Wall clock time and date at job start Mon Mar 30 2020 04:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.53006 * 109.47055 * 170.00064 * 4 2 1 6 6 N 1.46898 * 109.47055 * 180.02562 * 5 4 2 7 7 C 1.46959 * 111.00111 * 66.04579 * 6 5 4 8 8 C 1.53055 * 109.36135 * 176.80896 * 7 6 5 9 9 N 1.46955 * 109.36538 * 58.40372 * 8 7 6 10 10 C 1.46898 * 111.00079 * 176.80639 * 9 8 7 11 11 C 1.46956 * 110.88083 * 300.67919 * 9 8 7 12 12 C 1.46955 * 111.00079 * 302.24604 * 6 5 4 13 13 H 1.09001 * 109.49016 * 63.22322 * 12 6 5 14 14 C 1.50704 * 109.49050 * 303.15623 * 12 6 5 15 15 H 1.07998 * 119.99975 * 0.02562 * 14 12 6 16 16 C 1.37875 * 120.00391 * 179.97438 * 14 12 6 17 17 N 1.31516 * 119.99507 * 0.02562 * 16 14 12 18 18 Si 1.86790 * 120.00415 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47305 * 89.99994 * 18 16 14 20 20 H 1.48500 * 109.47451 * 209.99966 * 18 16 14 21 21 H 1.48509 * 109.47095 * 330.00133 * 18 16 14 22 22 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 23 23 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 24 24 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 25 25 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 26 26 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 28 28 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 29 29 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 30 30 H 1.09000 * 109.47135 * 300.00288 * 5 4 2 31 31 H 1.09004 * 109.46792 * 59.99896 * 5 4 2 32 32 H 1.08997 * 109.48799 * 296.77535 * 7 6 5 33 33 H 1.09003 * 109.48558 * 56.84258 * 7 6 5 34 34 H 1.08997 * 109.48089 * 178.36815 * 8 7 6 35 35 H 1.09001 * 109.49047 * 298.43352 * 8 7 6 36 36 H 1.08998 * 109.46556 * 56.04696 * 10 9 8 37 37 H 1.08997 * 109.47016 * 176.04726 * 10 9 8 38 38 H 1.08994 * 109.47090 * 296.04818 * 10 9 8 39 39 H 1.08998 * 109.49079 * 179.28557 * 11 9 8 40 40 H 1.09007 * 109.48452 * 299.35345 * 11 9 8 41 41 H 0.97004 * 120.00061 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 7 4.0308 -1.7217 2.1077 7 6 3.5041 -3.0937 2.1072 8 6 4.1362 -3.8803 3.2580 9 7 3.8400 -3.2060 4.5297 10 6 4.3663 -3.9725 5.6670 11 6 4.3666 -1.8341 4.5302 12 6 3.7346 -1.0474 3.3794 13 1 2.6551 -0.9984 3.5222 14 6 4.3027 0.3482 3.3528 15 1 4.8307 0.6997 2.4788 16 6 4.1475 1.1766 4.4440 17 7 3.5041 0.7487 5.5082 18 14 4.8510 2.9067 4.4108 19 1 3.8351 3.8438 3.8676 20 1 5.2173 3.3187 5.7896 21 1 6.0599 2.9330 3.5486 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0708 24 1 -0.3633 0.4513 0.9233 25 1 1.6459 1.8948 0.8900 26 1 3.0850 1.3424 -0.0005 27 1 1.6459 1.8948 -0.8900 28 1 1.7975 -0.2247 2.0628 29 1 1.5090 -1.7406 1.1758 30 1 3.7025 -1.4965 0.0452 31 1 3.9910 0.0195 0.9323 32 1 2.4220 -3.0678 2.2355 33 1 3.7470 -3.5760 1.1603 34 1 3.7252 -4.8897 3.2772 35 1 5.2157 -3.9294 3.1152 36 1 5.4359 -4.1334 5.5327 37 1 4.1953 -3.4175 6.5894 38 1 3.8581 -4.9351 5.7226 39 1 4.1237 -1.3517 5.4770 40 1 5.4487 -1.8600 4.4019 41 1 3.3952 1.3313 6.2761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220493159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:49 Heat of formation + Delta-G solvation = 26.029900 kcal Electronic energy + Delta-G solvation = -18989.134360 eV Core-core repulsion = 16325.449027 eV Total energy + Delta-G solvation = -2663.685333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.74633 -36.87045 -34.53808 -32.94307 -29.76666 -29.12746 -27.21669 -26.42166 -25.27125 -23.66177 -22.20204 -21.54616 -20.50123 -18.28880 -16.33235 -15.62167 -15.12845 -14.83941 -14.51577 -14.21037 -14.09567 -13.88926 -13.61433 -13.03664 -12.66943 -12.44646 -12.15257 -11.95382 -11.60605 -11.41292 -11.36602 -11.09708 -11.02790 -10.85225 -10.73173 -10.62354 -10.35951 -10.13493 -9.77465 -9.53572 -8.93051 -8.49754 -7.97252 -7.50466 -7.07664 -6.06683 -4.11321 3.26040 3.33734 3.37427 4.34748 4.40342 4.81746 5.08691 5.28011 5.45463 5.55403 5.71811 5.72190 5.78505 5.85104 5.93896 5.99558 6.02205 6.05992 6.06854 6.17360 6.28037 6.33360 6.36353 6.36554 6.53675 6.61749 6.81363 6.86767 6.98883 7.33386 7.40942 7.46223 7.57804 7.75138 7.91290 7.99120 8.15568 8.30625 8.60126 8.96667 9.53984 10.99875 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.012179 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.620368 B = 2298.394947 C = 3851.791902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.024 3.976 4 C 0.020 3.980 5 C 0.075 3.925 6 N -0.535 5.535 7 C 0.056 3.944 8 C 0.061 3.939 9 N -0.550 5.550 10 C 0.031 3.969 11 C 0.065 3.935 12 C 0.221 3.779 13 H 0.013 0.987 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.107 0.893 40 H 0.015 0.985 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -4.311 -5.865 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.054 4.054 6 N -0.259 5.259 7 C -0.073 4.073 8 C -0.068 4.068 9 N -0.275 5.275 10 C -0.118 4.118 11 C -0.062 4.062 12 C 0.114 3.886 13 H 0.030 0.970 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.033 0.967 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.191 -4.483 -6.088 7.871 hybrid contribution 0.025 1.302 0.933 1.602 sum -2.166 -3.181 -5.155 6.433 Atomic orbital electron populations 1.22334 0.88491 1.01508 0.99982 1.62071 1.06987 1.14010 1.43901 1.22392 1.01448 0.88775 0.99842 1.22869 0.98492 0.97370 0.92182 1.21966 0.90978 0.99411 0.93031 1.62518 1.57394 1.00874 1.05106 1.22062 0.97057 0.91356 0.96806 1.22054 0.98060 0.96417 0.90238 1.62315 1.59538 1.04312 1.01354 1.22240 0.96592 0.97879 0.95070 1.22514 0.95465 0.84466 1.03729 1.19281 0.94944 0.91531 0.82806 0.96988 1.21112 1.35542 0.96429 1.01222 0.91820 1.24943 0.95170 0.98454 0.95477 1.69883 1.41697 1.36233 1.05042 0.86572 0.79490 0.84536 0.77321 1.20770 1.21235 1.19767 0.92030 0.91956 0.95868 0.95377 0.90734 0.92407 0.92726 0.92114 0.92480 0.89988 0.95064 0.91965 0.92098 0.95107 0.96693 0.91778 0.92787 0.87536 0.96689 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.57 60.07 0.57 0.94 16 2 N -0.55 -9.16 5.02 -251.25 -1.26 -10.42 16 3 C 0.02 0.38 9.40 60.06 0.56 0.95 16 4 C 0.02 0.38 4.25 -3.82 -0.02 0.37 16 5 C 0.07 1.48 4.91 -3.82 -0.02 1.46 16 6 N -0.53 -11.58 4.73 -227.87 -1.08 -12.65 16 7 C 0.06 1.06 5.27 -3.76 -0.02 1.04 16 8 C 0.06 1.13 5.62 -3.77 -0.02 1.11 16 9 N -0.55 -11.52 4.97 -242.76 -1.21 -12.73 16 10 C 0.03 0.54 9.63 60.06 0.58 1.12 16 11 C 0.07 1.59 4.65 -3.77 -0.02 1.58 16 12 C 0.22 5.47 1.39 -68.81 -0.10 5.38 16 13 H 0.01 0.35 6.45 -51.93 -0.33 0.01 16 14 C -0.50 -13.34 7.94 -34.44 -0.27 -13.61 16 15 H 0.06 1.69 6.45 -52.49 -0.34 1.35 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.72 11.35 55.43 0.63 -24.09 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.84 8.12 -51.93 -0.42 0.41 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.24 6.30 -51.93 -0.33 0.91 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.24 6.41 -51.93 -0.33 0.90 16 29 H 0.06 1.13 6.54 -51.93 -0.34 0.79 16 30 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.08 1.73 4.70 -51.93 -0.24 1.49 16 32 H 0.03 0.61 6.63 -51.93 -0.34 0.27 16 33 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.11 2.86 6.08 -51.93 -0.32 2.55 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -27.70 308.39 -9.33 -37.03 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.20 Total: 0.50 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 1.16 Total: 1.88 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -2.91 Total: -59.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.70 -9.33 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.057 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds