Wall clock time and date at job start Mon Mar 30 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46894 * 110.99842 * 2 1 4 4 C 1.50701 * 109.47049 * 293.94971 * 3 2 1 5 5 H 1.08000 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00121 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00064 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46871 * 60.00195 * 8 6 4 10 10 H 1.48495 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47190 * 300.00684 * 8 6 4 12 12 C 1.46900 * 110.99546 * 123.95063 * 2 1 3 13 13 C 1.53003 * 109.47407 * 66.04524 * 12 2 1 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 2 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 2 16 16 C 1.53001 * 109.47376 * 184.99739 * 13 12 2 17 17 C 1.53004 * 109.46882 * 175.00297 * 16 13 12 18 18 C 1.54263 * 110.03200 * 292.16638 * 17 16 13 19 19 C 1.54883 * 104.19350 * 217.10784 * 18 17 16 20 20 C 1.54889 * 102.75007 * 37.94675 * 19 18 17 21 21 C 1.53878 * 110.02543 * 175.00049 * 17 16 13 22 22 H 1.08991 * 109.47276 * 296.05168 * 1 2 3 23 23 H 1.09005 * 109.46723 * 56.04923 * 1 2 3 24 24 H 1.09001 * 109.47097 * 176.04356 * 1 2 3 25 25 H 1.08995 * 109.47552 * 53.94887 * 3 2 1 26 26 H 1.09000 * 109.46814 * 173.95209 * 3 2 1 27 27 H 0.96998 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47208 * 306.04835 * 12 2 1 29 29 H 1.08999 * 109.46786 * 186.04614 * 12 2 1 30 30 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 31 31 H 1.09000 * 109.47014 * 295.00359 * 16 13 12 32 32 H 1.08997 * 109.46686 * 54.99986 * 16 13 12 33 33 H 1.08999 * 110.01786 * 53.61227 * 17 16 13 34 34 H 1.09000 * 110.48366 * 335.78797 * 18 17 16 35 35 H 1.09003 * 110.48546 * 98.42716 * 18 17 16 36 36 H 1.08994 * 110.75947 * 279.62403 * 19 18 17 37 37 H 1.09007 * 110.91169 * 156.32948 * 19 18 17 38 38 H 1.09009 * 110.48597 * 203.37937 * 20 19 18 39 39 H 1.08994 * 110.60219 * 80.78876 * 20 19 18 40 40 H 1.08996 * 110.02889 * 238.56727 * 21 17 16 41 41 H 1.08997 * 110.03594 * 359.95285 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5113 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7136 4.0012 -0.6159 8 14 1.5840 4.1863 -3.1388 9 1 0.1068 4.2235 -3.2867 10 1 2.1160 5.5727 -3.1388 11 1 2.1757 3.4284 -4.2705 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2426 0.9705 14 1 0.5531 -2.3389 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0698 -3.0198 2.2134 17 6 1.5958 -4.4703 2.1013 18 6 0.0568 -4.5314 2.1881 19 6 -0.2272 -5.8247 2.9916 20 6 0.9062 -5.8270 4.0474 21 6 2.1359 -5.2940 3.2835 22 1 -0.3633 0.4513 0.9232 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9274 0.8308 26 1 3.0797 1.3443 0.1083 27 1 2.9882 4.9173 -0.7778 28 1 1.5610 -0.3871 2.0629 29 1 3.0797 -0.6611 1.1757 30 1 3.2601 -2.7167 -0.1357 31 1 3.1568 -2.9978 2.2910 32 1 1.6328 -2.5622 3.1009 33 1 1.9349 -4.9019 1.1596 34 1 -0.3303 -3.6607 2.7173 35 1 -0.3792 -4.5981 1.1913 36 1 -0.1579 -6.7021 2.3486 37 1 -1.2038 -5.7769 3.4734 38 1 1.0901 -6.8393 4.4075 39 1 0.6576 -5.1668 4.8783 40 1 2.7363 -6.1259 2.9155 41 1 2.7363 -4.6607 3.9365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232135472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:32 Heat of formation + Delta-G solvation = -75.576571 kcal Electronic energy + Delta-G solvation = -17782.623406 eV Core-core repulsion = 15082.239334 eV Total energy + Delta-G solvation = -2700.384072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.02010 -37.28751 -35.37894 -32.50872 -31.67902 -28.88876 -28.52766 -26.98457 -25.58156 -23.63154 -21.47064 -20.66465 -20.18976 -19.45719 -16.50629 -16.19353 -15.74744 -15.37655 -14.95759 -14.73693 -14.24070 -13.75806 -13.53671 -13.42788 -13.14669 -12.59223 -12.00475 -11.87489 -11.39977 -11.25975 -11.17796 -11.13600 -11.00582 -10.86691 -10.81820 -10.75878 -10.68353 -10.56423 -10.39768 -10.15341 -9.93423 -9.49468 -9.03840 -8.40736 -7.14883 -6.00011 -4.01011 3.36026 3.39386 3.43185 4.38995 4.47858 4.54266 4.57532 4.76103 5.00893 5.20695 5.23355 5.33894 5.35003 5.41711 5.53091 5.54985 5.57390 5.70007 5.72728 5.75227 5.83738 5.94658 5.99574 6.05961 6.13637 6.18853 6.19492 6.26354 6.36708 6.44522 6.53245 6.79695 7.30777 7.36330 7.83342 8.04514 8.15290 8.25101 8.59543 9.06841 9.63027 11.10978 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056009 B = 0.004070 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.803177 B = 6877.309557 C = 6986.012016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.023 3.977 13 C 0.111 3.889 14 H 0.095 0.905 15 O -0.548 6.548 16 C -0.144 4.144 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.122 4.122 22 H 0.008 0.992 23 H 0.074 0.926 24 H 0.046 0.954 25 H -0.012 1.012 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.368 0.632 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -17.511 8.617 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.106 4.106 13 C 0.051 3.949 14 H 0.113 0.887 15 O -0.352 6.352 16 C -0.183 4.183 17 C -0.106 4.106 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.160 4.160 22 H 0.026 0.974 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.006 0.994 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.214 0.786 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.011 -17.654 8.025 19.624 hybrid contribution 0.161 1.208 0.261 1.247 sum -2.850 -16.445 8.286 18.634 Atomic orbital electron populations 1.22250 0.89151 0.99480 1.00342 1.62041 1.06712 1.17363 1.39344 1.19735 0.95250 0.81742 0.96551 1.21146 1.34692 0.96872 1.01712 0.91857 1.24995 0.95329 0.97347 0.97014 1.69949 1.38472 1.11488 1.34179 0.86547 0.78693 0.78261 0.83832 1.20290 1.21394 1.20114 1.22791 1.00360 0.94283 0.93171 1.21974 0.97610 0.90882 0.84391 0.88693 1.86567 1.22950 1.83947 1.41767 1.22436 1.01194 0.95472 0.99169 1.21705 0.95170 0.94995 0.98717 1.22460 0.95655 0.97536 1.00206 1.22494 0.98158 0.98183 0.97489 1.22353 0.95414 1.00518 0.97961 1.22241 0.97516 0.99225 0.97008 0.97391 0.90737 0.93542 0.99372 0.95419 0.92919 0.95567 0.91361 0.78607 0.91770 0.91362 0.90314 0.91644 0.91562 0.91715 0.91904 0.92136 0.91850 0.92131 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.07 0.55 1.29 16 2 N -0.53 -11.83 4.70 -244.37 -1.15 -12.98 16 3 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 4 C -0.51 -14.58 8.46 -34.44 -0.29 -14.87 16 5 H 0.06 1.81 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.02 0.42 4.59 -3.82 -0.02 0.40 16 13 C 0.11 1.63 2.84 -26.73 -0.08 1.56 16 14 H 0.10 1.46 5.56 -51.93 -0.29 1.18 16 15 O -0.55 -8.66 12.74 -35.23 -0.45 -9.11 16 16 C -0.14 -1.68 4.02 -26.73 -0.11 -1.78 16 17 C -0.09 -0.93 2.88 -89.50 -0.26 -1.19 16 18 C -0.12 -1.26 5.46 -25.08 -0.14 -1.40 16 19 C -0.13 -1.12 6.91 -24.74 -0.17 -1.29 16 20 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 21 C -0.12 -1.13 6.46 -25.61 -0.17 -1.29 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 24 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 25 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 26 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 30 H 0.37 4.74 9.05 45.56 0.41 5.15 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 33 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 34 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -31.01 320.89 -8.75 -39.75 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.73 Total: 0.17 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.97 Total: -13.21 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.41 Total: -39.44 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.45 Total: -9.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.01 -8.75 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.822 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds