Wall clock time and date at job start Mon Mar 30 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.50706 * 109.46929 * 66.04676 * 3 2 1 5 5 H 1.07998 * 119.99628 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00067 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46996 * 120.00182 * 8 6 4 11 11 H 1.48497 * 109.47528 * 240.00000 * 8 6 4 12 12 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 13 13 C 1.53005 * 109.46590 * 293.95038 * 12 2 1 14 14 H 1.09000 * 109.47130 * 60.00458 * 13 12 2 15 15 O 1.42898 * 109.47387 * 299.99803 * 13 12 2 16 16 C 1.52999 * 109.46704 * 179.97438 * 13 12 2 17 17 C 1.53001 * 109.47023 * 184.99994 * 16 13 12 18 18 C 1.54266 * 110.03419 * 292.17003 * 17 16 13 19 19 C 1.54894 * 104.19526 * 217.10480 * 18 17 16 20 20 C 1.54889 * 102.74763 * 37.94072 * 19 18 17 21 21 C 1.53882 * 110.03364 * 175.00089 * 17 16 13 22 22 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 23 23 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 25 25 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 27 27 H 0.96995 * 119.99723 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47196 * 53.94614 * 12 2 1 29 29 H 1.09000 * 109.47010 * 173.95423 * 12 2 1 30 30 H 0.96698 * 113.99772 * 300.00241 * 15 13 12 31 31 H 1.08993 * 109.47658 * 304.99917 * 16 13 12 32 32 H 1.09005 * 109.47244 * 65.00293 * 16 13 12 33 33 H 1.08994 * 110.01699 * 53.61216 * 17 16 13 34 34 H 1.09006 * 110.48346 * 335.77774 * 18 17 16 35 35 H 1.08995 * 110.49029 * 98.42746 * 18 17 16 36 36 H 1.08999 * 110.75628 * 279.62629 * 19 18 17 37 37 H 1.08999 * 110.91234 * 156.32795 * 19 18 17 38 38 H 1.09004 * 110.48423 * 203.37667 * 20 19 18 39 39 H 1.09004 * 110.48716 * 80.73755 * 20 19 18 40 40 H 1.08998 * 110.03084 * 238.56947 * 21 17 16 41 41 H 1.08994 * 110.02907 * 359.95369 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3491 1.5290 7 7 2.7127 4.0016 0.6154 8 14 1.5825 4.1868 3.1381 9 1 0.8145 3.2445 3.9909 10 1 2.8240 4.5934 3.8444 11 1 0.7560 5.3884 2.8587 12 6 1.9955 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5473 -2.3475 -0.9324 15 8 2.2010 -2.7391 0.2426 16 6 2.1793 -3.0402 -2.1555 17 6 1.7102 -4.4929 -2.0530 18 6 2.3779 -5.1798 -0.8439 19 6 2.6513 -6.6245 -1.3310 20 6 3.0676 -6.4142 -2.8080 21 6 2.1487 -5.2778 -3.3019 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 2.9879 4.9174 0.7777 28 1 1.5611 -0.3872 -2.0628 29 1 3.0798 -0.6610 -1.1756 30 1 3.1653 -2.6771 0.2786 31 1 1.8144 -2.6054 -3.0859 32 1 3.2689 -3.0084 -2.1424 33 1 0.6256 -4.5284 -1.9515 34 1 3.3125 -4.6798 -0.5892 35 1 1.7026 -5.1871 0.0117 36 1 1.7481 -7.2312 -1.2668 37 1 3.4620 -7.0800 -0.7623 38 1 2.8955 -7.3223 -3.3858 39 1 4.1135 -6.1136 -2.8705 40 1 1.2769 -5.6949 -3.8059 41 1 2.6950 -4.6235 -3.9813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232135474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:38 Heat of formation + Delta-G solvation = -94.291898 kcal Electronic energy + Delta-G solvation = -17834.011131 eV Core-core repulsion = 15132.815502 eV Total energy + Delta-G solvation = -2701.195629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.08422 -38.48703 -36.79451 -34.61779 -32.73838 -30.11515 -29.42232 -28.79960 -27.08944 -25.13780 -22.76859 -21.81497 -21.43666 -20.36820 -18.55626 -17.35829 -16.96875 -16.75883 -16.30811 -15.95010 -15.60388 -15.29100 -15.09829 -14.41755 -14.07626 -13.94103 -13.78881 -13.29290 -12.89500 -12.74461 -12.60227 -12.57625 -12.39799 -12.19160 -12.02346 -11.89786 -11.70549 -11.64718 -11.44558 -11.37742 -11.25959 -11.19578 -10.63362 -10.40758 -8.95807 -8.21735 -6.31798 1.40218 1.40931 1.55088 2.39886 3.10316 3.19304 3.75330 3.77461 3.80388 3.85157 4.08870 4.27028 4.33550 4.44631 4.52046 4.64529 4.69786 4.72054 4.76416 4.81503 4.82468 4.92693 5.01709 5.05511 5.09072 5.15409 5.16114 5.18039 5.28027 5.33871 5.36798 5.53046 5.55441 5.64170 5.65283 6.04269 6.32512 6.63571 6.84813 7.02165 7.38190 8.89595 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054629 B = 0.004099 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.425959 B = 6829.891798 C = 6957.046375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.206 3.794 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.021 3.979 13 C 0.126 3.874 14 H 0.088 0.912 15 O -0.555 6.555 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.121 4.121 22 H 0.008 0.992 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.003 0.997 26 H -0.041 1.041 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.377 0.623 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -19.277 -7.054 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.107 4.107 13 C 0.066 3.934 14 H 0.106 0.894 15 O -0.361 6.361 16 C -0.173 4.173 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.167 4.167 20 C -0.160 4.160 21 C -0.159 4.159 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.021 0.979 26 H -0.023 1.023 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.225 0.775 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.061 -19.454 -6.522 20.545 hybrid contribution 0.232 1.575 -0.357 1.632 sum -0.829 -17.879 -6.879 19.174 Atomic orbital electron populations 1.22200 0.87994 1.00772 0.99654 1.61959 1.07851 1.14731 1.41709 1.19416 0.93607 0.84090 0.94894 1.21502 1.34739 0.97516 1.02335 0.92110 1.25929 0.94997 0.98027 1.00790 1.70093 1.39458 1.11916 1.36164 0.85312 0.78135 0.78137 0.78902 1.18863 1.20236 1.20305 1.22928 1.00043 0.95986 0.91763 1.21799 0.97982 0.88859 0.84737 0.89444 1.86562 1.25900 1.84576 1.39075 1.22325 1.01469 0.95489 0.98020 1.21680 0.99682 0.93532 0.95449 1.22342 1.00354 0.94804 0.96830 1.22572 1.01064 0.96891 0.96176 1.22350 0.99354 0.98327 0.95989 1.22234 0.99568 0.97171 0.96910 0.97345 0.90517 0.92775 0.97859 1.02309 0.92659 0.95391 0.91672 0.77547 0.90828 0.90972 0.91901 0.91752 0.92664 0.91761 0.91429 0.91146 0.91703 0.91591 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 9.16 127.69 1.17 2.87 16 2 N -0.54 -23.98 4.62 -927.04 -4.28 -28.27 16 3 C 0.21 11.33 4.72 85.56 0.40 11.74 16 4 C -0.52 -30.53 8.51 25.60 0.22 -30.31 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.02 0.75 4.62 86.30 0.40 1.15 16 13 C 0.13 3.47 2.84 30.60 0.09 3.56 16 14 H 0.09 2.49 6.47 -2.39 -0.02 2.48 16 15 O -0.56 -16.27 10.76 -148.98 -1.60 -17.87 16 16 C -0.13 -2.85 4.15 30.59 0.13 -2.72 16 17 C -0.08 -1.63 2.93 -10.07 -0.03 -1.66 16 18 C -0.11 -2.08 4.74 31.67 0.15 -1.93 16 19 C -0.13 -2.12 6.91 31.89 0.22 -1.90 16 20 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 21 C -0.12 -1.96 6.46 31.32 0.20 -1.76 16 22 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 23 H 0.08 2.61 6.30 -2.39 -0.02 2.60 16 24 H 0.05 2.36 6.86 -2.39 -0.02 2.34 16 25 H 0.00 0.19 7.93 -2.39 -0.02 0.18 16 26 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 29 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 30 H 0.38 9.33 8.62 -74.06 -0.64 8.69 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.45 8.00 -2.38 -0.02 1.43 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.28 6.85 -2.38 -0.02 1.27 16 35 H 0.05 1.25 7.89 -2.39 -0.02 1.24 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 Total: -1.00 -65.39 318.17 0.39 -65.00 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.34 Total: 12.97 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.63 Total: -22.11 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -4.00 Total: -85.15 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.60 Total: -17.87 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.39 0.39 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.293 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds