Wall clock time and date at job start Mon Mar 30 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.51026 * 2 1 4 4 C 1.53056 * 109.49011 * 239.95061 * 2 1 3 5 5 N 1.46961 * 109.37752 * 298.42072 * 4 2 1 6 6 C 1.46900 * 111.01483 * 176.82945 * 5 4 2 7 7 C 1.53004 * 109.47186 * 293.81278 * 6 5 4 8 8 N 1.46910 * 109.46628 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00177 * 66.04866 * 8 7 6 10 10 C 1.46904 * 110.99256 * 190.00271 * 8 7 6 11 11 C 1.46956 * 110.88506 * 300.71030 * 5 4 2 12 12 H 1.08998 * 109.48749 * 299.31494 * 11 5 4 13 13 C 1.50697 * 109.49202 * 179.26383 * 11 5 4 14 14 H 1.08001 * 119.99634 * 356.16910 * 13 11 5 15 15 C 1.37876 * 120.00253 * 176.16423 * 13 11 5 16 16 N 1.31521 * 119.99505 * 352.62765 * 15 13 11 17 17 Si 1.86793 * 120.00219 * 172.62577 * 15 13 11 18 18 H 1.48496 * 109.47669 * 265.07758 * 17 15 13 19 19 H 1.48505 * 109.47301 * 145.07778 * 17 15 13 20 20 H 1.48503 * 109.47270 * 25.08071 * 17 15 13 21 21 C 1.53052 * 109.37669 * 59.29017 * 11 5 4 22 22 N 1.46955 * 109.49111 * 120.05732 * 2 1 3 23 23 H 1.09002 * 109.47012 * 299.94370 * 1 2 3 24 24 H 1.09002 * 109.46989 * 59.94492 * 1 2 3 25 25 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.48837 * 58.39640 * 4 2 1 27 27 H 1.08995 * 109.49321 * 178.45000 * 4 2 1 28 28 H 1.08994 * 109.47427 * 53.81719 * 6 5 4 29 29 H 1.09000 * 109.47212 * 173.81471 * 6 5 4 30 30 H 1.08996 * 109.47387 * 299.99981 * 7 6 5 31 31 H 1.08994 * 109.46928 * 60.00703 * 7 6 5 32 32 H 1.08997 * 109.46960 * 59.99723 * 9 8 7 33 33 H 1.08998 * 109.47234 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46898 * 299.99905 * 9 8 7 35 35 H 1.09000 * 109.47550 * 60.00329 * 10 8 7 36 36 H 1.09004 * 109.46541 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46984 * 299.99498 * 10 8 7 38 38 H 0.97003 * 119.99661 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.49257 * 61.57725 * 21 11 5 40 40 H 1.09001 * 109.48502 * 181.64682 * 21 11 5 41 41 H 1.00899 * 111.00207 * 184.51148 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5813 -2.1183 -1.2268 6 6 1.9885 -2.8263 -2.4478 7 6 1.2606 -2.2260 -3.6523 8 7 1.6675 -2.9345 -4.8732 9 6 1.2106 -4.3304 -4.8489 10 6 1.1778 -2.2410 -6.0721 11 6 2.0712 -2.8121 -0.0275 12 1 3.1611 -2.8124 -0.0274 13 6 1.5679 -4.2326 -0.0276 14 1 0.8963 -4.5674 -0.8042 15 6 1.9649 -5.1047 0.9638 16 7 2.8921 -4.7441 1.8241 17 14 1.1860 -6.7981 1.0850 18 1 0.0647 -6.7588 2.0577 19 1 2.2030 -7.7793 1.5415 20 1 0.6712 -7.2028 -0.2479 21 6 1.5605 -2.0896 1.2213 22 7 2.0203 -0.6939 1.1990 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6543 -0.2266 -2.1394 27 1 3.1302 -0.6985 -1.2630 28 1 3.0649 -2.7236 -2.5856 29 1 1.7329 -3.8821 -2.3580 30 1 0.1843 -2.3287 -3.5147 31 1 1.5164 -1.1703 -3.7422 32 1 0.1234 -4.3556 -4.7761 33 1 1.5248 -4.8316 -5.7645 34 1 1.6443 -4.8397 -3.9883 35 1 1.5878 -1.2315 -6.1009 36 1 1.4927 -2.7869 -6.9616 37 1 0.0894 -2.1906 -6.0436 38 1 3.1712 -5.3576 2.5218 39 1 0.4709 -2.1133 1.2352 40 1 1.9468 -2.5855 2.1118 41 1 3.0262 -0.6436 1.2600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:54 Heat of formation + Delta-G solvation = 16.835575 kcal Electronic energy + Delta-G solvation = -18826.098785 eV Core-core repulsion = 16162.014756 eV Total energy + Delta-G solvation = -2664.084029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.84452 -37.12445 -33.91849 -32.98196 -30.41715 -28.74518 -27.47994 -27.12406 -24.83958 -24.40307 -22.38528 -20.99118 -20.10950 -18.37705 -16.48749 -15.93866 -15.29829 -14.93734 -14.68081 -14.57322 -14.06140 -13.67047 -13.43226 -13.14323 -12.75755 -12.22529 -12.08463 -11.96890 -11.68014 -11.51766 -11.46614 -11.22254 -11.01425 -10.77633 -10.70591 -10.48916 -10.42601 -10.08157 -9.94834 -9.63885 -9.17590 -8.51479 -8.15337 -7.52437 -7.14306 -6.09483 -4.10107 3.27764 3.35303 3.37534 4.11001 4.37625 4.95603 5.13929 5.24449 5.30938 5.34336 5.49531 5.61865 5.68658 5.73859 5.76260 5.85145 5.87843 5.96560 6.07519 6.17180 6.20552 6.28363 6.38333 6.53615 6.62805 6.70323 6.75796 6.95070 7.00287 7.20630 7.23423 7.28177 7.61177 7.73202 7.86260 8.08263 8.14303 8.32728 8.55633 8.95605 9.53337 10.99439 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.010006 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.928337 B = 2797.732738 C = 4232.185366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.022 3.978 5 N -0.528 5.528 6 C 0.068 3.932 7 C 0.059 3.941 8 N -0.549 5.549 9 C 0.022 3.978 10 C 0.027 3.973 11 C 0.188 3.812 12 H 0.002 0.998 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.069 3.931 22 N -0.693 5.693 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 5.726 -9.139 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.024 4.024 3 H 0.084 0.916 4 C -0.109 4.109 5 N -0.253 5.253 6 C -0.061 4.061 7 C -0.069 4.069 8 N -0.273 5.273 9 C -0.126 4.126 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.020 0.980 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.060 4.060 22 N -0.321 5.321 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.261 5.888 -8.547 10.879 hybrid contribution 0.288 -1.343 -0.656 1.522 sum -2.973 4.545 -9.202 10.686 Atomic orbital electron populations 1.21683 0.94520 1.03146 0.99624 1.21518 0.96326 0.96115 0.88403 0.91597 1.22835 0.96576 0.92370 0.99104 1.62104 1.59828 1.00203 1.03197 1.21918 0.96252 0.99931 0.87971 1.22181 0.98123 0.97456 0.89117 1.61935 1.60117 1.02778 1.02500 1.22433 0.97973 0.89478 1.02723 1.22338 0.97496 0.99267 0.93027 1.19870 0.93531 0.93060 0.85512 0.98043 1.21020 1.28262 0.94217 1.10952 0.91925 1.24935 0.94637 0.98476 0.95911 1.69939 1.28646 1.36646 1.17644 0.86543 0.79091 0.83779 0.78371 1.20612 1.21361 1.19919 1.22240 0.99680 0.83986 1.00100 1.60967 1.15484 1.17810 1.37885 0.93450 0.93779 0.90728 0.92068 0.96424 0.95762 0.89253 0.94368 0.91697 0.95761 0.92027 0.90410 0.91757 0.91786 0.96000 0.92841 0.92036 0.89128 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.84 37.16 0.33 -1.91 16 2 C 0.09 1.54 3.69 -67.66 -0.25 1.29 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.02 0.40 4.83 -3.76 -0.02 0.38 16 5 N -0.53 -11.05 3.84 -227.88 -0.87 -11.92 16 6 C 0.07 1.35 4.67 -3.82 -0.02 1.33 16 7 C 0.06 0.98 4.89 -3.82 -0.02 0.96 16 8 N -0.55 -8.29 5.02 -251.25 -1.26 -9.55 16 9 C 0.02 0.32 9.32 60.06 0.56 0.88 16 10 C 0.03 0.33 9.57 60.07 0.57 0.90 16 11 C 0.19 4.58 1.82 -68.81 -0.13 4.46 16 12 H 0.00 0.05 8.13 -51.93 -0.42 -0.37 16 13 C -0.51 -13.39 7.64 -34.44 -0.26 -13.65 16 14 H 0.06 1.67 6.69 -52.49 -0.35 1.32 16 15 C 0.06 1.68 5.24 -17.82 -0.09 1.59 16 16 N -0.89 -24.83 11.97 55.43 0.66 -24.17 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.07 1.61 5.42 -3.76 -0.02 1.59 16 22 N -0.69 -13.83 6.70 -106.58 -0.71 -14.54 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.45 5.94 -51.93 -0.31 1.14 16 26 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.09 1.95 4.47 -51.93 -0.23 1.72 16 30 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 31 H 0.06 1.03 6.42 -51.93 -0.33 0.69 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 34 H 0.08 1.24 6.47 -51.93 -0.34 0.90 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.48 6.34 -51.93 -0.33 1.15 16 40 H 0.09 2.36 6.73 -51.93 -0.35 2.01 16 41 H 0.33 6.45 8.89 -39.29 -0.35 6.10 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -27.15 308.53 -9.02 -36.17 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.12 Total: 5.64 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.66 Total: -2.19 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -2.19 Total: -60.19 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.15 -9.02 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.006 kcal (2) G-P(sol) polarization free energy of solvation -27.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds