Wall clock time and date at job start Mon Mar 30 2020 04:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53052 * 109.50607 * 120.05620 * 2 1 3 5 5 N 1.46952 * 109.36452 * 178.37830 * 4 2 1 6 6 C 1.46899 * 111.00198 * 176.81111 * 5 4 2 7 7 C 1.52998 * 109.47056 * 293.79958 * 6 5 4 8 8 N 1.46907 * 109.47109 * 179.97438 * 7 6 5 9 9 C 1.46903 * 110.99424 * 66.04804 * 8 7 6 10 10 C 1.46900 * 111.00122 * 189.99926 * 8 7 6 11 11 C 1.46964 * 110.87911 * 300.67995 * 5 4 2 12 12 H 1.09002 * 109.48740 * 299.35313 * 11 5 4 13 13 C 1.50703 * 109.50568 * 179.30128 * 11 5 4 14 14 H 1.08003 * 119.99895 * 0.09507 * 13 11 5 15 15 C 1.37875 * 119.99961 * 180.09594 * 13 11 5 16 16 N 1.31511 * 119.99881 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 119.99974 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47312 * 89.99854 * 17 15 13 19 19 H 1.48505 * 109.47098 * 209.99943 * 17 15 13 20 20 H 1.48504 * 109.47306 * 329.99779 * 17 15 13 21 21 C 1.53044 * 109.36663 * 59.32266 * 11 5 4 22 22 N 1.46954 * 109.48655 * 239.95662 * 2 1 3 23 23 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 25 25 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 26 26 H 1.08999 * 109.48549 * 298.34468 * 4 2 1 27 27 H 1.08996 * 109.48872 * 58.41254 * 4 2 1 28 28 H 1.09003 * 109.46913 * 53.79445 * 6 5 4 29 29 H 1.08994 * 109.47312 * 173.79531 * 6 5 4 30 30 H 1.08992 * 109.47270 * 299.99535 * 7 6 5 31 31 H 1.08997 * 109.47096 * 60.00062 * 7 6 5 32 32 H 1.09002 * 109.47386 * 59.99990 * 9 8 7 33 33 H 1.09008 * 109.46504 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47022 * 299.99622 * 9 8 7 35 35 H 1.09002 * 109.46988 * 59.99727 * 10 8 7 36 36 H 1.08993 * 109.47023 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47178 * 300.00584 * 10 8 7 38 38 H 0.97007 * 120.00114 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.49104 * 181.63438 * 21 11 5 40 40 H 1.08996 * 109.48986 * 61.56231 * 21 11 5 41 41 H 1.00900 * 110.99890 * 56.82541 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7226 1.2487 5 7 3.5100 -0.7548 1.2261 6 6 4.0419 -1.3746 2.4470 7 6 3.7191 -0.4879 3.6514 8 7 4.2505 -1.1080 4.8725 9 6 5.7189 -1.1440 4.8485 10 6 3.7604 -0.4147 6.0713 11 6 4.0003 -1.4484 0.0267 12 1 3.6366 -2.4760 0.0267 13 6 5.5073 -1.4485 0.0262 14 1 6.0476 -0.9816 0.8365 15 6 6.1963 -2.0446 -1.0086 16 7 7.5114 -2.0443 -1.0093 17 14 5.2618 -2.8515 -2.4103 18 1 5.0145 -1.8521 -3.4805 19 1 6.0638 -3.9750 -2.9580 20 1 3.9641 -3.3691 -1.9070 21 6 3.4893 -0.7259 -1.2219 22 7 2.0202 -0.6936 -1.1992 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7026 -0.1930 2.1393 27 1 1.6551 -1.7418 1.2625 28 1 3.5859 -2.3550 2.5851 29 1 5.1224 -1.4860 2.3570 30 1 4.1751 0.4924 3.5134 31 1 2.6386 -0.3766 3.7414 32 1 6.1061 -0.1276 4.7756 33 1 6.0860 -1.6075 5.7643 34 1 6.0541 -1.7231 3.9880 35 1 2.6719 -0.4635 6.0997 36 1 4.1693 -0.8938 6.9608 37 1 4.0766 0.6281 6.0427 38 1 7.9962 -2.4633 -1.7376 39 1 3.8277 -1.2554 -2.1125 40 1 3.8752 0.2934 -1.2357 41 1 1.6549 -0.2678 -2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220493044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:57 Heat of formation + Delta-G solvation = 25.026292 kcal Electronic energy + Delta-G solvation = -18682.343394 eV Core-core repulsion = 16018.614541 eV Total energy + Delta-G solvation = -2663.728853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.79823 -37.10361 -34.28981 -33.00717 -31.32713 -29.01606 -27.65415 -27.24353 -25.14415 -23.77090 -22.60930 -20.86534 -20.14048 -18.89312 -16.91943 -16.07083 -15.21810 -15.16081 -14.72141 -14.55673 -14.16408 -13.97935 -13.52906 -13.05170 -12.95408 -12.83816 -12.38849 -12.11199 -11.89336 -11.79738 -11.52454 -11.46641 -11.31496 -10.90420 -10.78631 -10.47300 -10.31343 -10.25486 -9.86835 -9.41251 -9.08027 -8.58209 -8.12457 -7.90590 -7.34281 -6.10573 -4.10256 3.24908 3.38035 3.44605 4.11680 4.37657 4.69049 4.86595 5.21202 5.26854 5.31250 5.36608 5.52056 5.58408 5.67765 5.68115 5.84232 5.89051 5.89453 5.94628 5.99665 6.05347 6.18932 6.23002 6.25505 6.28423 6.37140 6.50406 6.56965 6.65229 6.88587 7.17209 7.23045 7.30820 7.40929 7.69691 7.85023 7.94850 8.12577 8.63029 8.94868 9.50933 11.01540 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.009571 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.737006 B = 2924.776303 C = 4357.434061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.040 0.960 4 C 0.060 3.940 5 N -0.528 5.528 6 C 0.066 3.934 7 C 0.059 3.941 8 N -0.548 5.548 9 C 0.021 3.979 10 C 0.027 3.973 11 C 0.194 3.806 12 H 0.008 0.992 13 C -0.509 4.509 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.879 3.121 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.259 1.259 21 C 0.058 3.942 22 N -0.694 5.694 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 3.796 7.084 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.058 0.942 4 C -0.069 4.069 5 N -0.253 5.253 6 C -0.062 4.062 7 C -0.069 4.069 8 N -0.273 5.273 9 C -0.127 4.127 10 C -0.121 4.121 11 C 0.086 3.914 12 H 0.025 0.975 13 C -0.547 4.547 14 H 0.101 0.899 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.708 3.292 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.184 1.184 21 C -0.071 4.071 22 N -0.325 5.325 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.142 3.107 7.274 12.862 hybrid contribution -0.157 0.570 -1.164 1.306 sum -10.298 3.677 6.110 12.526 Atomic orbital electron populations 1.21782 0.95025 1.02128 1.01053 1.21452 0.93871 0.95825 0.91223 0.94156 1.22162 0.89913 0.98620 0.96207 1.61968 1.05406 1.55005 1.02935 1.21967 1.02575 0.94254 0.87430 1.22166 0.99121 0.96471 0.89147 1.61939 1.09230 1.53741 1.02375 1.22453 0.87020 1.00337 1.02875 1.22338 1.00578 0.96160 0.93068 1.19661 0.95632 0.91181 0.84881 0.97494 1.20967 0.88032 1.36656 1.09078 0.89871 1.24921 0.94751 0.95492 0.97838 1.69874 1.06135 1.44542 1.32837 0.86980 0.80366 0.79028 0.82781 1.20663 1.22292 1.18378 1.22558 0.84585 1.00000 0.99942 1.60697 1.10543 1.57435 1.03815 0.92099 0.92509 0.93032 0.91617 0.95045 0.95313 0.88594 0.94275 0.91687 0.95676 0.91997 0.90180 0.91790 0.91741 0.95996 0.92547 0.92073 0.94411 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.46 37.16 0.35 -1.47 16 2 C 0.09 1.44 3.19 -67.66 -0.22 1.22 16 3 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.06 1.07 4.69 -3.77 -0.02 1.06 16 5 N -0.53 -11.17 4.52 -227.88 -1.03 -12.20 16 6 C 0.07 1.31 4.67 -3.83 -0.02 1.29 16 7 C 0.06 0.97 4.89 -3.82 -0.02 0.95 16 8 N -0.55 -8.33 5.02 -251.25 -1.26 -9.59 16 9 C 0.02 0.32 9.32 60.07 0.56 0.88 16 10 C 0.03 0.33 9.57 60.06 0.57 0.90 16 11 C 0.19 4.71 1.54 -68.81 -0.11 4.60 16 12 H 0.01 0.20 7.20 -51.93 -0.37 -0.18 16 13 C -0.51 -14.09 8.38 -34.44 -0.29 -14.38 16 14 H 0.08 2.49 6.75 -52.48 -0.35 2.13 16 15 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 16 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.88 21.86 24.36 -169.99 -4.14 17.72 16 18 H -0.28 -6.75 6.88 56.52 0.39 -6.36 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 21 C 0.06 1.30 5.46 -3.77 -0.02 1.27 16 22 N -0.69 -13.01 6.55 -106.59 -0.70 -13.71 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.10 2.15 4.40 -51.93 -0.23 1.92 16 30 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.06 1.00 6.41 -51.93 -0.33 0.67 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.79 8.12 -51.92 -0.42 0.36 16 34 H 0.08 1.33 6.47 -51.93 -0.34 1.00 16 35 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 1.44 3.31 -51.93 -0.17 1.26 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.33 5.32 8.83 -39.29 -0.35 4.97 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -29.80 305.33 -8.19 -38.00 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.14 Total: 3.03 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 0.70 Total: -1.71 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -2.21 Total: -61.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.80 -8.19 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.022 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds