Wall clock time and date at job start Mon Mar 30 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.53006 * 109.47055 * 170.00064 * 4 2 1 6 6 N 1.46898 * 109.47055 * 180.02562 * 5 4 2 7 7 C 1.46959 * 111.00111 * 66.04579 * 6 5 4 8 8 C 1.53055 * 109.36135 * 176.80896 * 7 6 5 9 9 N 1.46955 * 109.36538 * 58.40372 * 8 7 6 10 10 C 1.46898 * 111.00079 * 176.80639 * 9 8 7 11 11 C 1.46956 * 110.88083 * 300.67919 * 9 8 7 12 12 C 1.46955 * 111.00079 * 302.24604 * 6 5 4 13 13 H 1.09001 * 109.49016 * 63.22322 * 12 6 5 14 14 C 1.50704 * 109.49050 * 303.15623 * 12 6 5 15 15 H 1.07998 * 119.99975 * 0.02562 * 14 12 6 16 16 C 1.37875 * 120.00391 * 179.97438 * 14 12 6 17 17 N 1.31516 * 119.99507 * 0.02562 * 16 14 12 18 18 Si 1.86790 * 120.00415 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47305 * 89.99994 * 18 16 14 20 20 H 1.48500 * 109.47451 * 209.99966 * 18 16 14 21 21 H 1.48509 * 109.47095 * 330.00133 * 18 16 14 22 22 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 23 23 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 24 24 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 25 25 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 26 26 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 28 28 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 29 29 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 30 30 H 1.09000 * 109.47135 * 300.00288 * 5 4 2 31 31 H 1.09004 * 109.46792 * 59.99896 * 5 4 2 32 32 H 1.08997 * 109.48799 * 296.77535 * 7 6 5 33 33 H 1.09003 * 109.48558 * 56.84258 * 7 6 5 34 34 H 1.08997 * 109.48089 * 178.36815 * 8 7 6 35 35 H 1.09001 * 109.49047 * 298.43352 * 8 7 6 36 36 H 1.08998 * 109.46556 * 56.04696 * 10 9 8 37 37 H 1.08997 * 109.47016 * 176.04726 * 10 9 8 38 38 H 1.08994 * 109.47090 * 296.04818 * 10 9 8 39 39 H 1.08998 * 109.49079 * 179.28557 * 11 9 8 40 40 H 1.09007 * 109.48452 * 299.35345 * 11 9 8 41 41 H 0.97004 * 120.00061 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 7 4.0308 -1.7217 2.1077 7 6 3.5041 -3.0937 2.1072 8 6 4.1362 -3.8803 3.2580 9 7 3.8400 -3.2060 4.5297 10 6 4.3663 -3.9725 5.6670 11 6 4.3666 -1.8341 4.5302 12 6 3.7346 -1.0474 3.3794 13 1 2.6551 -0.9984 3.5222 14 6 4.3027 0.3482 3.3528 15 1 4.8307 0.6997 2.4788 16 6 4.1475 1.1766 4.4440 17 7 3.5041 0.7487 5.5082 18 14 4.8510 2.9067 4.4108 19 1 3.8351 3.8438 3.8676 20 1 5.2173 3.3187 5.7896 21 1 6.0599 2.9330 3.5486 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0708 24 1 -0.3633 0.4513 0.9233 25 1 1.6459 1.8948 0.8900 26 1 3.0850 1.3424 -0.0005 27 1 1.6459 1.8948 -0.8900 28 1 1.7975 -0.2247 2.0628 29 1 1.5090 -1.7406 1.1758 30 1 3.7025 -1.4965 0.0452 31 1 3.9910 0.0195 0.9323 32 1 2.4220 -3.0678 2.2355 33 1 3.7470 -3.5760 1.1603 34 1 3.7252 -4.8897 3.2772 35 1 5.2157 -3.9294 3.1152 36 1 5.4359 -4.1334 5.5327 37 1 4.1953 -3.4175 6.5894 38 1 3.8581 -4.9351 5.7226 39 1 4.1237 -1.3517 5.4770 40 1 5.4487 -1.8600 4.4019 41 1 3.3952 1.3313 6.2761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220493159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:45 Heat of formation + Delta-G solvation = 4.504912 kcal Electronic energy + Delta-G solvation = -18990.067754 eV Core-core repulsion = 16325.449027 eV Total energy + Delta-G solvation = -2664.618727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.41448 -38.32103 -36.13831 -34.92224 -31.48078 -30.77817 -28.49077 -27.95517 -27.22945 -25.15687 -23.90360 -23.15891 -22.07397 -20.01818 -18.32649 -17.26164 -16.74595 -16.45226 -16.05761 -15.71890 -15.60306 -15.59275 -15.30120 -14.61200 -14.31325 -14.04733 -13.86638 -13.27989 -13.02892 -12.89579 -12.88753 -12.76141 -12.59665 -12.50495 -12.30198 -12.27625 -12.11166 -12.03723 -11.49390 -11.27238 -10.85827 -10.53157 -9.40322 -9.15737 -8.82119 -8.12646 -6.23783 1.38420 1.40581 1.50403 2.39775 3.00197 3.10059 3.31663 3.49752 4.03783 4.19703 4.29654 4.30539 4.37324 4.45695 4.51045 4.54913 4.62317 4.67151 4.71277 4.77855 4.79414 4.87249 4.94193 4.94870 4.97707 5.04704 5.11528 5.14836 5.27395 5.47961 5.62823 5.70196 5.97134 6.11433 6.12880 6.26470 6.32551 6.51766 6.76769 6.91632 7.45185 8.93064 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.012179 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.620368 B = 2298.394947 C = 3851.791902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.080 3.920 6 N -0.545 5.545 7 C 0.055 3.945 8 C 0.061 3.939 9 N -0.565 5.565 10 C 0.032 3.968 11 C 0.080 3.920 12 C 0.233 3.767 13 H -0.026 1.026 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.268 1.268 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.007 0.993 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.009 0.991 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.076 0.924 40 H -0.004 1.004 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -5.189 -7.427 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.092 4.092 5 C -0.049 4.049 6 N -0.269 5.269 7 C -0.074 4.074 8 C -0.067 4.067 9 N -0.290 5.290 10 C -0.116 4.116 11 C -0.048 4.048 12 C 0.126 3.874 13 H -0.008 1.008 14 C -0.553 4.553 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.777 3.223 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.192 1.192 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.025 0.975 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.014 0.986 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.217 -5.376 -7.668 9.623 hybrid contribution -0.007 1.518 1.377 2.049 sum -2.224 -3.858 -6.291 7.708 Atomic orbital electron populations 1.22442 0.86756 1.02712 1.00493 1.62124 1.08570 1.14060 1.42050 1.22418 1.00993 0.88557 1.00329 1.22583 0.98277 0.97279 0.91076 1.21920 0.91111 0.98696 0.93143 1.62471 1.58046 1.02246 1.04102 1.22199 0.96579 0.89901 0.98676 1.22172 0.98153 0.97659 0.88698 1.62262 1.59853 1.03282 1.03628 1.22299 0.97358 0.98571 0.93390 1.22115 0.94039 0.86722 1.01937 1.18949 0.92320 0.91445 0.84697 1.00819 1.21338 1.35280 0.97717 1.00975 0.92414 1.25652 0.95517 1.01928 0.95183 1.70020 1.42740 1.37346 1.05508 0.85648 0.78935 0.80349 0.77326 1.20294 1.20963 1.19205 0.89352 0.90807 0.97141 0.97463 0.91610 0.89249 0.97225 0.91626 0.90203 0.91804 0.95785 0.88845 0.88564 0.95298 0.95964 0.92729 0.89633 0.90616 0.98582 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.57 127.69 1.22 1.88 16 2 N -0.54 -17.67 5.02 -948.83 -4.76 -22.43 16 3 C 0.03 0.80 9.40 127.69 1.20 2.00 16 4 C 0.04 1.44 4.25 86.31 0.37 1.80 16 5 C 0.08 3.12 4.91 86.31 0.42 3.55 16 6 N -0.54 -23.51 4.73 -874.85 -4.13 -27.65 16 7 C 0.05 1.98 5.27 86.31 0.45 2.43 16 8 C 0.06 2.14 5.62 86.31 0.48 2.62 16 9 N -0.57 -23.38 4.97 -921.95 -4.58 -27.96 16 10 C 0.03 1.08 9.63 127.69 1.23 2.31 16 11 C 0.08 4.01 4.65 86.31 0.40 4.41 16 12 C 0.23 11.92 1.39 44.18 0.06 11.98 16 13 H -0.03 -1.49 6.45 -2.39 -0.02 -1.51 16 14 C -0.51 -28.07 7.94 25.60 0.20 -27.87 16 15 H 0.06 3.15 6.45 -2.91 -0.02 3.13 16 16 C 0.02 0.90 5.30 84.65 0.45 1.35 16 17 N -0.92 -52.74 11.35 21.45 0.24 -52.50 16 18 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 1.83 8.12 -2.38 -0.02 1.81 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.07 2.18 6.30 -2.39 -0.02 2.16 16 27 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.01 0.45 6.41 -2.39 -0.02 0.44 16 29 H 0.07 2.42 6.54 -2.39 -0.02 2.40 16 30 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 31 H 0.06 2.72 4.70 -2.38 -0.01 2.71 16 32 H 0.02 0.91 6.63 -2.39 -0.02 0.89 16 33 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 34 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 4.25 6.08 -2.39 -0.01 4.23 16 40 H 0.00 -0.22 8.14 -2.38 -0.02 -0.23 16 41 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -61.38 308.39 -3.73 -65.11 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.98 Total: 13.35 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.50 Total: 6.47 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -13.23 Total: -130.53 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -61.38 -3.73 -65.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -61.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds