Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47314 * 2 1 4 4 C 1.46897 * 111.00021 * 166.00585 * 3 2 1 5 5 C 1.50702 * 109.46979 * 282.50410 * 4 3 2 6 6 H 1.08002 * 120.00031 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99973 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47339 * 89.99985 * 9 7 5 11 11 H 1.48497 * 109.47089 * 210.00131 * 9 7 5 12 12 H 1.48503 * 109.47024 * 330.00172 * 9 7 5 13 13 C 1.46906 * 110.99717 * 289.95695 * 3 2 1 14 14 H 1.08998 * 108.85271 * 66.49908 * 13 3 2 15 15 C 1.50470 * 108.87257 * 184.96589 * 13 3 2 16 16 C 1.54245 * 108.52194 * 214.92576 * 15 13 3 17 17 C 1.45542 * 112.40469 * 280.01914 * 16 15 13 18 18 C 1.54242 * 112.41213 * 61.93183 * 17 16 15 19 19 C 1.50469 * 108.51644 * 280.01393 * 18 17 16 20 20 C 1.54062 * 112.49904 * 94.15341 * 19 18 17 21 21 H 1.08993 * 108.81698 * 79.14481 * 20 19 18 22 22 O 1.42908 * 108.72583 * 197.48253 * 20 19 18 23 23 H 1.08993 * 109.47129 * 65.69565 * 1 2 3 24 24 H 1.08999 * 109.46492 * 305.70203 * 1 2 3 25 25 H 1.08993 * 109.47170 * 185.70606 * 1 2 3 26 26 H 1.08998 * 109.47067 * 120.00080 * 2 1 3 27 27 H 1.09003 * 109.46974 * 239.99812 * 2 1 3 28 28 H 1.09003 * 109.47340 * 42.50119 * 4 3 2 29 29 H 1.08998 * 109.47313 * 162.50371 * 4 3 2 30 30 H 0.96998 * 119.99903 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.63252 * 334.63243 * 15 13 3 32 32 H 1.09002 * 109.63254 * 95.21679 * 15 13 3 33 33 H 1.08998 * 108.89678 * 159.26611 * 16 15 13 34 34 H 1.09000 * 108.82014 * 40.71787 * 16 15 13 35 35 H 1.09006 * 108.89184 * 301.17775 * 17 16 15 36 36 H 1.08998 * 108.81972 * 182.64127 * 17 16 15 37 37 H 1.08997 * 109.63057 * 160.29766 * 18 17 16 38 38 H 1.08999 * 109.62355 * 39.71529 * 18 17 16 39 39 H 1.08999 * 108.87663 * 333.36765 * 19 18 17 40 40 H 1.09002 * 108.87390 * 214.92434 * 19 18 17 41 41 H 0.96699 * 113.99471 * 303.89346 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4498 1.4377 0.3316 5 6 3.6277 1.2611 1.8177 6 1 2.7647 1.1231 2.4522 7 6 4.8922 1.2747 2.3671 8 7 5.9432 1.4413 1.5942 9 14 5.1127 1.0551 4.2089 10 1 5.2626 -0.3889 4.5209 11 1 6.3268 1.7860 4.6527 12 1 3.9240 1.5938 4.9175 13 6 1.7539 2.0373 -1.2892 14 1 0.6764 2.1448 -1.4139 15 6 2.3801 3.4055 -1.2806 16 6 1.4757 4.3633 -2.0831 17 6 1.6678 4.2341 -3.5200 18 6 1.3102 2.8255 -4.0367 19 6 2.4654 1.9044 -3.7517 20 6 2.3003 1.1460 -2.4209 21 1 1.6148 0.3125 -2.5740 22 8 3.5728 0.6288 -2.0266 23 1 -0.3633 0.4229 -0.9365 24 1 -0.3632 0.5997 0.8345 25 1 -0.3633 -1.0225 0.1022 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.9745 0.6400 -0.1944 29 1 3.8577 2.4021 0.0289 30 1 6.8328 1.4512 1.9808 31 1 2.4698 3.7608 -0.2540 32 1 3.3662 3.3598 -1.7427 33 1 1.6979 5.3888 -1.7881 34 1 0.4345 4.1457 -1.8452 35 1 2.7112 4.4426 -3.7567 36 1 1.0384 4.9661 -4.0261 37 1 1.1292 2.8645 -5.1109 38 1 0.4184 2.4634 -3.5252 39 1 3.3829 2.4914 -3.7117 40 1 2.5473 1.1803 -4.5624 41 1 3.9905 0.0637 -2.6908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249854484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = -51.723139 kcal Electronic energy + Delta-G solvation = -19243.764616 eV Core-core repulsion = 16544.414907 eV Total energy + Delta-G solvation = -2699.349709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.62487 -36.11252 -35.23153 -32.47418 -31.58868 -30.44299 -29.00607 -26.06000 -24.20822 -23.57123 -21.98468 -20.81411 -20.18361 -18.20739 -16.80217 -16.19772 -15.68602 -15.20652 -14.52738 -13.95522 -13.94251 -13.57818 -13.28256 -13.17483 -12.71170 -12.54225 -11.91546 -11.83428 -11.63535 -11.44109 -10.94499 -10.89551 -10.75266 -10.60238 -10.45947 -10.36431 -10.22052 -10.15721 -9.93891 -9.82316 -9.44498 -9.25028 -8.93357 -8.20261 -6.86885 -5.81810 -3.81181 3.40820 3.46717 3.51519 4.56453 4.64007 4.81565 4.92770 5.07874 5.26297 5.41149 5.46713 5.52522 5.55287 5.61263 5.74712 5.81789 5.89273 5.97146 6.06977 6.16812 6.18093 6.26490 6.28797 6.33907 6.42919 6.45778 6.55252 6.59332 6.76080 6.88158 6.93461 7.01774 7.60302 7.96215 8.05242 8.15616 8.41986 8.53986 8.84292 9.30154 9.80246 11.27334 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.007492 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.682344 B = 3736.415422 C = 3994.848552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 N -0.525 5.525 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.056 0.944 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.099 3.901 14 H 0.072 0.928 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.149 4.149 20 C 0.072 3.928 21 H 0.039 0.961 22 O -0.529 6.529 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.256 0.744 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 1.316 -11.373 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 N -0.248 5.248 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 C -0.010 4.010 14 H 0.090 0.910 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.188 4.188 20 C 0.011 3.989 21 H 0.057 0.943 22 O -0.334 6.334 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.132 1.935 -10.423 13.992 hybrid contribution 0.777 -0.934 -0.232 1.237 sum -8.355 1.002 -10.655 13.577 Atomic orbital electron populations 1.21821 0.97308 1.00125 1.01088 1.21967 0.93343 0.91267 1.00836 1.62569 1.22528 1.14820 1.24927 1.19968 0.80669 0.98101 0.94768 1.21376 0.91865 1.47600 0.93281 0.92529 1.24943 0.96094 0.96169 0.97517 1.69986 0.97962 1.51376 1.34543 0.86640 0.77397 0.77877 0.86298 1.21013 1.21492 1.20014 1.21586 0.97997 0.93561 0.87881 0.91025 1.21450 0.98336 0.93558 1.01181 1.20518 1.00262 0.99925 0.95083 1.20503 1.01419 0.96438 0.96852 1.21243 0.98468 0.95316 0.99989 1.22110 0.99836 0.99262 0.97559 1.23202 0.86074 0.95431 0.94169 0.94261 1.87271 1.33592 1.68814 1.43683 0.94136 0.92284 0.93684 0.90734 0.95462 0.94997 0.95186 0.93388 0.89897 0.91569 0.92504 0.92470 0.92295 0.92922 0.92383 0.91740 0.91052 0.93084 0.80284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.79 37.16 0.36 -2.00 16 2 C 0.05 1.09 5.07 -3.82 -0.02 1.07 16 3 N -0.53 -11.50 4.34 -228.93 -0.99 -12.50 16 4 C 0.19 5.00 3.34 -4.98 -0.02 4.99 16 5 C -0.50 -14.62 8.63 -34.44 -0.30 -14.92 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.10 1.79 1.56 -68.41 -0.11 1.68 16 14 H 0.07 1.21 5.48 -51.93 -0.28 0.92 16 15 C -0.11 -1.93 3.67 -27.34 -0.10 -2.03 16 16 C -0.12 -1.66 5.26 -29.60 -0.16 -1.82 16 17 C -0.11 -1.38 5.26 -29.60 -0.16 -1.54 16 18 C -0.11 -1.32 5.61 -27.35 -0.15 -1.47 16 19 C -0.15 -1.98 4.87 -27.44 -0.13 -2.11 16 20 C 0.07 1.17 2.23 -25.62 -0.06 1.11 16 21 H 0.04 0.62 7.10 -51.93 -0.37 0.25 16 22 O -0.53 -9.96 8.47 -35.23 -0.30 -10.25 16 23 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.67 7.45 -51.93 -0.39 1.28 16 27 H 0.03 0.53 5.41 -51.93 -0.28 0.25 16 28 H 0.03 0.92 5.50 -51.93 -0.29 0.64 16 29 H 0.03 0.85 5.66 -51.93 -0.29 0.56 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.08 1.72 7.25 -51.93 -0.38 1.34 16 32 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.76 7.46 -51.93 -0.39 0.38 16 35 H 0.06 0.73 7.47 -51.93 -0.39 0.35 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 6.97 -51.93 -0.36 0.41 16 39 H 0.07 1.03 6.63 -51.93 -0.34 0.69 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.35 5.14 9.03 45.56 0.41 5.55 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -31.23 297.85 -8.16 -39.39 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.14 Total: 3.81 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.93 Total: -15.59 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.26 Total: -39.23 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.30 Total: -10.25 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.23 -8.16 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249854484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.331 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds