439 0.96940 1.00003 0.93255 1.22334 0.97829 0.89887 1.02078 0.93682 0.93767 0.90591 0.92261 0.95759 0.86098 0.87659 0.97163 0.92926 0.94963 0.89402 0.94447 0.91743 0.95809 0.92056 0.90337 0.91750 0.91811 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.32 37.16 0.31 -2.91 16 2 C 0.08 1.51 2.76 -67.65 -0.19 1.32 16 3 H 0.06 1.10 6.42 -51.93 -0.33 0.77 16 4 C 0.07 1.24 6.15 -3.76 -0.02 1.22 16 5 N -0.69 -13.98 6.30 -113.63 -0.72 -14.70 16 6 C 0.07 1.62 5.76 -3.77 -0.02 1.60 16 7 C 0.22 5.54 1.57 -68.81 -0.11 5.43 16 8 H 0.02 0.44 6.24 -51.93 -0.32 0.11 16 9 C -0.51 -13.62 7.81 -34.44 -0.27 -13.88 16 10 H 0.06 1.70 6.51 -52.49 -0.34 1.36 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -24.91 11.34 55.43 0.63 -24.28 16 13 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 N -0.53 -11.45 4.47 -219.94 -0.98 -12.44 16 18 C 0.06 1.28 4.58 -3.82 -0.02 1.26 16 19 C 0.06 0.98 4.75 -3.82 -0.02 0.96 16 20 N -0.55 -8.35 5.02 -251.26 -1.26 -9.61 16 21 C 0.02 0.32 9.33 60.07 0.56 0.88 16 22 C 0.03 0.33 9.57 60.07 0.57 0.91 16 23 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.65 5.84 -51.93 -0.30 1.34 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.32 5.76 8.90 -39.29 -0.35 5.41 16 29 H 0.11 2.80 6.13 -51.93 -0.32 2.48 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.03 0.68 6.23 -51.93 -0.32 0.35 16 33 H 0.09 1.92 4.20 -51.93 -0.22 1.71 16 34 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.06 1.03 6.64 -51.93 -0.34 0.68 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.08 1.26 6.37 -51.93 -0.33 0.93 16 39 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 41 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -27.85 303.61 -8.96 -36.82 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.89 Total: 5.28 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.71 Total: -1.66 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -2.33 Total: -61.03 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.85 -8.96 -36.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.384 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds