Wall clock time and date at job start Mon Mar 30 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.47076 * 2 1 4 4 C 1.36939 * 119.99574 * 91.65689 * 3 2 1 5 5 H 1.07998 * 119.99782 * 34.16080 * 4 3 2 6 6 C 1.38811 * 119.99825 * 213.88551 * 4 3 2 7 7 N 1.31613 * 120.00072 * 22.97499 * 6 4 3 8 8 Si 1.86799 * 119.99793 * 202.97351 * 6 4 3 9 9 H 1.48497 * 109.47108 * 59.99747 * 8 6 4 10 10 H 1.48499 * 109.47285 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47204 * 299.99980 * 8 6 4 12 12 C 1.46497 * 120.00069 * 271.65776 * 3 2 1 13 13 C 1.52994 * 109.47202 * 269.99688 * 12 3 2 14 14 H 1.09006 * 109.47131 * 305.00710 * 13 12 3 15 15 O 1.42909 * 109.47009 * 65.00236 * 13 12 3 16 16 C 1.52996 * 109.47588 * 185.00173 * 13 12 3 17 17 C 1.52991 * 109.47523 * 175.00202 * 16 13 12 18 18 C 1.54266 * 110.03400 * 292.16625 * 17 16 13 19 19 C 1.54891 * 104.19672 * 217.10468 * 18 17 16 20 20 C 1.54885 * 102.74653 * 37.94436 * 19 18 17 21 21 C 1.53872 * 110.03308 * 175.00091 * 17 16 13 22 22 H 1.09003 * 109.47152 * 299.99983 * 1 2 3 23 23 H 1.09008 * 109.47135 * 59.99359 * 1 2 3 24 24 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47140 * 240.00803 * 2 1 3 26 26 H 1.08997 * 109.47315 * 120.00206 * 2 1 3 27 27 H 0.97006 * 120.00018 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47255 * 30.00364 * 12 3 2 29 29 H 1.09002 * 109.46620 * 149.99882 * 12 3 2 30 30 H 0.96698 * 113.99387 * 59.99809 * 15 13 12 31 31 H 1.08998 * 109.47004 * 295.00785 * 16 13 12 32 32 H 1.09000 * 109.46743 * 54.99715 * 16 13 12 33 33 H 1.09000 * 110.02100 * 53.60802 * 17 16 13 34 34 H 1.08996 * 110.48783 * 335.78656 * 18 17 16 35 35 H 1.09001 * 110.48682 * 98.42418 * 18 17 16 36 36 H 1.08997 * 110.75236 * 279.62586 * 19 18 17 37 37 H 1.09006 * 110.91110 * 156.33491 * 19 18 17 38 38 H 1.09005 * 110.47987 * 203.37813 * 20 19 18 39 39 H 1.08998 * 110.60212 * 80.79092 * 20 19 18 40 40 H 1.09007 * 110.03331 * 238.56765 * 21 17 16 41 41 H 1.09004 * 110.03543 * 359.95375 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2789 2.0153 1.1855 5 1 2.6637 1.4547 2.0245 6 6 2.0538 3.3797 1.3070 7 7 1.2020 3.9802 0.5032 8 14 2.9598 4.3633 2.6112 9 1 4.4232 4.2601 2.3813 10 1 2.5452 5.7871 2.5344 11 1 2.6307 3.8243 3.9553 12 6 2.2279 2.0842 -1.2682 13 6 3.6603 1.8483 -1.7513 14 1 4.3606 2.1434 -0.9699 15 8 3.8392 0.4629 -2.0529 16 6 3.9182 2.6813 -3.0085 17 6 5.3852 2.5428 -3.4200 18 6 6.2940 3.2188 -2.3726 19 6 7.4284 3.8591 -3.2106 20 6 6.6794 4.3682 -4.4671 21 6 5.6303 3.2736 -4.7517 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.0449 4.9337 0.5879 28 1 1.5266 1.7074 -2.0126 29 1 2.0646 3.1520 -1.1229 30 1 3.2473 0.1308 -2.7417 31 1 3.2790 2.3264 -3.8169 32 1 3.6958 3.7283 -2.8025 33 1 5.6473 1.4894 -3.5184 34 1 5.7431 3.9853 -1.8275 35 1 6.6999 2.4774 -1.6844 36 1 8.1759 3.1137 -3.4820 37 1 7.8890 4.6879 -2.6730 38 1 7.3668 4.4656 -5.3075 39 1 6.1909 5.3209 -4.2627 40 1 6.0122 2.5750 -5.4963 41 1 4.7039 3.7263 -5.1053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232135549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:45 Heat of formation + Delta-G solvation = -63.140469 kcal Electronic energy + Delta-G solvation = -18504.496694 eV Core-core repulsion = 15804.651892 eV Total energy + Delta-G solvation = -2699.844802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -38.59640 -36.78999 -34.86988 -31.77152 -31.38343 -29.26132 -28.51981 -27.30692 -24.69363 -23.22677 -21.26309 -20.43906 -19.91153 -19.22009 -16.80710 -15.84926 -15.12992 -15.09358 -14.62728 -14.43146 -13.78361 -13.64229 -13.19858 -13.14775 -12.82938 -12.26561 -11.89286 -11.56606 -11.16535 -11.05164 -10.98391 -10.87227 -10.83785 -10.64184 -10.56846 -10.47077 -10.29136 -10.12131 -10.08114 -9.91630 -9.86797 -9.64816 -9.01493 -8.44879 -6.50599 -5.72373 -3.25789 3.39144 3.44898 3.47970 4.52235 4.75896 4.83721 4.90763 5.17162 5.34758 5.47679 5.57074 5.61026 5.68650 5.78774 5.81891 5.88425 5.96547 6.01447 6.13320 6.21519 6.24106 6.29594 6.33657 6.46484 6.48331 6.49937 6.56419 6.60265 6.73432 6.79368 6.82144 7.06099 7.22357 7.33200 7.64664 7.86164 8.44685 8.55898 9.24562 9.89402 10.46623 11.26034 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.007915 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.151047 B = 3536.545286 C = 4476.417034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 N -0.579 5.579 4 C -0.249 4.249 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.116 3.884 13 C 0.085 3.915 14 H 0.094 0.906 15 O -0.563 6.563 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.253 0.747 28 H 0.021 0.979 29 H 0.106 0.894 30 H 0.355 0.645 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 -1.467 -9.506 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.299 5.299 4 C -0.379 4.379 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.208 1.208 12 C -0.011 4.011 13 C 0.024 3.976 14 H 0.112 0.888 15 O -0.367 6.367 16 C -0.179 4.179 17 C -0.104 4.104 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.159 4.159 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.123 0.877 30 H 0.200 0.800 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.433 -1.247 -9.019 11.753 hybrid contribution -0.103 0.682 0.222 0.724 sum 7.329 -0.566 -8.797 11.464 Atomic orbital electron populations 1.22324 1.00255 0.98189 1.01617 1.20857 0.91232 0.87494 0.98488 1.43701 1.74511 1.09770 1.01877 1.19073 1.36007 0.91411 0.91449 0.92249 1.25035 0.97572 0.98533 0.98313 1.69960 1.32874 1.10011 1.40578 0.86509 0.80227 0.79121 0.81872 1.20960 1.21694 1.20827 1.21625 0.90706 1.02286 0.86463 1.22853 1.01185 0.79420 0.94158 0.88786 1.86554 1.63206 1.26334 1.60576 1.22381 0.95115 1.01548 0.98837 1.21695 0.95372 0.99676 0.93687 1.22446 0.96081 0.99731 0.97483 1.22496 0.97691 0.99761 0.96356 1.22345 0.97605 0.98645 0.97583 1.22249 0.98773 0.97375 0.97545 0.92887 0.94092 0.95206 0.94363 0.94268 0.93663 0.96037 0.87719 0.79970 0.92653 0.91327 0.90837 0.91357 0.91741 0.91965 0.92046 0.92376 0.91837 0.92478 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 37.16 0.38 -3.00 16 2 C 0.15 3.19 6.22 -4.04 -0.03 3.16 16 3 N -0.58 -14.45 2.42 -173.24 -0.42 -14.86 16 4 C -0.25 -6.87 9.48 -15.06 -0.14 -7.01 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.24 16 6 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 7 N -0.89 -25.34 11.31 55.49 0.63 -24.71 16 8 Si 0.89 21.65 29.61 -169.99 -5.03 16.61 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.12 2.66 4.96 -4.05 -0.02 2.64 16 13 C 0.08 1.66 3.13 -26.74 -0.08 1.57 16 14 H 0.09 2.11 7.37 -51.93 -0.38 1.73 16 15 O -0.56 -10.45 11.59 -35.23 -0.41 -10.86 16 16 C -0.14 -2.27 4.02 -26.74 -0.11 -2.38 16 17 C -0.09 -1.24 2.88 -89.51 -0.26 -1.50 16 18 C -0.12 -1.77 5.46 -25.07 -0.14 -1.91 16 19 C -0.13 -1.54 6.91 -24.74 -0.17 -1.71 16 20 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 16 21 C -0.12 -1.50 6.46 -25.61 -0.17 -1.67 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.77 7.08 -51.93 -0.37 0.40 16 26 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.11 2.72 5.31 -51.93 -0.28 2.45 16 30 H 0.36 5.40 9.04 45.56 0.41 5.81 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 33 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 34 H 0.07 1.10 7.76 -51.93 -0.40 0.70 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -28.77 321.45 -8.22 -36.99 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.85 Total: 5.36 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.99 Total: -13.36 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.21 Total: -39.58 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.41 Total: -10.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.77 -8.22 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.153 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds