Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.47076 * 2 1 4 4 C 1.36939 * 119.99574 * 91.65689 * 3 2 1 5 5 H 1.07998 * 119.99782 * 34.16080 * 4 3 2 6 6 C 1.38811 * 119.99825 * 213.88551 * 4 3 2 7 7 N 1.31613 * 120.00072 * 22.97499 * 6 4 3 8 8 Si 1.86799 * 119.99793 * 202.97351 * 6 4 3 9 9 H 1.48497 * 109.47108 * 59.99747 * 8 6 4 10 10 H 1.48499 * 109.47285 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47204 * 299.99980 * 8 6 4 12 12 C 1.46497 * 120.00069 * 271.65776 * 3 2 1 13 13 C 1.52994 * 109.47202 * 269.99688 * 12 3 2 14 14 H 1.09006 * 109.47131 * 305.00710 * 13 12 3 15 15 O 1.42909 * 109.47009 * 65.00236 * 13 12 3 16 16 C 1.52996 * 109.47588 * 185.00173 * 13 12 3 17 17 C 1.52991 * 109.47523 * 175.00202 * 16 13 12 18 18 C 1.54266 * 110.03400 * 292.16625 * 17 16 13 19 19 C 1.54891 * 104.19672 * 217.10468 * 18 17 16 20 20 C 1.54885 * 102.74653 * 37.94436 * 19 18 17 21 21 C 1.53872 * 110.03308 * 175.00091 * 17 16 13 22 22 H 1.09003 * 109.47152 * 299.99983 * 1 2 3 23 23 H 1.09008 * 109.47135 * 59.99359 * 1 2 3 24 24 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47140 * 240.00803 * 2 1 3 26 26 H 1.08997 * 109.47315 * 120.00206 * 2 1 3 27 27 H 0.97006 * 120.00018 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47255 * 30.00364 * 12 3 2 29 29 H 1.09002 * 109.46620 * 149.99882 * 12 3 2 30 30 H 0.96698 * 113.99387 * 59.99809 * 15 13 12 31 31 H 1.08998 * 109.47004 * 295.00785 * 16 13 12 32 32 H 1.09000 * 109.46743 * 54.99715 * 16 13 12 33 33 H 1.09000 * 110.02100 * 53.60802 * 17 16 13 34 34 H 1.08996 * 110.48783 * 335.78656 * 18 17 16 35 35 H 1.09001 * 110.48682 * 98.42418 * 18 17 16 36 36 H 1.08997 * 110.75236 * 279.62586 * 19 18 17 37 37 H 1.09006 * 110.91110 * 156.33491 * 19 18 17 38 38 H 1.09005 * 110.47987 * 203.37813 * 20 19 18 39 39 H 1.08998 * 110.60212 * 80.79092 * 20 19 18 40 40 H 1.09007 * 110.03331 * 238.56765 * 21 17 16 41 41 H 1.09004 * 110.03543 * 359.95375 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2789 2.0153 1.1855 5 1 2.6637 1.4547 2.0245 6 6 2.0538 3.3797 1.3070 7 7 1.2020 3.9802 0.5032 8 14 2.9598 4.3633 2.6112 9 1 4.4232 4.2601 2.3813 10 1 2.5452 5.7871 2.5344 11 1 2.6307 3.8243 3.9553 12 6 2.2279 2.0842 -1.2682 13 6 3.6603 1.8483 -1.7513 14 1 4.3606 2.1434 -0.9699 15 8 3.8392 0.4629 -2.0529 16 6 3.9182 2.6813 -3.0085 17 6 5.3852 2.5428 -3.4200 18 6 6.2940 3.2188 -2.3726 19 6 7.4284 3.8591 -3.2106 20 6 6.6794 4.3682 -4.4671 21 6 5.6303 3.2736 -4.7517 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.0449 4.9337 0.5879 28 1 1.5266 1.7074 -2.0126 29 1 2.0646 3.1520 -1.1229 30 1 3.2473 0.1308 -2.7417 31 1 3.2790 2.3264 -3.8169 32 1 3.6958 3.7283 -2.8025 33 1 5.6473 1.4894 -3.5184 34 1 5.7431 3.9853 -1.8275 35 1 6.6999 2.4774 -1.6844 36 1 8.1759 3.1137 -3.4820 37 1 7.8890 4.6879 -2.6730 38 1 7.3668 4.4656 -5.3075 39 1 6.1909 5.3209 -4.2627 40 1 6.0122 2.5750 -5.4963 41 1 4.7039 3.7263 -5.1053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232135549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -79.696650 kcal Electronic energy + Delta-G solvation = -18505.214624 eV Core-core repulsion = 15804.651892 eV Total energy + Delta-G solvation = -2700.562732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.88782 -38.29435 -36.59940 -33.75009 -32.76479 -30.94573 -29.58385 -28.95283 -26.39960 -24.91722 -22.79435 -21.87861 -21.34748 -20.40908 -18.73322 -17.15895 -16.90822 -16.58232 -16.16339 -15.75793 -15.54093 -15.40069 -14.81327 -14.18789 -14.09436 -14.07507 -13.60290 -13.11094 -12.94448 -12.79539 -12.47330 -12.32140 -12.10918 -12.07582 -11.94381 -11.91587 -11.81143 -11.70498 -11.52151 -11.48441 -11.29095 -11.20550 -10.63709 -10.47375 -8.52719 -7.78970 -5.37082 1.43547 1.46116 1.52710 2.51068 3.21962 3.54735 3.72476 3.78684 3.89011 3.92891 4.31538 4.38362 4.46770 4.51209 4.58643 4.65082 4.72047 4.77323 4.80878 4.88361 4.91924 4.96003 5.00783 5.09038 5.09482 5.14258 5.19393 5.29951 5.30635 5.38472 5.49988 5.56112 5.56870 5.62042 5.66896 5.80774 6.46837 7.06357 7.20070 7.91865 8.41815 9.14200 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.007915 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.151047 B = 3536.545286 C = 4476.417034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 N -0.595 5.595 4 C -0.262 4.262 5 H 0.049 0.951 6 C -0.037 4.037 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.278 1.278 12 C 0.118 3.882 13 C 0.104 3.896 14 H 0.060 0.940 15 O -0.568 6.568 16 C -0.130 4.130 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.118 4.118 22 H 0.023 0.977 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.251 0.749 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.374 0.626 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -1.978 -10.961 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.316 5.316 4 C -0.393 4.393 5 H 0.067 0.933 6 C -0.234 4.234 7 N -0.559 5.559 8 Si 0.777 3.223 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.204 1.204 12 C -0.009 4.009 13 C 0.043 3.957 14 H 0.078 0.922 15 O -0.374 6.374 16 C -0.168 4.168 17 C -0.100 4.100 18 C -0.163 4.163 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.156 4.156 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.301 -1.781 -10.489 13.494 hybrid contribution -0.405 0.744 0.678 1.085 sum 7.896 -1.037 -9.811 12.636 Atomic orbital electron populations 1.22165 0.99131 1.00026 0.99788 1.20989 0.92077 0.86111 0.99285 1.43935 1.75092 1.10786 1.01750 1.19227 1.35864 0.91972 0.92241 0.93306 1.25622 0.98248 0.99213 1.00328 1.70078 1.33939 1.09865 1.42019 0.85636 0.79045 0.77738 0.79916 1.20787 1.21603 1.20357 1.21587 0.92913 1.00304 0.86055 1.22366 0.97892 0.80621 0.94846 0.92159 1.86510 1.63789 1.25563 1.61532 1.22256 0.97052 0.99955 0.97586 1.21649 0.93658 0.99825 0.94873 1.22447 0.97139 0.99024 0.97726 1.22488 0.97015 1.00086 0.96251 1.22355 0.97658 0.98110 0.97859 1.22223 0.99305 0.97707 0.96321 0.95801 0.94702 0.91475 0.92136 0.94787 0.93996 0.95148 0.90795 0.77884 0.90795 0.92687 0.91084 0.93539 0.93119 0.90774 0.91501 0.90189 0.92195 0.90801 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 10.24 71.98 0.74 -5.34 16 2 C 0.14 6.05 6.22 86.38 0.54 6.59 16 3 N -0.60 -29.95 2.42 -702.00 -1.70 -31.65 16 4 C -0.26 -14.72 9.48 84.03 0.80 -13.93 16 5 H 0.05 2.79 7.93 -2.91 -0.02 2.76 16 6 C -0.04 -2.08 4.95 84.86 0.42 -1.66 16 7 N -0.91 -53.13 11.31 21.65 0.24 -52.88 16 8 Si 0.95 45.26 29.61 68.60 2.03 47.29 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.12 5.44 4.96 86.38 0.43 5.87 16 13 C 0.10 4.07 3.13 30.59 0.10 4.16 16 14 H 0.06 2.79 7.37 -2.38 -0.02 2.77 16 15 O -0.57 -20.32 11.59 -148.98 -1.73 -22.04 16 16 C -0.13 -4.13 4.02 30.59 0.12 -4.00 16 17 C -0.08 -2.25 2.88 -10.07 -0.03 -2.27 16 18 C -0.13 -3.69 5.46 31.67 0.17 -3.51 16 19 C -0.12 -2.75 6.91 31.88 0.22 -2.53 16 20 C -0.12 -2.52 6.83 31.67 0.22 -2.31 16 21 C -0.12 -2.60 6.46 31.32 0.20 -2.40 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 2.31 7.08 -2.39 -0.02 2.29 16 26 H 0.03 1.47 8.03 -2.39 -0.02 1.46 16 27 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.07 3.95 5.31 -2.39 -0.01 3.94 16 30 H 0.37 10.43 9.04 -74.06 -0.67 9.76 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 33 H 0.07 2.01 7.69 -2.39 -0.02 1.99 16 34 H 0.05 1.54 7.76 -2.39 -0.02 1.52 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.06 1.41 7.67 -2.38 -0.02 1.39 16 Total: -1.00 -62.03 321.45 3.08 -58.95 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.30 Total: 21.67 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 3.92 Total: -21.33 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.45 Total: -84.53 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.73 Total: -22.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -62.03 3.08 -58.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.747 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds