Wall clock time and date at job start Mon Mar 30 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86795 * 120.00077 * 2 1 4 4 H 1.48505 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47338 * 299.99681 * 3 2 1 6 6 H 1.48504 * 109.47369 * 60.00009 * 3 2 1 7 7 C 1.40025 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.41235 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.33747 * 119.79786 * 0.26565 * 9 7 2 11 11 C 1.31931 * 121.42705 * 180.26391 * 10 9 7 12 12 N 1.38845 * 119.56971 * 179.75370 * 11 10 9 13 13 C 1.39828 * 120.86334 * 359.72677 * 11 10 9 14 14 C 1.38529 * 119.51057 * 359.97438 * 13 11 10 15 15 C 1.38536 * 118.67462 * 0.02562 * 14 13 11 16 16 Br 1.89100 * 120.44027 * 179.97438 * 15 14 13 17 17 H 0.97006 * 120.00147 * 359.97438 * 1 2 3 18 18 H 0.96994 * 119.99862 * 179.97438 * 12 11 10 19 19 H 0.97003 * 119.99692 * 359.96852 * 12 11 10 20 20 H 1.08001 * 120.24555 * 180.02562 * 13 11 10 21 21 H 1.08004 * 120.66524 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2124 6 1 1.8828 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3014 -2.4358 0.0005 10 7 -0.0361 -2.4311 -0.0054 11 6 -0.7280 -3.5543 -0.0004 12 7 -2.1156 -3.5044 -0.0016 13 6 -0.0823 -4.7946 0.0056 14 6 1.3022 -4.8430 0.0057 15 6 2.0091 -3.6516 0.0005 16 35 3.9000 -3.6595 0.0011 17 1 -0.4851 0.8401 0.0004 18 1 -2.6304 -4.3264 0.0017 19 1 -2.5700 -2.6474 -0.0057 20 1 -0.6586 -5.7080 0.0092 21 1 1.8202 -5.7908 0.0107 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238574193.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:34 Heat of formation + Delta-G solvation = 30.459960 kcal Electronic energy + Delta-G solvation = -10201.560764 eV Core-core repulsion = 8123.297971 eV Total energy + Delta-G solvation = -2078.262793 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.26278 -34.24716 -32.99695 -30.65007 -29.82630 -27.58328 -25.20095 -21.67389 -20.73301 -17.69864 -16.24000 -15.43255 -14.72058 -14.25859 -13.56750 -12.93722 -12.75186 -12.05685 -11.31349 -11.09355 -10.81181 -10.70496 -10.44227 -10.13905 -9.55423 -8.82289 -8.71767 -8.12174 -7.65054 -6.63753 -6.47686 -4.63059 2.75224 2.94933 3.08611 3.14848 3.21414 3.28391 3.92867 4.72723 4.76860 5.84338 6.05845 6.42726 6.64634 6.82218 7.12013 7.29340 7.51244 7.65081 8.13284 8.33887 8.56227 8.69203 8.92246 10.08490 10.24867 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.016063 C = 0.008966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.201159 B = 1742.764329 C = 3122.120485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.100 0.900 9 C 0.307 3.693 10 N -0.527 5.527 11 C 0.422 3.578 12 N -0.865 5.865 13 C -0.366 4.366 14 C 0.007 3.993 15 C -0.281 4.281 16 Br -0.107 7.107 17 H 0.272 0.728 18 H 0.391 0.609 19 H 0.394 0.606 20 H 0.096 0.904 21 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 -3.241 0.013 3.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.447 4.447 8 H 0.118 0.882 9 C 0.180 3.820 10 N -0.250 5.250 11 C 0.177 3.823 12 N -0.409 5.409 13 C -0.393 4.393 14 C -0.019 4.019 15 C -0.364 4.364 16 Br -0.025 7.025 17 H 0.083 0.917 18 H 0.218 0.782 19 H 0.223 0.777 20 H 0.115 0.885 21 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.887 -2.310 0.006 2.983 hybrid contribution -0.142 -0.195 0.006 0.242 sum 1.744 -2.505 0.012 3.053 Atomic orbital electron populations 1.70163 1.07361 1.27738 1.27499 1.26143 0.94885 1.01348 0.93373 0.86258 0.81255 0.80833 0.78567 1.17969 1.19758 1.19761 1.19983 0.95303 0.88996 1.40379 0.88247 1.17995 0.86697 0.90675 0.86655 1.68437 1.06593 1.23915 1.26011 1.18686 0.85206 0.90186 0.88196 1.42056 1.03352 1.09879 1.85632 1.20566 0.93948 0.95804 1.28940 1.20512 0.93154 0.95391 0.92863 1.22106 0.86686 0.96863 1.30717 1.96208 1.08518 1.99098 1.98633 0.91687 0.78168 0.77732 0.88545 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.32 11.45 55.55 0.64 -17.69 14 2 C 0.07 1.74 5.50 -17.34 -0.10 1.64 14 3 Si 0.91 18.55 29.56 -169.99 -5.02 13.53 14 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 7 C -0.42 -11.10 8.79 -37.77 -0.33 -11.43 14 8 H 0.10 2.55 6.35 -52.49 -0.33 2.22 14 9 C 0.31 8.39 6.55 -84.97 -0.56 7.83 14 10 N -0.53 -14.26 7.88 -10.30 -0.08 -14.34 14 11 C 0.42 10.05 7.74 -155.31 -1.20 8.85 14 12 N -0.86 -16.30 9.07 31.15 0.28 -16.02 14 13 C -0.37 -8.21 9.95 -38.88 -0.39 -8.60 14 14 C 0.01 0.16 9.91 -39.36 -0.39 -0.23 14 15 C -0.28 -6.98 6.30 -38.55 -0.24 -7.22 14 16 Br -0.11 -2.31 31.90 -68.01 -2.17 -4.48 14 17 H 0.27 6.35 8.29 -40.82 -0.34 6.01 14 18 H 0.39 5.91 8.82 -40.82 -0.36 5.55 14 19 H 0.39 7.26 8.95 -40.82 -0.37 6.90 14 20 H 0.10 1.88 8.06 -52.49 -0.42 1.46 14 21 H 0.10 2.08 8.06 -52.48 -0.42 1.65 14 LS Contribution 214.46 15.07 3.23 3.23 Total: -1.00 -28.68 214.46 -7.37 -36.05 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -1.04 Total: 8.87 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.21 Total: -9.16 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.84 Total: -48.04 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 35 Polarization: -2.31 SS G_CDS: -2.17 Total: -4.48 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -28.68 -7.37 -36.05 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238574193.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.509 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds