Wall clock time and date at job start Mon Mar 30 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53052 * 109.50607 * 120.05620 * 2 1 3 5 5 N 1.46952 * 109.36452 * 178.37830 * 4 2 1 6 6 C 1.46899 * 111.00198 * 176.81111 * 5 4 2 7 7 C 1.52998 * 109.47056 * 293.79958 * 6 5 4 8 8 N 1.46907 * 109.47109 * 179.97438 * 7 6 5 9 9 C 1.46903 * 110.99424 * 66.04804 * 8 7 6 10 10 C 1.46900 * 111.00122 * 189.99926 * 8 7 6 11 11 C 1.46964 * 110.87911 * 300.67995 * 5 4 2 12 12 H 1.09002 * 109.48740 * 299.35313 * 11 5 4 13 13 C 1.50703 * 109.50568 * 179.30128 * 11 5 4 14 14 H 1.08003 * 119.99895 * 0.09507 * 13 11 5 15 15 C 1.37875 * 119.99961 * 180.09594 * 13 11 5 16 16 N 1.31511 * 119.99881 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 119.99974 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47312 * 89.99854 * 17 15 13 19 19 H 1.48505 * 109.47098 * 209.99943 * 17 15 13 20 20 H 1.48504 * 109.47306 * 329.99779 * 17 15 13 21 21 C 1.53044 * 109.36663 * 59.32266 * 11 5 4 22 22 N 1.46954 * 109.48655 * 239.95662 * 2 1 3 23 23 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 25 25 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 26 26 H 1.08999 * 109.48549 * 298.34468 * 4 2 1 27 27 H 1.08996 * 109.48872 * 58.41254 * 4 2 1 28 28 H 1.09003 * 109.46913 * 53.79445 * 6 5 4 29 29 H 1.08994 * 109.47312 * 173.79531 * 6 5 4 30 30 H 1.08992 * 109.47270 * 299.99535 * 7 6 5 31 31 H 1.08997 * 109.47096 * 60.00062 * 7 6 5 32 32 H 1.09002 * 109.47386 * 59.99990 * 9 8 7 33 33 H 1.09008 * 109.46504 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47022 * 299.99622 * 9 8 7 35 35 H 1.09002 * 109.46988 * 59.99727 * 10 8 7 36 36 H 1.08993 * 109.47023 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47178 * 300.00584 * 10 8 7 38 38 H 0.97007 * 120.00114 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.49104 * 181.63438 * 21 11 5 40 40 H 1.08996 * 109.48986 * 61.56231 * 21 11 5 41 41 H 1.00900 * 110.99890 * 56.82541 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7226 1.2487 5 7 3.5100 -0.7548 1.2261 6 6 4.0419 -1.3746 2.4470 7 6 3.7191 -0.4879 3.6514 8 7 4.2505 -1.1080 4.8725 9 6 5.7189 -1.1440 4.8485 10 6 3.7604 -0.4147 6.0713 11 6 4.0003 -1.4484 0.0267 12 1 3.6366 -2.4760 0.0267 13 6 5.5073 -1.4485 0.0262 14 1 6.0476 -0.9816 0.8365 15 6 6.1963 -2.0446 -1.0086 16 7 7.5114 -2.0443 -1.0093 17 14 5.2618 -2.8515 -2.4103 18 1 5.0145 -1.8521 -3.4805 19 1 6.0638 -3.9750 -2.9580 20 1 3.9641 -3.3691 -1.9070 21 6 3.4893 -0.7259 -1.2219 22 7 2.0202 -0.6936 -1.1992 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7026 -0.1930 2.1393 27 1 1.6551 -1.7418 1.2625 28 1 3.5859 -2.3550 2.5851 29 1 5.1224 -1.4860 2.3570 30 1 4.1751 0.4924 3.5134 31 1 2.6386 -0.3766 3.7414 32 1 6.1061 -0.1276 4.7756 33 1 6.0860 -1.6075 5.7643 34 1 6.0541 -1.7231 3.9880 35 1 2.6719 -0.4635 6.0997 36 1 4.1693 -0.8938 6.9608 37 1 4.0766 0.6281 6.0427 38 1 7.9962 -2.4633 -1.7376 39 1 3.8277 -1.2554 -2.1125 40 1 3.8752 0.2934 -1.2357 41 1 1.6549 -0.2678 -2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220493044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:56 Heat of formation + Delta-G solvation = -0.279180 kcal Electronic energy + Delta-G solvation = -18683.440721 eV Core-core repulsion = 16018.614541 eV Total energy + Delta-G solvation = -2664.826181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39330 -38.37950 -35.85047 -34.93641 -33.09277 -30.49976 -29.16820 -28.44878 -26.56622 -25.59513 -24.03150 -22.44534 -21.56517 -20.54353 -19.00407 -17.74289 -16.62128 -16.49494 -16.18291 -16.07248 -15.71782 -15.57113 -15.19908 -14.83522 -14.46343 -14.26854 -13.97482 -13.36494 -13.26271 -12.98532 -12.93816 -12.77727 -12.59779 -12.47869 -12.36261 -12.22850 -11.94329 -11.91276 -11.59746 -11.21692 -11.03243 -10.72886 -9.44537 -9.33188 -9.06751 -8.32736 -6.36540 1.25088 1.33899 1.45270 2.27649 2.79552 2.99044 3.28534 3.41866 3.93763 3.97990 4.22302 4.29222 4.31584 4.36406 4.45839 4.48366 4.52754 4.59427 4.67242 4.70019 4.75394 4.78271 4.87732 4.92344 4.99952 5.01845 5.02165 5.11460 5.21804 5.30158 5.39088 5.50639 5.96780 5.97656 6.02970 6.14576 6.30214 6.56808 6.66191 6.70795 7.28428 8.82901 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.009571 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.737006 B = 2924.776303 C = 4357.434061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.039 0.961 4 C 0.058 3.942 5 N -0.538 5.538 6 C 0.073 3.927 7 C 0.074 3.926 8 N -0.560 5.560 9 C 0.025 3.975 10 C 0.027 3.973 11 C 0.200 3.800 12 H -0.015 1.015 13 C -0.509 4.509 14 H 0.045 0.955 15 C 0.020 3.980 16 N -0.940 5.940 17 Si 0.942 3.058 18 H -0.263 1.263 19 H -0.294 1.294 20 H -0.256 1.256 21 C 0.067 3.933 22 N -0.694 5.694 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.267 0.733 39 H 0.052 0.948 40 H 0.027 0.973 41 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 4.479 7.433 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.057 0.943 4 C -0.070 4.070 5 N -0.263 5.263 6 C -0.056 4.056 7 C -0.054 4.054 8 N -0.285 5.285 9 C -0.124 4.124 10 C -0.121 4.121 11 C 0.091 3.909 12 H 0.002 0.998 13 C -0.548 4.548 14 H 0.064 0.936 15 C -0.178 4.178 16 N -0.580 5.580 17 Si 0.769 3.231 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.181 1.181 21 C -0.063 4.063 22 N -0.327 5.327 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.096 3.811 7.636 15.631 hybrid contribution 0.773 0.381 -1.142 1.431 sum -12.323 4.193 6.494 14.546 Atomic orbital electron populations 1.21709 0.91461 1.02613 1.03108 1.21613 0.96548 0.95001 0.89457 0.94332 1.22334 0.87331 0.98846 0.98465 1.61964 1.07907 1.54268 1.02112 1.21848 1.00214 0.94739 0.88761 1.21954 1.00178 0.94889 0.88363 1.61933 1.09147 1.54460 1.02967 1.22395 0.87302 0.99943 1.02721 1.22432 1.01487 0.96251 0.91888 1.19411 0.93270 0.90661 0.87518 0.99792 1.21147 0.90213 1.35659 1.07759 0.93638 1.25689 0.95452 0.96199 1.00502 1.70008 1.07810 1.46130 1.34052 0.85959 0.78928 0.78281 0.79947 1.18862 1.22167 1.18056 1.22208 0.87252 0.98704 0.98125 1.60622 1.07845 1.58528 1.05711 0.92356 0.90224 0.91304 0.88786 0.95861 0.96396 0.92226 0.95223 0.89644 0.95821 0.89593 0.93226 0.90374 0.90053 0.95508 0.92362 0.93013 0.95521 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.46 71.98 0.68 -2.13 16 2 C 0.08 2.55 3.19 44.92 0.14 2.69 16 3 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.06 1.98 4.69 86.31 0.41 2.38 16 5 N -0.54 -22.86 4.52 -874.89 -3.95 -26.81 16 6 C 0.07 2.98 4.67 86.30 0.40 3.38 16 7 C 0.07 2.40 4.89 86.30 0.42 2.82 16 8 N -0.56 -16.46 5.02 -948.82 -4.76 -21.22 16 9 C 0.02 0.74 9.32 127.69 1.19 1.93 16 10 C 0.03 0.58 9.57 127.69 1.22 1.80 16 11 C 0.20 9.86 1.54 44.17 0.07 9.93 16 12 H -0.02 -0.82 7.20 -2.39 -0.02 -0.84 16 13 C -0.51 -29.50 8.38 25.60 0.21 -29.28 16 14 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 15 C 0.02 1.17 5.45 84.65 0.46 1.63 16 16 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 17 Si 0.94 45.89 24.36 68.60 1.67 47.56 16 18 H -0.26 -12.02 6.88 99.48 0.68 -11.33 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 20 H -0.26 -12.25 6.53 99.48 0.65 -11.61 16 21 C 0.07 2.94 5.46 86.31 0.47 3.41 16 22 N -0.69 -24.47 6.55 -491.13 -3.21 -27.69 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 2.65 6.34 -2.39 -0.02 2.63 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 29 H 0.06 2.87 4.40 -2.39 -0.01 2.86 16 30 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.09 2.40 6.41 -2.39 -0.02 2.39 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 2.11 8.12 -2.38 -0.02 2.09 16 34 H 0.05 1.77 6.47 -2.39 -0.02 1.75 16 35 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 39 H 0.05 2.37 3.31 -2.39 -0.01 2.36 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.35 10.18 8.83 -89.69 -0.79 9.39 16 Total: -1.00 -66.83 305.33 -4.15 -70.98 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.13 Total: 16.94 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.68 Total: -1.43 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -11.63 Total: -134.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal Total: -66.83 -4.15 -70.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.705 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds