Wall clock time and date at job start Mon Mar 30 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48500 * 109.47253 * 240.00071 * 3 2 1 5 5 H 1.48504 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46798 * 120.00125 * 3 2 1 7 7 C 1.39871 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99649 * 197.63258 * 7 2 1 9 9 C 1.41187 * 120.00371 * 17.63753 * 7 2 1 10 10 C 1.40793 * 120.56542 * 203.64342 * 9 7 2 11 11 N 1.31473 * 120.38345 * 179.97438 * 10 9 7 12 12 C 1.32752 * 121.73930 * 359.97438 * 11 10 9 13 13 N 1.38394 * 119.43350 * 179.97438 * 12 11 10 14 14 C 1.39767 * 121.12640 * 0.02562 * 12 11 10 15 15 Br 1.89103 * 120.25554 * 179.69883 * 14 12 11 16 16 C 1.36652 * 119.47902 * 359.97438 * 14 12 11 17 17 H 0.96998 * 119.99703 * 0.02562 * 1 2 3 18 18 H 1.07994 * 119.81049 * 359.97438 * 10 9 7 19 19 H 0.97002 * 119.99796 * 180.02562 * 13 12 11 20 20 H 0.97001 * 120.00380 * 0.03263 * 13 12 11 21 21 H 1.08000 * 120.79545 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0503 -1.2335 0.2828 9 6 1.3521 -2.4052 -0.3715 10 6 1.8309 -3.6528 0.0716 11 7 1.2168 -4.7622 -0.2756 12 6 0.1360 -4.7503 -1.0464 13 7 -0.4724 -5.9469 -1.3831 14 6 -0.3972 -3.5501 -1.5245 15 35 -1.9329 -3.5623 -2.6279 16 6 0.2032 -2.3682 -1.1929 17 1 -0.4849 0.8401 -0.0004 18 1 2.7077 -3.6988 0.7004 19 1 -1.2623 -5.9477 -1.9462 20 1 -0.1090 -6.7847 -1.0561 21 1 -0.1906 -1.4284 -1.5509 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238687125.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:40 Heat of formation + Delta-G solvation = 7.139580 kcal Electronic energy + Delta-G solvation = -10124.592153 eV Core-core repulsion = 8045.318113 eV Total energy + Delta-G solvation = -2079.274041 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.44882 -36.39172 -34.68146 -33.37498 -31.30796 -29.90304 -26.72090 -23.76584 -22.88429 -19.19808 -18.09324 -18.03177 -16.78817 -15.62272 -15.36757 -14.94325 -14.61523 -13.79763 -13.61059 -13.15692 -12.82033 -12.34964 -12.00958 -11.85930 -11.50819 -11.08206 -10.81370 -10.13552 -9.94970 -8.79485 -8.53810 -6.19281 0.58805 0.87818 0.99701 1.43720 1.53746 1.57717 2.24123 2.73430 3.04226 3.63100 4.20785 4.57907 4.75934 5.08407 5.27408 5.33016 5.76892 5.81279 6.38539 6.65846 6.74424 6.86074 7.01320 7.73620 8.34757 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.036202 B = 0.010001 C = 0.008009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.261225 B = 2799.151014 C = 3495.406154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.483 4.483 8 H 0.087 0.913 9 C 0.001 3.999 10 C 0.018 3.982 11 N -0.524 5.524 12 C 0.305 3.695 13 N -0.853 5.853 14 C -0.177 4.177 15 Br -0.059 7.059 16 C -0.083 4.083 17 H 0.289 0.711 18 H 0.150 0.850 19 H 0.405 0.595 20 H 0.402 0.598 21 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -3.089 -4.405 6.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.105 0.895 9 C -0.005 4.005 10 C -0.141 4.141 11 N -0.241 5.241 12 C 0.067 3.933 13 N -0.403 5.403 14 C -0.262 4.262 15 Br 0.024 6.976 16 C -0.112 4.112 17 H 0.100 0.900 18 H 0.167 0.833 19 H 0.237 0.763 20 H 0.231 0.769 21 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.687 -3.672 -4.483 6.869 hybrid contribution 0.047 1.208 -0.015 1.209 sum -3.640 -2.464 -4.498 6.289 Atomic orbital electron populations 1.69842 1.08957 1.30766 1.36218 1.26714 0.95440 1.04475 0.91332 0.85229 0.78686 0.75636 0.80082 1.18553 1.19646 1.18248 1.19566 0.98535 0.91566 1.41725 0.89505 1.18646 0.93778 0.94765 0.93330 1.22660 1.01793 0.87045 1.02574 1.66829 1.08986 1.32457 1.15793 1.17775 0.92249 0.86172 0.97094 1.41655 1.34343 1.04125 1.60216 1.21825 0.99395 0.96077 1.08893 1.96360 1.36346 1.98928 1.65934 1.21320 0.97158 0.95872 0.96805 0.90041 0.83276 0.76302 0.76871 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.17 10.92 21.82 0.24 -41.93 14 2 C 0.03 1.68 5.17 85.23 0.44 2.12 14 3 Si 0.98 36.83 29.59 68.60 2.03 38.86 14 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 14 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 14 6 H -0.26 -9.33 7.11 99.48 0.71 -8.63 14 7 C -0.48 -24.74 9.06 23.39 0.21 -24.53 14 8 H 0.09 4.19 7.90 -2.91 -0.02 4.16 14 9 C 0.00 0.06 5.59 -21.18 -0.12 -0.05 14 10 C 0.02 0.86 10.97 85.37 0.94 1.80 14 11 N -0.52 -24.71 10.37 -191.11 -1.98 -26.70 14 12 C 0.31 13.56 7.74 133.32 1.03 14.59 14 13 N -0.85 -29.46 8.99 -55.22 -0.50 -29.96 14 14 C -0.18 -8.12 6.22 22.27 0.14 -7.98 14 15 Br -0.06 -2.15 32.09 -20.37 -0.65 -2.81 14 16 C -0.08 -4.26 8.48 22.65 0.19 -4.07 14 17 H 0.29 13.37 8.30 -92.71 -0.77 12.60 14 18 H 0.15 6.61 8.06 -2.91 -0.02 6.59 14 19 H 0.41 12.41 7.16 -92.71 -0.66 11.74 14 20 H 0.40 12.15 8.95 -92.71 -0.83 11.32 14 21 H 0.13 6.72 6.19 -2.91 -0.02 6.70 14 Total: -1.00 -55.90 213.08 1.76 -54.14 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.21 Total: 26.52 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 2.83 Total: -18.12 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -2.24 Total: -98.59 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 35 Polarization: -2.15 SS G_CDS: -0.65 Total: -2.81 kcal Total: -55.90 1.76 -54.14 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238687125.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.279 kcal (2) G-P(sol) polarization free energy of solvation -55.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds