Wall clock time and date at job start Mon Mar 30 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.50706 * 109.46929 * 66.04676 * 3 2 1 5 5 H 1.07998 * 119.99628 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00067 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46996 * 120.00182 * 8 6 4 11 11 H 1.48497 * 109.47528 * 240.00000 * 8 6 4 12 12 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 13 13 C 1.53005 * 109.46590 * 293.95038 * 12 2 1 14 14 H 1.09000 * 109.47130 * 60.00458 * 13 12 2 15 15 O 1.42898 * 109.47387 * 299.99803 * 13 12 2 16 16 C 1.52999 * 109.46704 * 179.97438 * 13 12 2 17 17 C 1.53001 * 109.47023 * 184.99994 * 16 13 12 18 18 C 1.54266 * 110.03419 * 292.17003 * 17 16 13 19 19 C 1.54894 * 104.19526 * 217.10480 * 18 17 16 20 20 C 1.54889 * 102.74763 * 37.94072 * 19 18 17 21 21 C 1.53882 * 110.03364 * 175.00089 * 17 16 13 22 22 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 23 23 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 25 25 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 27 27 H 0.96995 * 119.99723 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47196 * 53.94614 * 12 2 1 29 29 H 1.09000 * 109.47010 * 173.95423 * 12 2 1 30 30 H 0.96698 * 113.99772 * 300.00241 * 15 13 12 31 31 H 1.08993 * 109.47658 * 304.99917 * 16 13 12 32 32 H 1.09005 * 109.47244 * 65.00293 * 16 13 12 33 33 H 1.08994 * 110.01699 * 53.61216 * 17 16 13 34 34 H 1.09006 * 110.48346 * 335.77774 * 18 17 16 35 35 H 1.08995 * 110.49029 * 98.42746 * 18 17 16 36 36 H 1.08999 * 110.75628 * 279.62629 * 19 18 17 37 37 H 1.08999 * 110.91234 * 156.32795 * 19 18 17 38 38 H 1.09004 * 110.48423 * 203.37667 * 20 19 18 39 39 H 1.09004 * 110.48716 * 80.73755 * 20 19 18 40 40 H 1.08998 * 110.03084 * 238.56947 * 21 17 16 41 41 H 1.08994 * 110.02907 * 359.95369 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3491 1.5290 7 7 2.7127 4.0016 0.6154 8 14 1.5825 4.1868 3.1381 9 1 0.8145 3.2445 3.9909 10 1 2.8240 4.5934 3.8444 11 1 0.7560 5.3884 2.8587 12 6 1.9955 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5473 -2.3475 -0.9324 15 8 2.2010 -2.7391 0.2426 16 6 2.1793 -3.0402 -2.1555 17 6 1.7102 -4.4929 -2.0530 18 6 2.3779 -5.1798 -0.8439 19 6 2.6513 -6.6245 -1.3310 20 6 3.0676 -6.4142 -2.8080 21 6 2.1487 -5.2778 -3.3019 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 2.9879 4.9174 0.7777 28 1 1.5611 -0.3872 -2.0628 29 1 3.0798 -0.6610 -1.1756 30 1 3.1653 -2.6771 0.2786 31 1 1.8144 -2.6054 -3.0859 32 1 3.2689 -3.0084 -2.1424 33 1 0.6256 -4.5284 -1.9515 34 1 3.3125 -4.6798 -0.5892 35 1 1.7026 -5.1871 0.0117 36 1 1.7481 -7.2312 -1.2668 37 1 3.4620 -7.0800 -0.7623 38 1 2.8955 -7.3223 -3.3858 39 1 4.1135 -6.1136 -2.8705 40 1 1.2769 -5.6949 -3.8059 41 1 2.6950 -4.6235 -3.9813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232135474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:40 Heat of formation + Delta-G solvation = -73.831511 kcal Electronic energy + Delta-G solvation = -17833.123902 eV Core-core repulsion = 15132.815502 eV Total energy + Delta-G solvation = -2700.308400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.05007 -37.21398 -35.31282 -32.50584 -31.68767 -28.68319 -28.62735 -26.98526 -25.59462 -23.56996 -21.28306 -20.70307 -20.27543 -19.45329 -16.46692 -16.25126 -15.65814 -15.41547 -14.79485 -14.73409 -14.15677 -13.85919 -13.60114 -13.33482 -13.02840 -12.55194 -12.00250 -11.81875 -11.45081 -11.24997 -11.18238 -11.12018 -10.95079 -10.86133 -10.77049 -10.68186 -10.61094 -10.53521 -10.40086 -10.18757 -9.88562 -9.43087 -8.99500 -8.41493 -7.14311 -6.00400 -4.01168 3.32901 3.40086 3.45976 4.39406 4.49632 4.60371 4.61284 4.79669 4.98712 5.18149 5.33612 5.36394 5.40457 5.41879 5.53056 5.57828 5.66740 5.68264 5.76848 5.83738 5.86997 5.95338 6.07686 6.08989 6.13133 6.24236 6.26646 6.36950 6.37045 6.44684 6.54197 6.80148 7.30777 7.36509 7.83909 8.05668 8.15988 8.25378 8.59678 9.07478 9.63086 11.10689 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054629 B = 0.004099 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.425959 B = 6829.891798 C = 6957.046375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.023 3.977 13 C 0.113 3.887 14 H 0.091 0.909 15 O -0.543 6.543 16 C -0.145 4.145 17 C -0.086 4.086 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.123 4.123 22 H 0.008 0.992 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.028 0.972 26 H -0.012 1.012 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.367 0.633 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 -18.104 -7.186 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.253 5.253 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.107 4.107 13 C 0.054 3.946 14 H 0.109 0.891 15 O -0.347 6.347 16 C -0.183 4.183 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.161 4.161 22 H 0.026 0.974 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.006 0.994 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.213 0.787 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.797 -18.255 -6.645 19.443 hybrid contribution 0.139 1.242 -0.282 1.281 sum -0.658 -17.013 -6.927 18.381 Atomic orbital electron populations 1.22223 0.89124 0.99125 1.00568 1.62039 1.06737 1.17299 1.39269 1.19755 0.95244 0.81786 0.96575 1.21222 1.34477 0.96828 1.01668 0.91753 1.25002 0.95368 0.97377 0.97026 1.69976 1.38664 1.11397 1.34062 0.86437 0.78148 0.79266 0.83560 1.19614 1.21022 1.21166 1.22778 1.00324 0.94333 0.93222 1.21916 0.98079 0.91025 0.83628 0.89093 1.86586 1.24872 1.84742 1.38542 1.22429 1.01188 0.95334 0.99376 1.21701 0.99989 0.94129 0.94649 1.22377 1.00895 0.93676 0.97341 1.22579 1.00691 0.97868 0.95725 1.22348 0.99424 0.98053 0.96377 1.22251 0.99109 0.97096 0.97609 0.97376 0.93543 0.90929 0.95432 0.99384 0.93048 0.95629 0.91407 0.78660 0.91495 0.91624 0.91417 0.91523 0.91098 0.91996 0.91982 0.92276 0.91877 0.92260 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.16 60.06 0.55 1.33 16 2 N -0.53 -11.70 4.62 -244.37 -1.13 -12.83 16 3 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 4 C -0.50 -14.48 8.51 -34.44 -0.29 -14.77 16 5 H 0.06 1.85 7.10 -52.49 -0.37 1.48 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.02 0.40 4.62 -3.82 -0.02 0.38 16 13 C 0.11 1.63 2.84 -26.73 -0.08 1.55 16 14 H 0.09 1.37 6.47 -51.93 -0.34 1.04 16 15 O -0.54 -8.24 10.76 -35.23 -0.38 -8.62 16 16 C -0.14 -1.66 4.15 -26.73 -0.11 -1.77 16 17 C -0.09 -0.91 2.93 -89.50 -0.26 -1.17 16 18 C -0.11 -1.11 4.74 -25.07 -0.12 -1.23 16 19 C -0.13 -1.20 6.91 -24.74 -0.17 -1.37 16 20 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 21 C -0.12 -1.14 6.46 -25.61 -0.17 -1.31 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 23 H 0.05 0.82 6.30 -51.93 -0.33 0.49 16 24 H 0.07 1.58 6.86 -51.93 -0.36 1.22 16 25 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 26 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 30 H 0.37 4.72 8.62 45.56 0.39 5.11 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.72 8.00 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.71 6.85 -51.93 -0.36 0.35 16 35 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -30.66 318.17 -8.72 -39.38 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.76 Total: -0.18 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.96 Total: -13.08 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.39 Total: -39.27 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.38 Total: -8.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.66 -8.72 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.450 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds