Wall clock time and date at job start Mon Mar 30 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00053 * 2 1 4 4 C 1.46905 * 110.99801 * 123.95832 * 2 1 3 5 5 C 1.53001 * 109.46881 * 169.99975 * 4 2 1 6 6 N 1.46905 * 109.46881 * 179.97438 * 5 4 2 7 7 C 1.44250 * 110.99938 * 66.04558 * 6 5 4 8 8 C 1.54248 * 108.63773 * 219.84506 * 7 6 5 9 9 C 1.46140 * 111.90927 * 281.38033 * 8 7 6 10 10 N 1.48109 * 112.18776 * 60.86844 * 9 8 7 11 11 C 1.44262 * 109.97874 * 279.72593 * 10 9 8 12 12 H 1.09006 * 108.86698 * 333.10605 * 11 10 9 13 13 C 1.50700 * 108.86640 * 214.69606 * 11 10 9 14 14 H 1.08001 * 119.99806 * 240.00083 * 13 11 10 15 15 C 1.37872 * 120.00053 * 59.99526 * 13 11 10 16 16 N 1.31519 * 120.00221 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00112 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47353 * 59.99783 * 17 15 13 19 19 H 1.48504 * 109.47347 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46836 * 299.99886 * 17 15 13 21 21 C 1.48198 * 110.99408 * 194.28455 * 6 5 4 22 22 H 1.09001 * 109.47108 * 296.04252 * 1 2 3 23 23 H 1.09008 * 109.47254 * 56.04314 * 1 2 3 24 24 H 1.09003 * 109.47420 * 176.04483 * 1 2 3 25 25 H 1.09008 * 109.47138 * 183.94942 * 3 2 1 26 26 H 1.08994 * 109.47425 * 303.95544 * 3 2 1 27 27 H 1.08998 * 109.47105 * 63.95833 * 3 2 1 28 28 H 1.09002 * 109.47207 * 49.99967 * 4 2 1 29 29 H 1.08999 * 109.46982 * 289.99517 * 4 2 1 30 30 H 1.09002 * 109.47207 * 59.99992 * 5 4 2 31 31 H 1.08998 * 109.47403 * 299.99827 * 5 4 2 32 32 H 1.08998 * 109.60494 * 100.10429 * 7 6 5 33 33 H 1.09000 * 109.75082 * 339.67675 * 7 6 5 34 34 H 1.09001 * 108.99370 * 160.75544 * 8 7 6 35 35 H 1.09001 * 108.99751 * 42.00920 * 8 7 6 36 36 H 1.08999 * 108.93922 * 300.16753 * 9 8 7 37 37 H 1.09002 * 108.86742 * 181.51491 * 9 8 7 38 38 H 1.00901 * 111.00154 * 42.95247 * 10 9 8 39 39 H 0.97001 * 119.99731 * 180.02562 * 16 15 13 40 40 H 1.08998 * 108.82438 * 312.52903 * 21 6 5 41 41 H 1.08993 * 108.82568 * 70.83661 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9555 0.9703 6 7 4.0309 -1.7210 2.1082 7 6 3.5140 -3.0677 2.1087 8 6 3.1973 -3.4737 3.5627 9 6 4.4024 -3.8511 4.2983 10 7 5.3761 -2.7384 4.3853 11 6 6.1251 -2.6417 3.1561 12 1 6.1580 -3.6242 2.6852 13 6 7.5332 -2.2105 3.4762 14 1 7.9241 -1.2927 3.0624 15 6 8.3222 -2.9876 4.2975 16 7 7.8463 -4.1054 4.8012 17 14 10.0674 -2.4527 4.6948 18 1 10.0383 -1.1310 5.3712 19 1 10.7002 -3.4539 5.5907 20 1 10.8514 -2.3484 3.4379 21 6 5.5093 -1.6359 2.1669 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5741 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8722 0.9233 28 1 1.5089 -1.7408 1.1755 29 1 1.7975 -0.2249 2.0628 30 1 3.9909 0.0192 0.9323 31 1 3.7024 -1.4966 0.0451 32 1 4.2596 -3.7459 1.6937 33 1 2.6044 -3.1134 1.5098 34 1 2.5084 -4.3183 3.5532 35 1 2.7205 -2.6347 4.0695 36 1 4.8739 -4.6954 3.7954 37 1 4.1197 -4.1534 5.3067 38 1 4.9120 -1.8674 4.5953 39 1 8.4014 -4.6518 5.3793 40 1 5.9124 -1.8287 1.1727 41 1 5.7918 -0.6276 2.4691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220493236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:25 Heat of formation + Delta-G solvation = 1.689755 kcal Electronic energy + Delta-G solvation = -18424.591634 eV Core-core repulsion = 15759.850832 eV Total energy + Delta-G solvation = -2664.740801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33718 -38.41934 -35.98815 -34.76179 -32.81347 -30.58365 -28.49259 -28.19667 -26.62087 -25.87146 -23.82333 -21.97744 -21.70174 -20.67622 -18.65396 -17.11942 -16.90309 -16.49307 -16.26296 -15.79156 -15.63410 -15.45226 -15.03494 -14.66638 -14.20933 -14.11919 -13.62718 -13.43054 -13.23861 -12.85919 -12.81380 -12.71771 -12.63902 -12.53734 -12.32057 -12.08916 -11.91423 -11.65018 -11.61227 -11.22770 -10.87476 -10.43944 -9.34805 -9.13104 -8.53453 -7.89333 -6.10406 1.46064 1.47765 1.54267 2.49078 2.69847 3.28817 3.36740 3.86393 4.02541 4.10000 4.17880 4.25605 4.34546 4.42057 4.48045 4.50736 4.55640 4.61414 4.66422 4.73470 4.77986 4.93503 4.94030 5.00308 5.01627 5.04290 5.11583 5.16341 5.27455 5.35987 5.53736 5.83555 5.97325 6.06412 6.10185 6.32382 6.44032 6.77445 7.09481 7.38595 7.61691 9.12511 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.005575 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.526630 B = 5021.145533 C = 5617.531433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.562 5.562 3 C 0.021 3.979 4 C 0.070 3.930 5 C 0.070 3.930 6 N -0.554 5.554 7 C 0.066 3.934 8 C -0.131 4.131 9 C 0.068 3.932 10 N -0.645 5.645 11 C 0.229 3.771 12 H -0.011 1.011 13 C -0.545 4.545 14 H 0.047 0.953 15 C 0.037 3.963 16 N -0.885 5.885 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.057 3.943 22 H 0.027 0.973 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.319 0.681 39 H 0.252 0.748 40 H 0.013 0.987 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 6.564 -7.603 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.127 4.127 4 C -0.058 4.058 5 C -0.058 4.058 6 N -0.279 5.279 7 C -0.062 4.062 8 C -0.171 4.171 9 C -0.062 4.062 10 N -0.273 5.273 11 C 0.119 3.881 12 H 0.007 0.993 13 C -0.585 4.585 14 H 0.065 0.935 15 C -0.166 4.166 16 N -0.521 5.521 17 Si 0.774 3.226 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.072 4.072 22 H 0.046 0.954 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.823 5.984 -7.182 16.688 hybrid contribution 0.652 0.373 -0.254 0.793 sum -13.171 6.357 -7.437 16.407 Atomic orbital electron populations 1.22415 0.85875 1.02815 1.01087 1.61933 1.09170 1.14597 1.42998 1.22461 1.00868 0.88330 1.01023 1.21993 0.93917 0.98487 0.91394 1.21954 0.95282 0.97838 0.90724 1.60525 1.09201 1.14507 1.43682 1.21835 0.98672 0.88430 0.97288 1.21237 0.98634 1.01624 0.95597 1.20741 0.91889 0.94995 0.98548 1.61053 1.24536 1.06005 1.35664 1.18687 0.91826 0.91698 0.85892 0.99333 1.21352 0.97942 1.07966 1.31208 0.93478 1.25589 1.00985 0.94809 0.95232 1.70180 1.36691 1.13567 1.31708 0.85825 0.80952 0.77938 0.77922 1.19946 1.21307 1.19966 1.23044 0.85043 1.01011 0.98106 0.95422 0.90107 0.91001 0.91796 0.90038 0.95473 0.90438 0.94512 0.91312 0.95258 0.96753 0.89479 0.90373 0.91250 0.95288 0.93105 0.86427 0.93869 0.96903 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.57 127.69 1.22 1.65 16 2 N -0.56 -11.98 5.02 -948.84 -4.76 -16.74 16 3 C 0.02 0.40 9.32 127.69 1.19 1.59 16 4 C 0.07 1.68 4.92 86.30 0.42 2.11 16 5 C 0.07 2.02 4.77 86.30 0.41 2.43 16 6 N -0.55 -19.05 4.02 -895.08 -3.60 -22.64 16 7 C 0.07 2.18 5.11 87.22 0.45 2.63 16 8 C -0.13 -4.26 5.50 28.91 0.16 -4.11 16 9 C 0.07 2.84 5.95 83.96 0.50 3.34 16 10 N -0.64 -31.14 5.68 -507.95 -2.89 -34.02 16 11 C 0.23 11.61 1.78 44.98 0.08 11.69 16 12 H -0.01 -0.65 6.55 -2.38 -0.02 -0.66 16 13 C -0.55 -30.70 8.63 25.60 0.22 -30.48 16 14 H 0.05 2.60 7.67 -2.91 -0.02 2.58 16 15 C 0.04 2.08 5.38 84.65 0.46 2.54 16 16 N -0.88 -52.67 12.75 21.45 0.27 -52.39 16 17 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.06 2.41 4.75 86.37 0.41 2.82 16 22 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.08 1.09 8.12 -2.38 -0.02 1.07 16 24 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 25 H 0.06 1.30 6.47 -2.38 -0.02 1.29 16 26 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 1.79 6.29 -2.39 -0.02 1.78 16 29 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.07 1.98 6.44 -2.39 -0.02 1.97 16 31 H 0.03 0.88 8.12 -2.39 -0.02 0.87 16 32 H 0.01 0.54 6.96 -2.39 -0.02 0.53 16 33 H 0.09 2.38 5.85 -2.39 -0.01 2.36 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 36 H 0.03 1.36 7.38 -2.39 -0.02 1.34 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.32 14.62 8.18 -89.69 -0.73 13.89 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 40 H 0.01 0.55 8.04 -2.39 -0.02 0.53 16 41 H 0.06 2.58 7.91 -2.39 -0.02 2.56 16 Total: -1.00 -61.93 311.33 -3.17 -65.10 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.25 Total: 17.76 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.52 Total: -3.80 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -10.97 Total: -125.80 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.93 -3.17 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220493236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.793 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds