Wall clock time and date at job start Mon Mar 30 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29472 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47118 * 269.99818 * 3 2 1 5 5 H 1.48497 * 109.47026 * 29.99509 * 3 2 1 6 6 H 1.48496 * 109.47100 * 149.99604 * 3 2 1 7 7 C 1.46695 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.38072 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.39477 * 125.25196 * 179.97438 * 9 7 2 11 11 C 1.37192 * 113.08714 * 179.97438 * 10 9 7 12 12 C 1.47584 * 122.78139 * 179.97438 * 11 10 9 13 13 N 1.34782 * 119.99850 * 6.46783 * 12 11 10 14 14 O 1.21582 * 120.00383 * 186.47276 * 12 11 10 15 15 C 1.38045 * 114.44650 * 0.22551 * 11 10 9 16 16 N 1.48026 * 124.50346 * 179.73519 * 15 11 10 17 17 O 1.31698 * 119.99830 * 42.16279 * 16 15 11 18 18 O 1.31692 * 120.00001 * 222.16620 * 16 15 11 19 19 S 1.70524 * 111.00020 * 359.64481 * 15 11 10 20 20 H 0.97000 * 120.00784 * 0.02562 * 1 2 3 21 21 H 1.07997 * 123.46027 * 359.93905 * 10 9 7 22 22 H 0.97005 * 119.99422 * 0.02562 * 13 12 11 23 23 H 0.96998 * 120.00375 * 179.73300 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6178 0.0000 4 1 2.4762 2.0465 -1.4001 5 1 1.4260 2.6527 0.6999 6 1 3.5262 1.4403 0.7001 7 6 2.0283 -1.2704 0.0006 8 1 3.1083 -1.2703 0.0010 9 6 1.3380 -2.4661 0.0006 10 6 1.9219 -3.7328 0.0006 11 6 1.0009 -4.7497 0.0011 12 6 1.3843 -6.1749 0.0007 13 7 2.6794 -6.5244 0.1312 14 8 0.5318 -7.0337 -0.1175 15 6 -0.3140 -4.3296 -0.0034 16 7 -1.4840 -5.2364 -0.0094 17 8 -1.4895 -6.3092 0.7545 18 8 -2.5193 -4.9705 -0.7786 19 16 -0.4117 -2.6271 0.0014 20 1 -0.4851 0.8400 -0.0004 21 1 2.9894 -3.8963 -0.0004 22 1 3.3595 -5.8391 0.2258 23 1 2.9310 -7.4611 0.1348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238604350.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:15 Heat of formation + Delta-G solvation = -44.973480 kcal Electronic energy + Delta-G solvation = -14779.680433 eV Core-core repulsion = 11914.617993 eV Total energy + Delta-G solvation = -2865.062440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.019 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78696 -38.78274 -37.88561 -36.25368 -34.63432 -34.43899 -31.98953 -28.93215 -26.28017 -24.57523 -22.71049 -20.62498 -20.25625 -18.80106 -18.63198 -17.94236 -17.35166 -16.69889 -16.31790 -15.96370 -15.63311 -15.10685 -14.60355 -13.92007 -13.85336 -13.69519 -12.91854 -12.91104 -12.00593 -11.74778 -11.58508 -11.54394 -11.42569 -11.33047 -10.89748 -10.66572 -10.16849 -9.45421 -9.38951 -7.10119 -1.08540 0.33988 0.72054 0.98597 1.34360 1.47985 1.65290 1.67675 1.71009 2.06284 2.29825 2.62314 2.69454 3.92317 4.23032 4.36461 4.76259 4.81805 5.17494 5.43058 5.58789 5.67040 5.81394 5.90953 6.43797 6.55027 7.35690 7.36637 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.008288 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.793888 B = 3377.514044 C = 4133.963638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C -0.005 4.005 3 Si 1.032 2.968 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.224 1.224 7 C -0.194 4.194 8 H 0.181 0.819 9 C -0.059 4.059 10 C -0.176 4.176 11 C -0.073 4.073 12 C 0.552 3.448 13 N -0.816 5.816 14 O -0.570 6.570 15 C -0.329 4.329 16 N 0.075 4.925 17 O -0.325 6.325 18 O -0.401 6.401 19 S 0.193 5.807 20 H 0.340 0.660 21 H 0.194 0.806 22 H 0.420 0.580 23 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 12.316 0.895 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.239 4.239 3 Si 0.846 3.154 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.146 1.146 7 C -0.233 4.233 8 H 0.198 0.802 9 C -0.181 4.181 10 C -0.201 4.201 11 C -0.086 4.086 12 C 0.336 3.664 13 N -0.383 5.383 14 O -0.449 6.449 15 C -0.549 4.549 16 N 0.484 4.516 17 O -0.479 6.479 18 O -0.537 6.537 19 S 0.449 5.551 20 H 0.157 0.843 21 H 0.211 0.789 22 H 0.252 0.748 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 14.390 12.798 0.751 19.273 hybrid contribution 0.332 -1.481 -0.049 1.518 sum 14.723 11.317 0.702 18.583 Atomic orbital electron populations 1.68184 1.11358 1.36532 1.17042 1.29510 0.95743 1.07216 0.91389 0.84369 0.79425 0.70642 0.80934 1.17512 1.19028 1.14566 1.22278 0.99331 0.86985 1.14678 0.80212 1.22349 0.95031 0.97707 1.02987 1.20916 1.00037 0.88329 1.10807 1.18925 0.90838 0.94830 1.03991 1.18350 0.83901 0.88074 0.76118 1.43281 1.06018 1.13064 1.75918 1.90930 1.51297 1.52676 1.50036 1.25336 0.86253 0.98718 1.44603 1.48962 1.02285 1.01321 0.99065 1.96044 1.89978 1.20136 1.41716 1.96003 1.29896 1.84115 1.43637 1.84073 1.05208 0.86877 1.78986 0.84317 0.78864 0.74765 0.75501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -22.88 10.75 23.25 0.25 -22.63 14 2 C -0.01 -0.14 5.67 87.25 0.49 0.35 14 3 Si 1.03 16.85 29.65 68.60 2.03 18.88 14 4 H -0.25 -4.18 7.11 99.48 0.71 -3.47 14 5 H -0.27 -4.64 7.11 99.48 0.71 -3.94 14 6 H -0.22 -3.02 7.11 99.48 0.71 -2.31 14 7 C -0.19 -5.35 9.50 24.44 0.23 -5.12 14 8 H 0.18 3.18 7.94 -2.91 -0.02 3.16 14 9 C -0.06 -2.20 6.16 22.53 0.14 -2.06 14 10 C -0.18 -6.17 9.71 22.32 0.22 -5.96 14 11 C -0.07 -3.44 5.81 -21.10 -0.12 -3.56 14 12 C 0.55 25.10 8.00 86.71 0.69 25.79 14 13 N -0.82 -23.03 8.84 -175.78 -1.55 -24.58 14 14 O -0.57 -33.03 14.31 18.92 0.27 -32.76 14 15 C -0.33 -18.66 7.10 81.88 0.58 -18.08 14 16 N 0.08 5.06 4.59 -48.61 -0.22 4.84 14 17 O -0.32 -22.74 16.93 11.39 0.19 -22.55 14 18 O -0.40 -27.94 19.97 3.53 0.07 -27.87 14 19 S 0.19 9.24 20.07 -56.49 -1.13 8.10 14 20 H 0.34 9.17 8.27 -92.71 -0.77 8.41 14 21 H 0.19 4.30 6.93 -2.91 -0.02 4.28 14 22 H 0.42 7.98 7.28 -92.70 -0.67 7.30 14 23 H 0.41 9.85 8.93 -92.71 -0.83 9.02 14 Total: -1.00 -86.71 237.72 1.95 -84.75 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.19 Total: 22.45 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 2.23 Total: -8.64 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -1.53 Total: -42.37 kcal Atomic # 8 Polarization: -83.72 SS G_CDS: 0.53 Total: -83.18 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: 2.03 Total: 18.88 kcal Atomic # 16 Polarization: 9.24 SS G_CDS: -1.13 Total: 8.10 kcal Total: -86.71 1.95 -84.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238604350.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.781 kcal (2) G-P(sol) polarization free energy of solvation -86.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds