Wall clock time and date at job start Mon Mar 30 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50304 * 2 1 4 4 C 1.53058 * 109.48732 * 239.95022 * 2 1 3 5 5 N 1.46957 * 109.36295 * 298.43311 * 4 2 1 6 6 C 1.46954 * 110.87704 * 300.68036 * 5 4 2 7 7 C 1.53048 * 109.36739 * 59.32293 * 6 5 4 8 8 H 1.08999 * 109.48771 * 61.56535 * 7 6 5 9 9 C 1.50705 * 109.48688 * 181.62942 * 7 6 5 10 10 H 1.07997 * 119.99843 * 119.89163 * 9 7 6 11 11 C 1.37872 * 120.00210 * 299.88523 * 9 7 6 12 12 N 1.31511 * 119.99975 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00034 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.46981 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46927 * 120.00627 * 13 11 9 16 16 H 1.48505 * 109.46927 * 240.00186 * 13 11 9 17 17 N 1.46950 * 109.49273 * 120.05824 * 2 1 3 18 18 C 1.46899 * 110.99934 * 296.77992 * 17 2 1 19 19 C 1.53001 * 109.46981 * 294.41001 * 18 17 2 20 20 N 1.46904 * 109.47037 * 184.92015 * 19 18 17 21 21 C 1.46901 * 110.99815 * 66.04824 * 20 19 18 22 22 C 1.46903 * 110.99690 * 190.00024 * 20 19 18 23 23 H 1.09002 * 109.46861 * 304.68331 * 1 2 3 24 24 H 1.08997 * 109.47246 * 64.68510 * 1 2 3 25 25 H 1.09000 * 109.46633 * 184.68396 * 1 2 3 26 26 H 1.09003 * 109.48608 * 58.39598 * 4 2 1 27 27 H 1.08999 * 109.48717 * 178.46337 * 4 2 1 28 28 H 1.00900 * 111.00000 * 176.80897 * 5 4 2 29 29 H 1.09005 * 109.48859 * 179.28766 * 6 5 4 30 30 H 1.09001 * 109.49045 * 299.32755 * 6 5 4 31 31 H 0.97001 * 120.00479 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.47086 * 54.40979 * 18 17 2 33 33 H 1.08999 * 109.47208 * 174.41277 * 18 17 2 34 34 H 1.08999 * 109.46996 * 304.92216 * 19 18 17 35 35 H 1.09004 * 109.46829 * 64.92255 * 19 18 17 36 36 H 1.09002 * 109.47143 * 60.00003 * 21 20 19 37 37 H 1.08998 * 109.47222 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47084 * 299.99827 * 21 20 19 39 39 H 1.08990 * 109.47213 * 60.00310 * 22 20 19 40 40 H 1.09000 * 109.46681 * 180.02562 * 22 20 19 41 41 H 1.08997 * 109.47188 * 300.00084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2490 5 7 1.5809 -2.1182 -1.2267 6 6 2.0712 -2.8120 -0.0276 7 6 1.5606 -2.0895 1.2213 8 1 0.4710 -2.1133 1.2352 9 6 2.0947 -2.7752 2.4524 10 1 2.7137 -2.2293 3.1489 11 6 1.7930 -4.0994 2.6897 12 7 1.0395 -4.7643 1.8414 13 14 2.4544 -4.9491 4.2161 14 1 3.2692 -3.9891 5.0032 15 1 1.3204 -5.4312 5.0448 16 1 3.2989 -6.1025 3.8138 17 7 2.0204 -0.6939 1.1990 18 6 1.6136 0.0140 2.4202 19 6 2.3013 1.3797 2.4711 20 7 1.9883 2.0384 3.7464 21 6 2.5790 1.3073 4.8754 22 6 2.4299 3.4394 3.7376 23 1 -0.3633 0.5848 0.8451 24 1 -0.3633 0.4394 -0.9289 25 1 -0.3632 -1.0243 0.0839 26 1 1.6543 -0.2266 -2.1394 27 1 3.1303 -0.6987 -1.2629 28 1 1.8603 -2.6044 -2.0655 29 1 1.7072 -3.8395 -0.0276 30 1 3.1612 -2.8124 -0.0278 31 1 0.8274 -5.6961 2.0080 32 1 0.5323 0.1516 2.4173 33 1 1.9030 -0.5713 3.2930 34 1 3.3798 1.2468 2.3860 35 1 1.9450 1.9969 1.6463 36 1 3.6620 1.2704 4.7576 37 1 2.3323 1.8165 5.8070 38 1 2.1813 0.2927 4.8992 39 1 1.9239 3.9748 2.9343 40 1 2.1863 3.9031 4.6935 41 1 3.5075 3.4798 3.5786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:25 Heat of formation + Delta-G solvation = 0.611009 kcal Electronic energy + Delta-G solvation = -18936.076886 eV Core-core repulsion = 16271.289307 eV Total energy + Delta-G solvation = -2664.787579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50719 -38.27021 -35.23815 -35.14659 -32.25400 -30.57044 -28.47185 -28.02717 -27.19346 -25.73841 -23.57154 -23.31163 -21.47131 -19.35533 -18.66092 -17.55149 -16.56794 -16.43312 -16.31540 -15.76762 -15.62954 -15.20796 -15.09986 -14.63132 -14.32391 -13.99735 -13.82294 -13.30415 -13.20489 -12.88851 -12.77430 -12.67608 -12.58697 -12.42157 -12.27516 -12.15793 -11.96360 -11.77381 -11.70131 -10.99877 -10.80535 -10.52271 -9.29476 -9.22192 -8.80919 -8.11622 -6.23056 1.39462 1.41546 1.52704 2.41055 2.91185 3.14654 3.56934 3.60988 4.00948 4.11983 4.26202 4.34739 4.42492 4.47004 4.51974 4.65005 4.72330 4.74399 4.76498 4.78500 4.86979 4.89549 5.00737 5.02360 5.04472 5.12539 5.16066 5.28327 5.35656 5.56451 5.69781 5.79376 6.01605 6.14388 6.17362 6.31770 6.43039 6.72843 6.83396 6.93522 7.45845 8.94159 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.010104 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.484257 B = 2770.419974 C = 4170.174464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 H 0.093 0.907 4 C 0.068 3.932 5 N -0.695 5.695 6 C 0.083 3.917 7 C 0.231 3.769 8 H -0.024 1.024 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.015 3.985 12 N -0.915 5.915 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.280 1.280 17 N -0.538 5.538 18 C 0.071 3.929 19 C 0.074 3.926 20 N -0.561 5.561 21 C 0.024 3.976 22 C 0.028 3.972 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.096 0.904 27 H 0.025 0.975 28 H 0.339 0.661 29 H 0.075 0.925 30 H -0.005 1.005 31 H 0.262 0.738 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 12.582 -0.904 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 H 0.110 0.890 4 C -0.061 4.061 5 N -0.326 5.326 6 C -0.047 4.047 7 C 0.123 3.877 8 H -0.006 1.006 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.184 4.184 12 N -0.555 5.555 13 Si 0.781 3.219 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.206 1.206 17 N -0.263 5.263 18 C -0.057 4.057 19 C -0.054 4.054 20 N -0.286 5.286 21 C -0.124 4.124 22 C -0.120 4.120 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.043 0.957 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.013 0.987 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.061 12.561 -0.609 12.743 hybrid contribution 1.093 -1.152 0.480 1.660 sum 3.154 11.408 -0.129 11.837 Atomic orbital electron populations 1.22158 0.97544 1.01065 1.01326 1.21880 0.93279 0.97674 0.90614 0.88960 1.22016 0.96911 0.89455 0.97753 1.60595 1.63810 1.03254 1.04984 1.21884 0.94200 0.99138 0.89457 1.18945 0.91929 0.83799 0.93009 1.00630 1.21435 1.31256 0.96168 1.07145 0.92633 1.25679 0.95297 0.98026 0.99418 1.70017 1.38077 1.10170 1.37240 0.85539 0.78132 0.78436 0.79745 1.19255 1.20718 1.20552 1.62352 1.59326 1.03086 1.01502 1.21846 0.96466 0.93820 0.93576 1.21953 0.97644 0.94280 0.91508 1.61915 1.59974 1.03614 1.03073 1.22412 0.96787 0.99042 0.94203 1.22416 0.98266 0.87762 1.03579 0.93710 0.91001 0.94350 0.88590 0.95699 0.84412 0.90650 0.98683 0.92892 0.96393 0.91995 0.95143 0.90313 0.95697 0.89736 0.92819 0.90702 0.90085 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.32 71.98 0.60 -5.22 16 2 C 0.07 2.66 2.76 44.93 0.12 2.79 16 3 H 0.09 2.83 6.42 -2.39 -0.02 2.82 16 4 C 0.07 2.31 6.15 86.31 0.53 2.84 16 5 N -0.70 -27.67 6.30 -513.42 -3.24 -30.90 16 6 C 0.08 4.09 5.76 86.31 0.50 4.59 16 7 C 0.23 11.90 1.57 44.18 0.07 11.97 16 8 H -0.02 -1.40 6.24 -2.39 -0.01 -1.41 16 9 C -0.52 -28.97 7.81 25.60 0.20 -28.77 16 10 H 0.06 3.10 6.51 -2.91 -0.02 3.08 16 11 C 0.01 0.83 5.30 84.65 0.45 1.28 16 12 N -0.92 -52.92 11.34 21.45 0.24 -52.68 16 13 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 N -0.54 -23.26 4.47 -849.77 -3.80 -27.06 16 18 C 0.07 2.88 4.58 86.30 0.40 3.28 16 19 C 0.07 2.38 4.75 86.30 0.41 2.79 16 20 N -0.56 -16.12 5.02 -948.84 -4.76 -20.88 16 21 C 0.02 0.67 9.33 127.69 1.19 1.86 16 22 C 0.03 0.58 9.57 127.69 1.22 1.81 16 23 H 0.04 1.58 6.60 -2.39 -0.02 1.56 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.04 1.67 5.84 -2.39 -0.01 1.66 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.34 11.71 8.90 -89.69 -0.80 10.91 16 29 H 0.08 4.17 6.13 -2.38 -0.01 4.15 16 30 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.02 0.77 6.23 -2.39 -0.01 0.75 16 33 H 0.06 2.81 4.20 -2.39 -0.01 2.80 16 34 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.08 2.29 6.64 -2.38 -0.02 2.27 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 38 H 0.05 1.76 6.37 -2.39 -0.02 1.74 16 39 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 40 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -61.74 303.61 -3.63 -65.38 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.21 Total: 20.95 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.69 Total: -0.79 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -11.56 Total: -131.52 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.74 -3.63 -65.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.990 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds