Wall clock time and date at job start Mon Mar 30 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29472 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47118 * 269.99818 * 3 2 1 5 5 H 1.48497 * 109.47026 * 29.99509 * 3 2 1 6 6 H 1.48496 * 109.47100 * 149.99604 * 3 2 1 7 7 C 1.46695 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.38072 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.39477 * 125.25196 * 179.97438 * 9 7 2 11 11 C 1.37192 * 113.08714 * 179.97438 * 10 9 7 12 12 C 1.47584 * 122.78139 * 179.97438 * 11 10 9 13 13 N 1.34782 * 119.99850 * 6.46783 * 12 11 10 14 14 O 1.21582 * 120.00383 * 186.47276 * 12 11 10 15 15 C 1.38045 * 114.44650 * 0.22551 * 11 10 9 16 16 N 1.48026 * 124.50346 * 179.73519 * 15 11 10 17 17 O 1.31698 * 119.99830 * 42.16279 * 16 15 11 18 18 O 1.31692 * 120.00001 * 222.16620 * 16 15 11 19 19 S 1.70524 * 111.00020 * 359.64481 * 15 11 10 20 20 H 0.97000 * 120.00784 * 0.02562 * 1 2 3 21 21 H 1.07997 * 123.46027 * 359.93905 * 10 9 7 22 22 H 0.97005 * 119.99422 * 0.02562 * 13 12 11 23 23 H 0.96998 * 120.00375 * 179.73300 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6178 0.0000 4 1 2.4762 2.0465 -1.4001 5 1 1.4260 2.6527 0.6999 6 1 3.5262 1.4403 0.7001 7 6 2.0283 -1.2704 0.0006 8 1 3.1083 -1.2703 0.0010 9 6 1.3380 -2.4661 0.0006 10 6 1.9219 -3.7328 0.0006 11 6 1.0009 -4.7497 0.0011 12 6 1.3843 -6.1749 0.0007 13 7 2.6794 -6.5244 0.1312 14 8 0.5318 -7.0337 -0.1175 15 6 -0.3140 -4.3296 -0.0034 16 7 -1.4840 -5.2364 -0.0094 17 8 -1.4895 -6.3092 0.7545 18 8 -2.5193 -4.9705 -0.7786 19 16 -0.4117 -2.6271 0.0014 20 1 -0.4851 0.8400 -0.0004 21 1 2.9894 -3.8963 -0.0004 22 1 3.3595 -5.8391 0.2258 23 1 2.9310 -7.4611 0.1348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238604350.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:15 Heat of formation + Delta-G solvation = -19.904699 kcal Electronic energy + Delta-G solvation = -14778.593370 eV Core-core repulsion = 11914.617993 eV Total energy + Delta-G solvation = -2863.975376 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.019 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10703 -37.03457 -36.13220 -34.59217 -33.06218 -32.65084 -30.23927 -27.12327 -24.60311 -22.77619 -21.05481 -19.01676 -18.56181 -17.17557 -16.91680 -16.28240 -15.89605 -15.08242 -14.61127 -14.22465 -13.92178 -13.60946 -13.18187 -12.34647 -12.32543 -12.07429 -11.53609 -11.23041 -11.01137 -10.25906 -9.88660 -9.73999 -9.64837 -9.37493 -9.22790 -8.99726 -8.44339 -7.95804 -7.60467 -5.33920 0.85966 2.05434 2.35718 2.45106 2.45576 2.56618 2.88684 3.09288 3.26595 3.32036 3.83143 4.16401 4.28347 5.49754 5.78222 6.02284 6.43274 6.57716 6.85508 7.05471 7.20832 7.30549 7.43517 7.56376 7.81727 8.39124 8.82274 8.83470 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.008288 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.793888 B = 3377.514044 C = 4133.963638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.039 3.961 3 Si 0.953 3.047 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.247 1.247 7 C -0.299 4.299 8 H 0.121 0.879 9 C -0.001 4.001 10 C -0.273 4.273 11 C -0.024 4.024 12 C 0.561 3.439 13 N -0.854 5.854 14 O -0.516 6.516 15 C -0.313 4.313 16 N 0.063 4.937 17 O -0.204 6.204 18 O -0.288 6.288 19 S 0.262 5.738 20 H 0.321 0.679 21 H 0.132 0.868 22 H 0.399 0.601 23 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 6.492 0.778 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.170 1.170 7 C -0.338 4.338 8 H 0.138 0.862 9 C -0.123 4.123 10 C -0.297 4.297 11 C -0.040 4.040 12 C 0.345 3.655 13 N -0.419 5.419 14 O -0.390 6.390 15 C -0.522 4.522 16 N 0.517 4.483 17 O -0.392 6.392 18 O -0.453 6.453 19 S 0.523 5.477 20 H 0.136 0.864 21 H 0.149 0.851 22 H 0.228 0.772 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.428 7.318 0.607 10.445 hybrid contribution 1.605 -0.837 -0.002 1.810 sum 9.033 6.481 0.605 11.134 Atomic orbital electron populations 1.68119 1.09223 1.33919 1.21972 1.28103 0.95164 1.04050 0.92172 0.85499 0.80324 0.76226 0.80692 1.17881 1.18752 1.17045 1.20808 0.96368 0.87655 1.28940 0.86167 1.21969 0.96418 0.96044 0.97853 1.20061 0.97941 0.89881 1.21827 1.18435 0.91041 0.93171 1.01354 1.18272 0.82453 0.88747 0.76039 1.43689 1.08278 1.11444 1.78495 1.90922 1.49179 1.51567 1.47378 1.24865 0.85864 0.98236 1.43237 1.48985 1.01371 1.00253 0.97650 1.96152 1.88808 1.15980 1.38269 1.96126 1.26592 1.82295 1.40262 1.84031 1.02152 0.87000 1.74490 0.86364 0.85071 0.77161 0.77253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.23 10.75 56.00 0.60 -12.62 14 2 C 0.04 0.66 5.67 -15.13 -0.09 0.58 14 3 Si 0.95 12.33 29.65 -169.99 -5.04 7.29 14 4 H -0.25 -3.32 7.11 56.52 0.40 -2.92 14 5 H -0.26 -3.39 7.11 56.52 0.40 -2.99 14 6 H -0.25 -3.12 7.11 56.52 0.40 -2.72 14 7 C -0.30 -5.57 9.50 -36.23 -0.34 -5.92 14 8 H 0.12 1.91 7.94 -52.49 -0.42 1.50 14 9 C 0.00 -0.02 6.16 -39.18 -0.24 -0.26 14 10 C -0.27 -5.59 9.71 -39.50 -0.38 -5.97 14 11 C -0.02 -0.56 5.81 -106.54 -0.62 -1.18 14 12 C 0.56 12.54 8.00 -12.45 -0.10 12.44 14 13 N -0.85 -13.24 8.84 30.47 0.27 -12.97 14 14 O -0.52 -13.73 14.31 -18.65 -0.27 -14.00 14 15 C -0.31 -8.31 7.10 -9.70 -0.07 -8.38 14 16 N 0.06 1.84 4.59 33.28 0.15 1.99 14 17 O -0.20 -6.12 16.93 -39.80 -0.67 -6.80 14 18 O -0.29 -8.56 19.97 -31.56 -0.63 -9.19 14 19 S 0.26 6.20 20.07 -107.50 -2.16 4.05 14 20 H 0.32 5.12 8.27 -40.82 -0.34 4.78 14 21 H 0.13 2.15 6.93 -52.49 -0.36 1.78 14 22 H 0.40 4.97 7.28 -40.82 -0.30 4.67 14 23 H 0.40 5.20 8.93 -40.82 -0.36 4.83 14 LS Contribution 237.72 15.07 3.58 3.58 Total: -1.00 -31.84 237.72 -6.58 -38.42 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -0.57 Total: 8.94 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.84 Total: -8.68 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 1.02 Total: -23.61 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.57 Total: -29.99 kcal Atomic # 14 Polarization: 12.33 SS G_CDS: -5.04 Total: 7.29 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -2.16 Total: 4.05 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.84 -6.58 -38.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238604350.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.512 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds