Wall clock time and date at job start Mon Mar 30 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00053 * 2 1 4 4 C 1.46905 * 110.99801 * 123.95832 * 2 1 3 5 5 C 1.53001 * 109.46881 * 169.99975 * 4 2 1 6 6 N 1.46905 * 109.46881 * 179.97438 * 5 4 2 7 7 C 1.44250 * 110.99938 * 66.04558 * 6 5 4 8 8 C 1.54248 * 108.63773 * 219.84506 * 7 6 5 9 9 C 1.46140 * 111.90927 * 281.38033 * 8 7 6 10 10 N 1.48109 * 112.18776 * 60.86844 * 9 8 7 11 11 C 1.44262 * 109.97874 * 279.72593 * 10 9 8 12 12 H 1.09006 * 108.86698 * 333.10605 * 11 10 9 13 13 C 1.50700 * 108.86640 * 214.69606 * 11 10 9 14 14 H 1.08001 * 119.99806 * 240.00083 * 13 11 10 15 15 C 1.37872 * 120.00053 * 59.99526 * 13 11 10 16 16 N 1.31519 * 120.00221 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00112 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47353 * 59.99783 * 17 15 13 19 19 H 1.48504 * 109.47347 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46836 * 299.99886 * 17 15 13 21 21 C 1.48198 * 110.99408 * 194.28455 * 6 5 4 22 22 H 1.09001 * 109.47108 * 296.04252 * 1 2 3 23 23 H 1.09008 * 109.47254 * 56.04314 * 1 2 3 24 24 H 1.09003 * 109.47420 * 176.04483 * 1 2 3 25 25 H 1.09008 * 109.47138 * 183.94942 * 3 2 1 26 26 H 1.08994 * 109.47425 * 303.95544 * 3 2 1 27 27 H 1.08998 * 109.47105 * 63.95833 * 3 2 1 28 28 H 1.09002 * 109.47207 * 49.99967 * 4 2 1 29 29 H 1.08999 * 109.46982 * 289.99517 * 4 2 1 30 30 H 1.09002 * 109.47207 * 59.99992 * 5 4 2 31 31 H 1.08998 * 109.47403 * 299.99827 * 5 4 2 32 32 H 1.08998 * 109.60494 * 100.10429 * 7 6 5 33 33 H 1.09000 * 109.75082 * 339.67675 * 7 6 5 34 34 H 1.09001 * 108.99370 * 160.75544 * 8 7 6 35 35 H 1.09001 * 108.99751 * 42.00920 * 8 7 6 36 36 H 1.08999 * 108.93922 * 300.16753 * 9 8 7 37 37 H 1.09002 * 108.86742 * 181.51491 * 9 8 7 38 38 H 1.00901 * 111.00154 * 42.95247 * 10 9 8 39 39 H 0.97001 * 119.99731 * 180.02562 * 16 15 13 40 40 H 1.08998 * 108.82438 * 312.52903 * 21 6 5 41 41 H 1.08993 * 108.82568 * 70.83661 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9555 0.9703 6 7 4.0309 -1.7210 2.1082 7 6 3.5140 -3.0677 2.1087 8 6 3.1973 -3.4737 3.5627 9 6 4.4024 -3.8511 4.2983 10 7 5.3761 -2.7384 4.3853 11 6 6.1251 -2.6417 3.1561 12 1 6.1580 -3.6242 2.6852 13 6 7.5332 -2.2105 3.4762 14 1 7.9241 -1.2927 3.0624 15 6 8.3222 -2.9876 4.2975 16 7 7.8463 -4.1054 4.8012 17 14 10.0674 -2.4527 4.6948 18 1 10.0383 -1.1310 5.3712 19 1 10.7002 -3.4539 5.5907 20 1 10.8514 -2.3484 3.4379 21 6 5.5093 -1.6359 2.1669 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5741 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8722 0.9233 28 1 1.5089 -1.7408 1.1755 29 1 1.7975 -0.2249 2.0628 30 1 3.9909 0.0192 0.9323 31 1 3.7024 -1.4966 0.0451 32 1 4.2596 -3.7459 1.6937 33 1 2.6044 -3.1134 1.5098 34 1 2.5084 -4.3183 3.5532 35 1 2.7205 -2.6347 4.0695 36 1 4.8739 -4.6954 3.7954 37 1 4.1197 -4.1534 5.3067 38 1 4.9120 -1.8674 4.5953 39 1 8.4014 -4.6518 5.3793 40 1 5.9124 -1.8287 1.1727 41 1 5.7918 -0.6276 2.4691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220493236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:25 Heat of formation + Delta-G solvation = 23.267700 kcal Electronic energy + Delta-G solvation = -18423.655944 eV Core-core repulsion = 15759.850832 eV Total energy + Delta-G solvation = -2663.805111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.85710 -37.31250 -34.43324 -32.89969 -30.91476 -29.34210 -27.68846 -26.44400 -24.99790 -24.31793 -22.47789 -20.61009 -20.22194 -19.03196 -16.71578 -15.81344 -15.60345 -15.26057 -14.62348 -14.42634 -14.17490 -13.92360 -13.64280 -13.26580 -12.70065 -12.50694 -12.23653 -12.11810 -12.01178 -11.81881 -11.62309 -11.31252 -10.95119 -10.81527 -10.71238 -10.46061 -10.33629 -10.14744 -9.94684 -9.44184 -8.88274 -8.45578 -8.28369 -7.65642 -6.67217 -5.76970 -3.89194 3.41324 3.45736 3.48124 3.76345 4.49668 4.62801 4.95599 5.05681 5.24015 5.29425 5.41430 5.44641 5.48290 5.53426 5.65500 5.69213 5.71092 5.80264 5.87232 5.96003 6.06648 6.14410 6.25559 6.28067 6.39138 6.60652 6.71600 6.79527 6.87931 6.91992 6.93801 7.07026 7.44288 7.60216 7.78860 8.02192 8.42073 8.82689 8.95761 9.35054 9.78124 11.28087 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.005575 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.526630 B = 5021.145533 C = 5617.531433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.022 3.978 4 C 0.058 3.942 5 C 0.067 3.933 6 N -0.557 5.557 7 C 0.064 3.936 8 C -0.141 4.141 9 C 0.059 3.941 10 N -0.625 5.625 11 C 0.221 3.779 12 H 0.026 0.974 13 C -0.525 4.525 14 H 0.049 0.951 15 C 0.085 3.915 16 N -0.855 5.855 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.281 1.281 21 C 0.041 3.959 22 H 0.024 0.976 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.315 0.685 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 5.555 -7.146 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.062 4.062 6 N -0.282 5.282 7 C -0.065 4.065 8 C -0.181 4.181 9 C -0.071 4.071 10 N -0.252 5.252 11 C 0.111 3.889 12 H 0.044 0.956 13 C -0.565 4.565 14 H 0.068 0.932 15 C -0.120 4.120 16 N -0.491 5.491 17 Si 0.712 3.288 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.087 4.087 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.440 4.962 -6.711 14.980 hybrid contribution 0.264 0.692 -0.357 0.822 sum -12.176 5.654 -7.068 15.171 Atomic orbital electron populations 1.22351 0.87465 1.02108 1.00270 1.61931 1.07679 1.14037 1.43825 1.22432 1.01281 0.88728 1.00206 1.22187 0.95749 0.98025 0.91007 1.21926 0.93681 0.98466 0.92100 1.60534 1.11530 1.13837 1.42304 1.21810 0.98286 0.89463 0.96940 1.21397 1.00176 1.00262 0.96241 1.20848 0.91174 0.96974 0.98106 1.61261 1.23066 1.05135 1.35750 1.18967 0.92076 0.92840 0.85015 0.95620 1.20923 0.96105 1.08092 1.31338 0.93238 1.24853 0.97171 0.94755 0.95240 1.70040 1.35359 1.12609 1.31061 0.86848 0.85554 0.78376 0.78067 1.20401 1.21512 1.20639 1.23441 0.82748 1.02731 0.99795 0.95730 0.91558 0.91489 0.90970 0.91713 0.95570 0.90843 0.93999 0.91326 0.94744 0.94178 0.92412 0.93230 0.92163 0.92363 0.93366 0.86881 0.93619 0.96137 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -6.54 5.02 -251.26 -1.26 -7.81 16 3 C 0.02 0.23 9.32 60.06 0.56 0.79 16 4 C 0.06 0.77 4.92 -3.82 -0.02 0.75 16 5 C 0.07 1.01 4.77 -3.82 -0.02 0.99 16 6 N -0.56 -9.82 4.02 -234.27 -0.94 -10.76 16 7 C 0.06 1.09 5.11 -4.59 -0.02 1.06 16 8 C -0.14 -2.40 5.50 -29.33 -0.16 -2.56 16 9 C 0.06 1.23 5.95 -6.41 -0.04 1.19 16 10 N -0.63 -14.88 5.68 -111.90 -0.64 -15.52 16 11 C 0.22 5.45 1.78 -69.79 -0.12 5.33 16 12 H 0.03 0.71 6.55 -51.93 -0.34 0.37 16 13 C -0.53 -14.52 8.63 -34.44 -0.30 -14.81 16 14 H 0.05 1.35 7.67 -52.49 -0.40 0.95 16 15 C 0.09 2.40 5.38 -17.82 -0.10 2.31 16 16 N -0.86 -24.93 12.75 55.43 0.71 -24.23 16 17 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.04 0.86 4.75 -2.62 -0.01 0.85 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 0.55 8.12 -51.92 -0.42 0.13 16 24 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 25 H 0.07 0.79 6.47 -51.92 -0.34 0.46 16 26 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.96 6.29 -51.93 -0.33 0.64 16 29 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 1.03 6.44 -51.93 -0.33 0.70 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.04 0.77 6.96 -51.93 -0.36 0.40 16 33 H 0.06 0.87 5.85 -51.93 -0.30 0.56 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.31 7.22 8.18 -39.29 -0.32 6.89 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 41 H 0.06 1.38 7.91 -51.93 -0.41 0.96 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -28.71 311.33 -9.41 -38.12 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.29 Total: 2.24 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.35 Total: -3.28 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -2.13 Total: -58.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.71 -9.41 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.385 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds