Wall clock time and date at job start Mon Mar 30 2020 03:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47314 * 2 1 4 4 C 1.46897 * 111.00021 * 166.00585 * 3 2 1 5 5 C 1.50702 * 109.46979 * 282.50410 * 4 3 2 6 6 H 1.08002 * 120.00031 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99973 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47339 * 89.99985 * 9 7 5 11 11 H 1.48497 * 109.47089 * 210.00131 * 9 7 5 12 12 H 1.48503 * 109.47024 * 330.00172 * 9 7 5 13 13 C 1.46906 * 110.99717 * 289.95695 * 3 2 1 14 14 H 1.08998 * 108.85271 * 66.49908 * 13 3 2 15 15 C 1.50470 * 108.87257 * 184.96589 * 13 3 2 16 16 C 1.54245 * 108.52194 * 214.92576 * 15 13 3 17 17 C 1.45542 * 112.40469 * 280.01914 * 16 15 13 18 18 C 1.54242 * 112.41213 * 61.93183 * 17 16 15 19 19 C 1.50469 * 108.51644 * 280.01393 * 18 17 16 20 20 C 1.54062 * 112.49904 * 94.15341 * 19 18 17 21 21 H 1.08993 * 108.81698 * 79.14481 * 20 19 18 22 22 O 1.42908 * 108.72583 * 197.48253 * 20 19 18 23 23 H 1.08993 * 109.47129 * 65.69565 * 1 2 3 24 24 H 1.08999 * 109.46492 * 305.70203 * 1 2 3 25 25 H 1.08993 * 109.47170 * 185.70606 * 1 2 3 26 26 H 1.08998 * 109.47067 * 120.00080 * 2 1 3 27 27 H 1.09003 * 109.46974 * 239.99812 * 2 1 3 28 28 H 1.09003 * 109.47340 * 42.50119 * 4 3 2 29 29 H 1.08998 * 109.47313 * 162.50371 * 4 3 2 30 30 H 0.96998 * 119.99903 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.63252 * 334.63243 * 15 13 3 32 32 H 1.09002 * 109.63254 * 95.21679 * 15 13 3 33 33 H 1.08998 * 108.89678 * 159.26611 * 16 15 13 34 34 H 1.09000 * 108.82014 * 40.71787 * 16 15 13 35 35 H 1.09006 * 108.89184 * 301.17775 * 17 16 15 36 36 H 1.08998 * 108.81972 * 182.64127 * 17 16 15 37 37 H 1.08997 * 109.63057 * 160.29766 * 18 17 16 38 38 H 1.08999 * 109.62355 * 39.71529 * 18 17 16 39 39 H 1.08999 * 108.87663 * 333.36765 * 19 18 17 40 40 H 1.09002 * 108.87390 * 214.92434 * 19 18 17 41 41 H 0.96699 * 113.99471 * 303.89346 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4498 1.4377 0.3316 5 6 3.6277 1.2611 1.8177 6 1 2.7647 1.1231 2.4522 7 6 4.8922 1.2747 2.3671 8 7 5.9432 1.4413 1.5942 9 14 5.1127 1.0551 4.2089 10 1 5.2626 -0.3889 4.5209 11 1 6.3268 1.7860 4.6527 12 1 3.9240 1.5938 4.9175 13 6 1.7539 2.0373 -1.2892 14 1 0.6764 2.1448 -1.4139 15 6 2.3801 3.4055 -1.2806 16 6 1.4757 4.3633 -2.0831 17 6 1.6678 4.2341 -3.5200 18 6 1.3102 2.8255 -4.0367 19 6 2.4654 1.9044 -3.7517 20 6 2.3003 1.1460 -2.4209 21 1 1.6148 0.3125 -2.5740 22 8 3.5728 0.6288 -2.0266 23 1 -0.3633 0.4229 -0.9365 24 1 -0.3632 0.5997 0.8345 25 1 -0.3633 -1.0225 0.1022 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.9745 0.6400 -0.1944 29 1 3.8577 2.4021 0.0289 30 1 6.8328 1.4512 1.9808 31 1 2.4698 3.7608 -0.2540 32 1 3.3662 3.3598 -1.7427 33 1 1.6979 5.3888 -1.7881 34 1 0.4345 4.1457 -1.8452 35 1 2.7112 4.4426 -3.7567 36 1 1.0384 4.9661 -4.0261 37 1 1.1292 2.8645 -5.1109 38 1 0.4184 2.4634 -3.5252 39 1 3.3829 2.4914 -3.7117 40 1 2.5473 1.1803 -4.5624 41 1 3.9905 0.0637 -2.6908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249854484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:27 Heat of formation + Delta-G solvation = -73.824636 kcal Electronic energy + Delta-G solvation = -19244.723009 eV Core-core repulsion = 16544.414907 eV Total energy + Delta-G solvation = -2700.308102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00723 -37.45913 -36.72121 -34.66678 -32.85377 -31.74684 -30.74787 -27.91428 -25.55888 -24.98321 -23.76025 -22.31613 -21.32177 -19.70142 -18.55147 -17.91390 -17.15386 -16.66950 -16.44456 -15.51877 -15.15734 -15.10669 -14.70144 -14.36908 -14.11561 -13.88558 -13.74893 -13.43405 -12.95697 -12.89304 -12.81121 -12.51850 -12.37200 -12.18969 -11.95222 -11.86540 -11.63884 -11.47697 -11.39549 -11.23672 -11.09630 -10.98561 -10.55353 -10.44643 -8.64280 -8.06510 -6.16078 1.39016 1.40603 1.51950 2.44634 3.18829 3.30602 3.60508 3.80022 3.89589 4.03490 4.21681 4.23236 4.35033 4.40182 4.41749 4.55347 4.64422 4.73450 4.81825 4.87101 5.00480 5.07241 5.09944 5.18474 5.23187 5.27810 5.33081 5.36889 5.44171 5.45640 5.50851 5.57879 5.64323 5.71177 5.94065 6.28057 6.62090 6.89430 6.96158 7.09704 7.51073 9.00654 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.007492 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.682344 B = 3736.415422 C = 3994.848552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 N -0.538 5.538 4 C 0.213 3.787 5 C -0.523 4.523 6 H 0.048 0.952 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.096 3.904 14 H 0.093 0.907 15 C -0.102 4.102 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.141 4.141 20 C 0.073 3.927 21 H 0.051 0.949 22 O -0.565 6.565 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.008 0.992 29 H 0.000 1.000 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 1.238 -12.437 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 N -0.262 5.262 4 C 0.087 3.913 5 C -0.562 4.562 6 H 0.067 0.933 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.194 1.194 13 C -0.013 4.013 14 H 0.111 0.889 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.179 4.179 20 C 0.013 3.987 21 H 0.069 0.931 22 O -0.371 6.371 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.018 0.982 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.101 1.851 -11.506 16.095 hybrid contribution 1.386 -0.914 0.062 1.662 sum -9.714 0.937 -11.444 15.041 Atomic orbital electron populations 1.21713 0.93780 1.01772 1.01839 1.21968 0.96097 0.89918 0.99374 1.62475 1.19426 1.16282 1.27982 1.19473 0.83312 0.95377 0.93111 1.21733 0.91902 1.47690 0.94830 0.93323 1.25814 0.95705 0.95685 1.02552 1.70120 0.98409 1.52111 1.36685 0.85537 0.77535 0.78207 0.80228 1.20015 1.20761 1.19363 1.21722 0.99215 0.93326 0.86993 0.88915 1.21326 0.98379 0.94937 0.99393 1.20448 0.99604 0.98815 0.95879 1.20496 1.01597 0.97733 0.95428 1.21270 0.97548 0.94205 1.01701 1.22018 0.99970 0.99646 0.96261 1.23184 0.85155 0.95631 0.94713 0.93075 1.87180 1.34980 1.69526 1.45441 0.92096 0.93046 0.91305 0.94071 0.95103 0.97446 0.98198 0.93217 0.93857 0.94015 0.92067 0.91235 0.93142 0.90231 0.89776 0.91273 0.92804 0.90872 0.78428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.79 71.98 0.70 -3.35 16 2 C 0.05 2.20 5.07 86.30 0.44 2.64 16 3 N -0.54 -24.17 4.34 -878.19 -3.82 -27.99 16 4 C 0.21 11.84 3.34 85.56 0.29 12.13 16 5 C -0.52 -31.62 8.63 25.60 0.22 -31.40 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.93 -58.81 13.29 21.45 0.28 -58.53 16 9 Si 0.96 46.84 29.54 68.60 2.03 48.87 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.10 3.45 1.56 44.46 0.07 3.51 16 14 H 0.09 2.92 5.48 -2.39 -0.01 2.91 16 15 C -0.10 -3.78 3.67 30.20 0.11 -3.67 16 16 C -0.11 -2.89 5.26 28.74 0.15 -2.74 16 17 C -0.12 -2.48 5.26 28.74 0.15 -2.33 16 18 C -0.11 -2.19 5.61 30.20 0.17 -2.02 16 19 C -0.14 -3.45 4.87 30.13 0.15 -3.30 16 20 C 0.07 2.30 2.23 31.32 0.07 2.37 16 21 H 0.05 1.49 7.10 -2.39 -0.02 1.47 16 22 O -0.56 -21.81 8.47 -148.98 -1.26 -23.07 16 23 H 0.06 1.60 7.08 -2.39 -0.02 1.58 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.89 7.45 -2.39 -0.02 1.87 16 27 H 0.03 1.20 5.41 -2.39 -0.01 1.19 16 28 H 0.01 0.48 5.50 -2.39 -0.01 0.47 16 29 H 0.00 0.00 5.66 -2.39 -0.01 -0.02 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.04 1.91 7.25 -2.39 -0.02 1.89 16 32 H 0.04 1.70 6.69 -2.39 -0.02 1.69 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.67 7.46 -2.39 -0.02 1.66 16 35 H 0.05 1.18 7.47 -2.38 -0.02 1.16 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.35 6.97 -2.39 -0.02 1.33 16 39 H 0.05 1.52 6.63 -2.39 -0.02 1.51 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.37 10.98 9.03 -74.06 -0.67 10.31 16 Total: -1.00 -70.36 297.85 0.55 -69.81 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.34 Total: 18.62 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 2.98 Total: -27.72 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.53 Total: -86.51 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -1.26 Total: -23.07 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -70.36 0.55 -69.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249854484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.011 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds