Wall clock time and date at job start Mon Mar 30 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46894 * 110.99842 * 2 1 4 4 C 1.50701 * 109.47049 * 293.94971 * 3 2 1 5 5 H 1.08000 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00121 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00064 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46871 * 60.00195 * 8 6 4 10 10 H 1.48495 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47190 * 300.00684 * 8 6 4 12 12 C 1.46900 * 110.99546 * 123.95063 * 2 1 3 13 13 C 1.53003 * 109.47407 * 66.04524 * 12 2 1 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 2 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 2 16 16 C 1.53001 * 109.47376 * 184.99739 * 13 12 2 17 17 C 1.53004 * 109.46882 * 175.00297 * 16 13 12 18 18 C 1.54263 * 110.03200 * 292.16638 * 17 16 13 19 19 C 1.54883 * 104.19350 * 217.10784 * 18 17 16 20 20 C 1.54889 * 102.75007 * 37.94675 * 19 18 17 21 21 C 1.53878 * 110.02543 * 175.00049 * 17 16 13 22 22 H 1.08991 * 109.47276 * 296.05168 * 1 2 3 23 23 H 1.09005 * 109.46723 * 56.04923 * 1 2 3 24 24 H 1.09001 * 109.47097 * 176.04356 * 1 2 3 25 25 H 1.08995 * 109.47552 * 53.94887 * 3 2 1 26 26 H 1.09000 * 109.46814 * 173.95209 * 3 2 1 27 27 H 0.96998 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47208 * 306.04835 * 12 2 1 29 29 H 1.08999 * 109.46786 * 186.04614 * 12 2 1 30 30 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 31 31 H 1.09000 * 109.47014 * 295.00359 * 16 13 12 32 32 H 1.08997 * 109.46686 * 54.99986 * 16 13 12 33 33 H 1.08999 * 110.01786 * 53.61227 * 17 16 13 34 34 H 1.09000 * 110.48366 * 335.78797 * 18 17 16 35 35 H 1.09003 * 110.48546 * 98.42716 * 18 17 16 36 36 H 1.08994 * 110.75947 * 279.62403 * 19 18 17 37 37 H 1.09007 * 110.91169 * 156.32948 * 19 18 17 38 38 H 1.09009 * 110.48597 * 203.37937 * 20 19 18 39 39 H 1.08994 * 110.60219 * 80.78876 * 20 19 18 40 40 H 1.08996 * 110.02889 * 238.56727 * 21 17 16 41 41 H 1.08997 * 110.03594 * 359.95285 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5113 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 2.7136 4.0012 -0.6159 8 14 1.5840 4.1863 -3.1388 9 1 0.1068 4.2235 -3.2867 10 1 2.1160 5.5727 -3.1388 11 1 2.1757 3.4284 -4.2705 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2426 0.9705 14 1 0.5531 -2.3389 0.8434 15 8 2.2956 -2.7696 -0.1798 16 6 2.0698 -3.0198 2.2134 17 6 1.5958 -4.4703 2.1013 18 6 0.0568 -4.5314 2.1881 19 6 -0.2272 -5.8247 2.9916 20 6 0.9062 -5.8270 4.0474 21 6 2.1359 -5.2940 3.2835 22 1 -0.3633 0.4513 0.9232 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9274 0.8308 26 1 3.0797 1.3443 0.1083 27 1 2.9882 4.9173 -0.7778 28 1 1.5610 -0.3871 2.0629 29 1 3.0797 -0.6611 1.1757 30 1 3.2601 -2.7167 -0.1357 31 1 3.1568 -2.9978 2.2910 32 1 1.6328 -2.5622 3.1009 33 1 1.9349 -4.9019 1.1596 34 1 -0.3303 -3.6607 2.7173 35 1 -0.3792 -4.5981 1.1913 36 1 -0.1579 -6.7021 2.3486 37 1 -1.2038 -5.7769 3.4734 38 1 1.0901 -6.8393 4.4075 39 1 0.6576 -5.1668 4.8783 40 1 2.7363 -6.1259 2.9155 41 1 2.7363 -4.6607 3.9365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232135472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:24 Heat of formation + Delta-G solvation = -96.732453 kcal Electronic energy + Delta-G solvation = -17783.540794 eV Core-core repulsion = 15082.239334 eV Total energy + Delta-G solvation = -2701.301460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05860 -38.53813 -36.90686 -34.62850 -32.73187 -30.13814 -29.51895 -28.79379 -27.06956 -25.17627 -22.89998 -21.89385 -21.34388 -20.34976 -18.56131 -17.34820 -17.08244 -16.62546 -16.46335 -15.97711 -15.66853 -15.36767 -15.05127 -14.30926 -14.17724 -14.11098 -13.77611 -13.25039 -13.06282 -12.74353 -12.58341 -12.51818 -12.41954 -12.12944 -11.95714 -11.89723 -11.86728 -11.75868 -11.47744 -11.45687 -11.26357 -11.20905 -10.62445 -10.52976 -8.97009 -8.21531 -6.31899 1.40428 1.44015 1.52035 2.39882 3.10294 3.18763 3.67354 3.73264 3.80530 3.85945 4.04304 4.23611 4.30672 4.45464 4.52091 4.59857 4.62068 4.70265 4.71882 4.78346 4.82362 4.90528 4.96004 5.02791 5.04748 5.12562 5.15079 5.16665 5.26184 5.30342 5.31769 5.44754 5.52311 5.62375 5.63734 6.03888 6.31558 6.62702 6.83921 6.99474 7.37892 8.89393 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056009 B = 0.004070 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.803177 B = 6877.309557 C = 6986.012016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.124 3.876 14 H 0.090 0.910 15 O -0.564 6.564 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.121 4.121 22 H 0.011 0.989 23 H 0.055 0.945 24 H 0.075 0.925 25 H -0.040 1.040 26 H 0.003 0.997 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.380 0.620 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -18.661 8.554 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.107 4.107 13 C 0.064 3.936 14 H 0.108 0.892 15 O -0.370 6.370 16 C -0.173 4.173 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.158 4.158 22 H 0.029 0.971 23 H 0.074 0.926 24 H 0.094 0.906 25 H -0.022 1.022 26 H 0.021 0.979 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.476 -18.830 7.971 20.741 hybrid contribution 0.321 1.532 0.315 1.597 sum -3.154 -17.298 8.286 19.438 Atomic orbital electron populations 1.22228 0.87950 1.01005 0.99638 1.61966 1.07911 1.14846 1.41785 1.19394 0.93588 0.84016 0.94924 1.21449 1.34981 0.97582 1.02404 0.92085 1.25928 0.94939 0.97988 1.00799 1.70073 1.39277 1.11941 1.36283 0.85419 0.78857 0.77165 0.79083 1.19212 1.20652 1.19351 1.22940 1.00104 0.95879 0.91776 1.21854 0.97316 0.88783 0.85638 0.89177 1.86531 1.24183 1.83824 1.42464 1.22338 1.01802 0.95681 0.97463 1.21661 0.95398 0.94274 0.98987 1.22477 0.95419 0.98362 0.99979 1.22494 0.98790 0.97374 0.97474 1.22361 0.94752 1.01250 0.97746 1.22225 0.97923 0.99228 0.96440 0.97082 0.92619 0.90616 1.02231 0.97896 0.92622 0.95223 0.91613 0.77231 0.90865 0.90846 0.91334 0.91924 0.92473 0.91428 0.91157 0.90958 0.91670 0.91543 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -24.32 4.70 -927.05 -4.36 -28.68 16 3 C 0.21 11.42 4.72 85.56 0.40 11.83 16 4 C -0.53 -30.78 8.46 25.60 0.22 -30.56 16 5 H 0.06 3.53 7.12 -2.91 -0.02 3.50 16 6 C 0.00 0.08 5.46 84.66 0.46 0.54 16 7 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.02 0.77 4.59 86.30 0.40 1.17 16 13 C 0.12 3.50 2.84 30.60 0.09 3.59 16 14 H 0.09 2.65 5.56 -2.39 -0.01 2.64 16 15 O -0.56 -17.20 12.74 -148.98 -1.90 -19.10 16 16 C -0.13 -2.90 4.02 30.60 0.12 -2.78 16 17 C -0.08 -1.66 2.88 -10.07 -0.03 -1.68 16 18 C -0.12 -2.41 5.46 31.67 0.17 -2.23 16 19 C -0.12 -1.95 6.91 31.88 0.22 -1.73 16 20 C -0.12 -1.81 6.83 31.67 0.22 -1.60 16 21 C -0.12 -1.95 6.46 31.32 0.20 -1.75 16 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.05 2.44 6.76 -2.38 -0.02 2.42 16 24 H 0.08 2.60 6.37 -2.39 -0.02 2.58 16 25 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 26 H 0.00 0.17 7.93 -2.39 -0.02 0.15 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.03 1.04 8.12 -2.38 -0.02 1.02 16 29 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 30 H 0.38 9.40 9.05 -74.06 -0.67 8.73 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.53 8.00 -2.39 -0.02 1.51 16 33 H 0.07 1.50 7.69 -2.39 -0.02 1.48 16 34 H 0.06 1.23 7.76 -2.39 -0.02 1.22 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 Total: -1.00 -66.12 320.89 0.00 -66.12 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.31 Total: 13.89 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.64 Total: -22.43 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.07 Total: -85.61 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.90 Total: -19.10 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.12 0.00 -66.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.610 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds