Wall clock time and date at job start Mon Mar 30 2020 04:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46963 * 111.00014 * 2 1 4 4 C 1.53055 * 109.36357 * 183.18707 * 3 2 1 5 5 N 1.46959 * 109.36337 * 301.59345 * 4 3 2 6 6 C 1.46895 * 110.99914 * 183.19225 * 5 4 3 7 7 C 1.52996 * 109.47035 * 296.47268 * 6 5 4 8 8 C 1.53000 * 109.47155 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47509 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99619 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00237 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99871 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99804 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46913 * 120.00132 * 13 11 9 16 16 H 1.48502 * 109.46966 * 239.99831 * 13 11 9 17 17 C 1.46958 * 110.87925 * 59.32167 * 5 4 3 18 18 H 1.08999 * 109.48600 * 60.64886 * 17 5 4 19 19 C 1.52998 * 109.48822 * 180.71187 * 17 5 4 20 20 N 1.46903 * 109.47099 * 291.95990 * 19 17 5 21 21 C 1.46959 * 110.99759 * 123.79365 * 2 1 3 22 22 H 1.08999 * 109.47022 * 56.05218 * 1 2 3 23 23 H 1.09004 * 109.46931 * 176.04901 * 1 2 3 24 24 H 1.08991 * 109.47587 * 296.04947 * 1 2 3 25 25 H 1.08999 * 109.48937 * 63.21440 * 3 2 1 26 26 H 1.09002 * 109.50211 * 303.16218 * 3 2 1 27 27 H 1.09000 * 109.48290 * 181.63223 * 4 3 2 28 28 H 1.08993 * 109.48807 * 61.56272 * 4 3 2 29 29 H 1.08998 * 109.46929 * 176.47065 * 6 5 4 30 30 H 1.08996 * 109.47179 * 56.47382 * 6 5 4 31 31 H 1.08998 * 109.47427 * 60.00103 * 7 6 5 32 32 H 1.09002 * 109.47146 * 299.99647 * 7 6 5 33 33 H 1.08999 * 109.47631 * 59.99483 * 8 7 6 34 34 H 1.09008 * 109.46956 * 299.99623 * 8 7 6 35 35 H 0.96999 * 119.99815 * 180.02562 * 12 11 9 36 36 H 1.08999 * 109.47373 * 51.95787 * 19 17 5 37 37 H 1.08996 * 109.47190 * 171.96159 * 19 17 5 38 38 H 1.00903 * 110.99843 * 180.02562 * 20 19 17 39 39 H 1.00896 * 110.99836 * 303.94880 * 20 19 17 40 40 H 1.09003 * 109.49171 * 296.77742 * 21 2 1 41 41 H 1.08994 * 109.49041 * 56.82519 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5660 1.0599 6 6 5.5190 0.5660 1.0600 7 6 6.0291 -0.1493 -0.1925 8 6 7.5591 -0.1498 -0.1922 9 6 8.0616 -0.8539 -1.4262 10 1 7.3598 -1.2608 -2.1393 11 6 9.4171 -0.9787 -1.6450 12 7 10.2716 -0.4829 -0.7769 13 14 10.0398 -1.8521 -3.1743 14 1 8.8850 -2.3157 -3.9845 15 1 10.8648 -0.9148 -3.9782 16 1 10.8650 -3.0206 -2.7756 17 6 3.5234 -0.8060 1.0600 18 1 3.8254 -1.3114 0.1427 19 6 4.0768 -1.5651 2.2676 20 7 5.5212 -1.7715 2.0963 21 6 1.9955 -0.7631 1.1402 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0253 -0.0708 24 1 -0.3634 0.4512 0.9232 25 1 1.6936 1.8775 0.9173 26 1 1.6013 1.9132 -0.8601 27 1 3.9177 2.3449 -0.0512 28 1 3.8253 0.8479 -1.0105 29 1 5.8823 0.0481 1.9476 30 1 5.8823 1.5937 1.0648 31 1 5.6658 0.3686 -1.0802 32 1 5.6658 -1.1770 -0.1973 33 1 7.9221 -0.6680 0.6954 34 1 7.9227 0.8778 -0.1872 35 1 11.2253 -0.5704 -0.9310 36 1 3.8975 -0.9866 3.1738 37 1 3.5789 -2.5312 2.3488 38 1 5.9106 -2.2717 2.8813 39 1 5.7178 -2.2498 1.2299 40 1 1.6937 -0.2819 2.0705 41 1 1.6010 -1.7787 1.1114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226620933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:59 Heat of formation + Delta-G solvation = -7.632091 kcal Electronic energy + Delta-G solvation = -18495.297514 eV Core-core repulsion = 15830.152488 eV Total energy + Delta-G solvation = -2665.145027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79052 -37.50689 -35.58502 -34.89176 -33.00269 -31.52514 -29.81048 -27.36449 -26.03418 -24.97529 -23.83038 -22.72636 -22.04688 -19.92489 -18.44536 -17.21680 -16.97509 -16.53742 -16.38885 -15.98356 -15.57354 -15.48184 -14.97101 -14.76483 -14.57041 -14.10572 -13.63476 -13.25942 -13.09940 -13.06319 -12.94161 -12.73120 -12.51172 -12.38991 -12.25926 -12.16633 -11.73756 -11.63750 -11.22353 -11.17896 -11.10553 -10.49772 -9.33232 -9.18359 -8.95375 -8.14870 -6.25931 1.38545 1.39134 1.52066 2.42247 2.95847 3.09309 3.16666 3.65714 3.95682 4.11155 4.13821 4.32610 4.38997 4.40448 4.50607 4.57597 4.62043 4.69754 4.70581 4.76175 4.81205 4.86675 5.00832 5.01612 5.02943 5.15331 5.25121 5.41336 5.52895 5.76140 5.85786 5.97653 6.05282 6.06380 6.26942 6.28977 6.37102 6.43048 6.62594 6.91868 7.42553 8.95775 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.005479 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.052106 B = 5109.345203 C = 5375.573799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.564 5.564 3 C 0.067 3.933 4 C 0.047 3.953 5 N -0.524 5.524 6 C 0.048 3.952 7 C -0.105 4.105 8 C 0.039 3.961 9 C -0.538 4.538 10 H 0.049 0.951 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.276 1.276 17 C 0.083 3.917 18 H 0.028 0.972 19 C 0.075 3.925 20 N -0.848 5.848 21 C 0.070 3.930 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.132 0.868 30 H 0.034 0.966 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.005 0.995 34 H -0.024 1.024 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.346 0.654 39 H 0.341 0.659 40 H 0.045 0.955 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.070 -1.141 5.380 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.289 5.289 3 C -0.062 4.062 4 C -0.082 4.082 5 N -0.248 5.248 6 C -0.080 4.080 7 C -0.144 4.144 8 C 0.001 3.999 9 C -0.576 4.576 10 H 0.067 0.933 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.201 1.201 17 C -0.027 4.027 18 H 0.046 0.954 19 C -0.056 4.056 20 N -0.380 5.380 21 C -0.059 4.059 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.149 0.851 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.024 0.976 34 H -0.005 1.005 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.063 0.937 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.886 -0.334 5.435 19.655 hybrid contribution 0.692 -1.144 -0.974 1.655 sum -18.194 -1.479 4.460 18.791 Atomic orbital electron populations 1.22374 0.85553 1.02950 1.01073 1.62101 1.09271 1.14154 1.43347 1.22108 0.93430 0.89347 1.01268 1.22217 0.95136 0.98412 0.92424 1.62569 1.08134 1.13013 1.41042 1.22756 0.85723 0.98650 1.00893 1.21817 0.96597 0.99100 0.96862 1.18813 0.91793 0.93999 0.95290 1.21718 0.91930 1.36222 1.07708 0.93279 1.25898 0.97349 0.96545 0.99734 1.70106 1.02261 1.47254 1.37521 0.85493 0.78316 0.78371 0.79411 1.19083 1.20515 1.20109 1.21734 0.94209 0.89461 0.97285 0.95423 1.21740 0.87938 0.98204 0.97719 1.59121 1.13081 1.57570 1.08196 1.22109 0.92934 0.98965 0.91889 0.90692 0.90550 0.95022 0.93895 0.89391 0.90710 0.95967 0.85120 0.94695 0.96394 0.93089 0.97639 1.00516 0.92906 0.90097 0.93287 0.84011 0.84499 0.93675 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.60 127.69 1.23 1.70 16 2 N -0.56 -13.14 4.97 -921.93 -4.58 -17.72 16 3 C 0.07 1.59 5.62 86.31 0.49 2.08 16 4 C 0.05 1.41 5.22 86.31 0.45 1.86 16 5 N -0.52 -16.44 4.73 -870.51 -4.12 -20.56 16 6 C 0.05 1.78 4.76 86.30 0.41 2.19 16 7 C -0.10 -4.58 3.88 30.59 0.12 -4.46 16 8 C 0.04 2.11 4.97 29.85 0.15 2.26 16 9 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 10 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 11 C 0.00 0.13 5.46 84.65 0.46 0.60 16 12 N -0.93 -57.68 13.29 21.44 0.28 -57.39 16 13 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.08 2.28 1.93 44.92 0.09 2.37 16 18 H 0.03 0.92 6.47 -2.39 -0.02 0.91 16 19 C 0.08 1.80 6.09 86.30 0.53 2.32 16 20 N -0.85 -23.64 5.65 -186.72 -1.06 -24.70 16 21 C 0.07 1.57 4.90 86.31 0.42 1.99 16 22 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 27 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.02 0.78 6.56 -2.39 -0.02 0.76 16 29 H 0.13 4.91 5.13 -2.39 -0.01 4.90 16 30 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.02 0.81 6.55 -2.39 -0.02 0.79 16 32 H 0.05 2.16 4.49 -2.39 -0.01 2.15 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H -0.02 -1.42 8.14 -2.38 -0.02 -1.44 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 38 H 0.35 8.20 9.08 -89.69 -0.81 7.39 16 39 H 0.34 10.65 7.00 -89.70 -0.63 10.03 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.10 308.15 -3.31 -69.41 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -0.44 Total: 22.01 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.57 Total: -18.45 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -9.47 Total: -120.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.10 -3.31 -69.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226620933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.775 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds