Wall clock time and date at job start Mon Mar 30 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.51026 * 2 1 4 4 C 1.53056 * 109.49011 * 239.95061 * 2 1 3 5 5 N 1.46961 * 109.37752 * 298.42072 * 4 2 1 6 6 C 1.46900 * 111.01483 * 176.82945 * 5 4 2 7 7 C 1.53004 * 109.47186 * 293.81278 * 6 5 4 8 8 N 1.46910 * 109.46628 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00177 * 66.04866 * 8 7 6 10 10 C 1.46904 * 110.99256 * 190.00271 * 8 7 6 11 11 C 1.46956 * 110.88506 * 300.71030 * 5 4 2 12 12 H 1.08998 * 109.48749 * 299.31494 * 11 5 4 13 13 C 1.50697 * 109.49202 * 179.26383 * 11 5 4 14 14 H 1.08001 * 119.99634 * 356.16910 * 13 11 5 15 15 C 1.37876 * 120.00253 * 176.16423 * 13 11 5 16 16 N 1.31521 * 119.99505 * 352.62765 * 15 13 11 17 17 Si 1.86793 * 120.00219 * 172.62577 * 15 13 11 18 18 H 1.48496 * 109.47669 * 265.07758 * 17 15 13 19 19 H 1.48505 * 109.47301 * 145.07778 * 17 15 13 20 20 H 1.48503 * 109.47270 * 25.08071 * 17 15 13 21 21 C 1.53052 * 109.37669 * 59.29017 * 11 5 4 22 22 N 1.46955 * 109.49111 * 120.05732 * 2 1 3 23 23 H 1.09002 * 109.47012 * 299.94370 * 1 2 3 24 24 H 1.09002 * 109.46989 * 59.94492 * 1 2 3 25 25 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.48837 * 58.39640 * 4 2 1 27 27 H 1.08995 * 109.49321 * 178.45000 * 4 2 1 28 28 H 1.08994 * 109.47427 * 53.81719 * 6 5 4 29 29 H 1.09000 * 109.47212 * 173.81471 * 6 5 4 30 30 H 1.08996 * 109.47387 * 299.99981 * 7 6 5 31 31 H 1.08994 * 109.46928 * 60.00703 * 7 6 5 32 32 H 1.08997 * 109.46960 * 59.99723 * 9 8 7 33 33 H 1.08998 * 109.47234 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46898 * 299.99905 * 9 8 7 35 35 H 1.09000 * 109.47550 * 60.00329 * 10 8 7 36 36 H 1.09004 * 109.46541 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46984 * 299.99498 * 10 8 7 38 38 H 0.97003 * 119.99661 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.49257 * 61.57725 * 21 11 5 40 40 H 1.09001 * 109.48502 * 181.64682 * 21 11 5 41 41 H 1.00899 * 111.00207 * 184.51148 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5813 -2.1183 -1.2268 6 6 1.9885 -2.8263 -2.4478 7 6 1.2606 -2.2260 -3.6523 8 7 1.6675 -2.9345 -4.8732 9 6 1.2106 -4.3304 -4.8489 10 6 1.1778 -2.2410 -6.0721 11 6 2.0712 -2.8121 -0.0275 12 1 3.1611 -2.8124 -0.0274 13 6 1.5679 -4.2326 -0.0276 14 1 0.8963 -4.5674 -0.8042 15 6 1.9649 -5.1047 0.9638 16 7 2.8921 -4.7441 1.8241 17 14 1.1860 -6.7981 1.0850 18 1 0.0647 -6.7588 2.0577 19 1 2.2030 -7.7793 1.5415 20 1 0.6712 -7.2028 -0.2479 21 6 1.5605 -2.0896 1.2213 22 7 2.0203 -0.6939 1.1990 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6543 -0.2266 -2.1394 27 1 3.1302 -0.6985 -1.2630 28 1 3.0649 -2.7236 -2.5856 29 1 1.7329 -3.8821 -2.3580 30 1 0.1843 -2.3287 -3.5147 31 1 1.5164 -1.1703 -3.7422 32 1 0.1234 -4.3556 -4.7761 33 1 1.5248 -4.8316 -5.7645 34 1 1.6443 -4.8397 -3.9883 35 1 1.5878 -1.2315 -6.1009 36 1 1.4927 -2.7869 -6.9616 37 1 0.0894 -2.1906 -6.0436 38 1 3.1712 -5.3576 2.5218 39 1 0.4709 -2.1133 1.2352 40 1 1.9468 -2.5855 2.1118 41 1 3.0262 -0.6436 1.2600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:54 Heat of formation + Delta-G solvation = -3.983797 kcal Electronic energy + Delta-G solvation = -18827.001581 eV Core-core repulsion = 16162.014756 eV Total energy + Delta-G solvation = -2664.986825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48615 -38.38548 -35.57897 -34.87266 -32.18920 -30.21427 -28.88417 -28.43026 -26.59577 -26.00823 -23.84114 -22.72094 -21.54073 -20.02170 -18.50383 -17.54197 -16.77252 -16.44268 -16.15531 -15.97674 -15.55004 -15.33118 -15.00029 -14.81923 -14.21052 -13.82308 -13.57850 -13.27806 -13.19060 -12.89731 -12.80565 -12.64800 -12.57665 -12.54936 -12.21292 -12.16634 -12.06399 -11.84550 -11.65962 -11.42407 -10.96656 -10.58191 -9.32394 -9.23932 -8.89457 -8.16951 -6.23897 1.39543 1.41623 1.50837 2.39821 2.84892 3.13384 3.44154 3.59329 3.97945 4.19076 4.22187 4.26191 4.39094 4.44182 4.49181 4.60218 4.66155 4.70111 4.74524 4.78041 4.86597 4.92984 4.98995 5.00688 5.04756 5.09277 5.17622 5.25660 5.34006 5.53502 5.63843 5.70535 5.95980 6.05735 6.14173 6.27393 6.39354 6.59644 6.70984 6.90143 7.42992 8.91302 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.010006 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.928337 B = 2797.732738 C = 4232.185366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.084 3.916 3 H 0.099 0.901 4 C 0.022 3.978 5 N -0.528 5.528 6 C 0.075 3.925 7 C 0.076 3.924 8 N -0.564 5.564 9 C 0.024 3.976 10 C 0.028 3.972 11 C 0.197 3.803 12 H -0.042 1.042 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.017 3.983 16 N -0.918 5.918 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.087 3.913 22 N -0.690 5.690 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.008 0.992 28 H 0.005 0.995 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 6.838 -10.722 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.026 4.026 3 H 0.117 0.883 4 C -0.107 4.107 5 N -0.253 5.253 6 C -0.054 4.054 7 C -0.053 4.053 8 N -0.288 5.288 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.089 3.911 12 H -0.025 1.025 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.183 4.183 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.043 4.043 22 N -0.318 5.318 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.328 7.019 -10.155 13.081 hybrid contribution 0.653 -1.645 -0.223 1.784 sum -3.675 5.374 -10.378 12.251 Atomic orbital electron populations 1.21619 0.93631 1.01688 1.01362 1.21745 0.97028 0.97129 0.86686 0.88305 1.22936 0.96147 0.90781 1.00882 1.62097 1.59469 1.01448 1.02300 1.21832 0.95490 0.98912 0.89172 1.21938 0.97082 0.97884 0.88359 1.61918 1.60785 1.03173 1.02946 1.22407 0.97946 0.89293 1.02770 1.22417 0.97938 0.99707 0.91948 1.19627 0.90719 0.93056 0.87734 1.02468 1.21259 1.28008 0.95595 1.10743 0.92624 1.25663 0.95000 1.01966 0.95635 1.70058 1.29709 1.37815 1.18152 0.85594 0.78261 0.79626 0.78493 1.20068 1.21107 1.19323 1.21816 0.98735 0.85656 0.98078 1.60935 1.15623 1.15605 1.39602 0.92716 0.91069 0.93698 0.89222 0.97377 0.97694 0.91818 0.94789 0.90337 0.95492 0.89756 0.92925 0.90761 0.90091 0.95355 0.92868 0.92793 0.92336 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.84 71.98 0.64 -3.30 16 2 C 0.08 2.79 3.69 44.92 0.17 2.95 16 3 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 4 C 0.02 0.79 4.83 86.31 0.42 1.20 16 5 N -0.53 -22.23 3.84 -874.87 -3.36 -25.59 16 6 C 0.07 3.01 4.67 86.30 0.40 3.41 16 7 C 0.08 2.39 4.89 86.30 0.42 2.81 16 8 N -0.56 -16.06 5.02 -948.82 -4.76 -20.82 16 9 C 0.02 0.66 9.32 127.69 1.19 1.85 16 10 C 0.03 0.58 9.57 127.69 1.22 1.80 16 11 C 0.20 9.97 1.82 44.17 0.08 10.05 16 12 H -0.04 -2.46 8.13 -2.39 -0.02 -2.48 16 13 C -0.52 -28.30 7.64 25.60 0.20 -28.10 16 14 H 0.06 3.06 6.69 -2.91 -0.02 3.04 16 15 C 0.02 0.93 5.24 84.65 0.44 1.37 16 16 N -0.92 -52.89 11.97 21.45 0.26 -52.63 16 17 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.09 4.17 5.42 86.31 0.47 4.64 16 22 N -0.69 -27.29 6.70 -491.11 -3.29 -30.58 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.68 5.94 -2.39 -0.01 1.67 16 26 H 0.09 2.67 6.34 -2.39 -0.02 2.65 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.00 0.21 8.12 -2.39 -0.02 0.19 16 29 H 0.06 2.89 4.47 -2.39 -0.01 2.88 16 30 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 31 H 0.08 2.26 6.42 -2.39 -0.02 2.25 16 32 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 34 H 0.05 1.70 6.47 -2.39 -0.02 1.68 16 35 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.08 1.43 8.12 -2.38 -0.02 1.41 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.05 2.64 6.34 -2.39 -0.02 2.63 16 40 H 0.06 3.17 6.73 -2.39 -0.02 3.15 16 41 H 0.33 12.98 8.89 -89.69 -0.80 12.19 16 Total: -1.00 -60.04 308.53 -3.28 -63.32 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.20 Total: 21.90 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.64 Total: -1.31 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -11.15 Total: -129.62 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.04 -3.28 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.335 kcal (2) G-P(sol) polarization free energy of solvation -60.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds