Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47104 * 2 1 4 4 C 1.46900 * 111.00178 * 286.87587 * 3 2 1 5 5 C 1.50698 * 109.46615 * 76.46646 * 4 3 2 6 6 H 1.07995 * 120.00188 * 0.52913 * 5 4 3 7 7 C 1.37883 * 119.99628 * 180.53722 * 5 4 3 8 8 N 1.31509 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47060 * 59.99523 * 9 7 5 11 11 H 1.48491 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46669 * 299.99719 * 9 7 5 13 13 C 1.46907 * 110.99878 * 162.92577 * 3 2 1 14 14 H 1.09001 * 108.85116 * 178.95843 * 13 3 2 15 15 C 1.54062 * 108.88015 * 60.39266 * 13 3 2 16 16 C 1.53996 * 112.85621 * 197.40974 * 15 13 3 17 17 C 1.50479 * 112.54831 * 318.44000 * 16 15 13 18 18 C 1.54246 * 108.52548 * 94.06918 * 17 16 15 19 19 C 1.45542 * 112.40247 * 280.02413 * 18 17 16 20 20 C 1.50480 * 108.87504 * 297.51371 * 13 3 2 21 21 H 1.08995 * 109.63236 * 95.22733 * 20 13 3 22 22 O 1.42907 * 109.62649 * 334.83686 * 20 13 3 23 23 H 1.08998 * 109.47036 * 69.22900 * 1 2 3 24 24 H 1.08997 * 109.47257 * 309.22264 * 1 2 3 25 25 H 1.09002 * 109.46975 * 189.22456 * 1 2 3 26 26 H 1.09006 * 109.47181 * 120.00219 * 2 1 3 27 27 H 1.08995 * 109.47356 * 239.99840 * 2 1 3 28 28 H 1.08996 * 109.47225 * 196.46663 * 4 3 2 29 29 H 1.09000 * 109.47229 * 316.46993 * 4 3 2 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.09001 * 108.81429 * 318.37041 * 15 13 3 32 32 H 1.09002 * 108.81023 * 76.64282 * 15 13 3 33 33 H 1.08996 * 108.91272 * 197.61015 * 16 15 13 34 34 H 1.08998 * 108.71243 * 79.13909 * 16 15 13 35 35 H 1.08997 * 109.62478 * 334.36138 * 17 16 15 36 36 H 1.09000 * 109.78884 * 213.87773 * 17 16 15 37 37 H 1.09002 * 108.89300 * 159.27219 * 18 17 16 38 38 H 1.08998 * 108.89467 * 40.77433 * 18 17 16 39 39 H 1.08999 * 108.89499 * 301.18528 * 19 18 17 40 40 H 1.08995 * 108.89714 * 182.69640 * 19 18 17 41 41 H 0.96699 * 113.99168 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8198 2.0141 -1.3124 5 6 0.3691 2.3886 -1.4740 6 1 -0.3324 2.1880 -0.6778 7 6 -0.0626 2.9874 -2.6386 8 7 0.7917 3.2320 -3.6080 9 14 -1.8611 3.4511 -2.8394 10 1 -2.2454 4.4145 -1.7768 11 1 -2.0654 4.0759 -4.1709 12 1 -2.7017 2.2319 -2.7299 13 6 3.4312 1.4443 0.4027 14 1 3.7626 2.4823 0.3728 15 6 4.2695 0.6243 -0.5964 16 6 5.6643 0.2636 -0.0524 17 6 6.3100 1.4065 0.6833 18 6 5.9989 1.2597 2.1869 19 6 4.6655 1.7341 2.5263 20 6 3.5571 0.9335 1.8125 21 1 3.8214 -0.1238 1.7967 22 8 2.3158 1.1078 2.4989 23 1 -0.3633 0.3644 -0.9609 24 1 -0.3633 0.6498 0.7961 25 1 -0.3633 -1.0144 0.1647 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.4365 2.9100 -1.3835 29 1 2.1040 1.3140 -2.0980 30 1 0.4879 3.6529 -4.4275 31 1 3.7344 -0.2956 -0.8324 32 1 4.3901 1.2030 -1.5122 33 1 6.3045 -0.0259 -0.8857 34 1 5.5664 -0.5829 0.6272 35 1 5.9084 2.3512 0.3169 36 1 7.3887 1.3826 0.5285 37 1 6.7323 1.8305 2.7565 38 1 6.0804 0.2084 2.4632 39 1 4.5813 2.7832 2.2429 40 1 4.5242 1.6491 3.6037 41 1 2.3265 0.7993 3.4153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249854488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -51.402105 kcal Electronic energy + Delta-G solvation = -19056.615702 eV Core-core repulsion = 16357.279913 eV Total energy + Delta-G solvation = -2699.335788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61247 -36.17049 -35.48474 -32.55964 -31.59676 -30.47855 -28.60814 -26.42353 -24.45883 -23.25865 -22.34404 -20.66323 -20.34282 -18.15043 -17.07814 -16.42023 -15.28195 -14.84016 -14.44931 -14.31509 -14.11155 -13.77752 -13.48497 -13.16927 -12.66557 -12.48328 -12.05696 -11.81279 -11.42801 -11.23681 -11.09485 -10.92129 -10.86544 -10.72381 -10.51620 -10.44544 -10.33945 -10.16252 -10.14212 -9.81411 -9.36211 -9.18105 -8.94935 -8.27992 -6.96294 -5.90784 -3.88570 3.40275 3.43738 3.47525 4.47845 4.54819 4.73396 4.76557 5.10946 5.20258 5.33476 5.40489 5.41966 5.44566 5.48965 5.60362 5.81187 5.87960 6.08545 6.11022 6.18869 6.21144 6.23679 6.27638 6.32840 6.38695 6.43871 6.53785 6.64729 6.75173 6.77225 7.09319 7.34065 7.48440 7.52465 7.96631 8.11306 8.31032 8.43582 8.74278 9.18672 9.72782 11.19789 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.006943 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.790915 B = 4031.770720 C = 4386.120487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 N -0.510 5.510 4 C 0.192 3.808 5 C -0.497 4.497 6 H 0.072 0.928 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.093 3.907 14 H 0.075 0.925 15 C -0.151 4.151 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.149 4.149 20 C 0.121 3.879 21 H 0.044 0.956 22 O -0.529 6.529 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.022 0.978 29 H -0.008 1.008 30 H 0.259 0.741 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -6.333 10.623 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 N -0.233 5.233 4 C 0.066 3.934 5 C -0.536 4.536 6 H 0.090 0.910 7 C -0.150 4.150 8 N -0.544 5.544 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.017 4.017 14 H 0.093 0.907 15 C -0.191 4.191 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.188 4.188 20 C 0.061 3.939 21 H 0.062 0.938 22 O -0.331 6.331 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.018 -5.723 10.189 14.761 hybrid contribution -0.151 -0.348 -0.379 0.536 sum 8.867 -6.070 9.811 14.551 Atomic orbital electron populations 1.21979 0.95487 0.98331 1.04371 1.21783 0.96396 0.89792 0.97413 1.62358 1.12781 1.15985 1.32206 1.19769 0.97339 0.93374 0.82892 1.21391 0.94093 1.37483 1.00617 0.90951 1.25005 0.97533 0.96301 0.96124 1.69955 1.34175 1.43973 1.06273 0.86632 0.85485 0.78766 0.76963 1.20268 1.21567 1.20313 1.21550 0.90084 0.98982 0.91103 0.90700 1.22671 0.95062 1.01246 1.00080 1.21299 0.96384 0.98009 0.99603 1.21378 0.99787 0.99831 0.94796 1.20418 0.96886 1.01158 0.96604 1.21202 0.95542 1.01832 1.00186 1.21461 0.83434 0.96567 0.92457 0.93778 1.86935 1.32667 1.86411 1.27055 0.89930 0.92520 0.95539 0.93126 0.96853 0.96032 0.99066 0.93149 0.91863 0.91475 0.92642 0.92641 0.91227 0.92208 0.92452 0.92487 0.91273 0.92251 0.79985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.57 37.16 0.32 -2.69 16 2 C 0.07 1.52 4.26 -3.83 -0.02 1.51 16 3 N -0.51 -11.35 3.71 -228.93 -0.85 -12.20 16 4 C 0.19 5.08 3.94 -4.98 -0.02 5.06 16 5 C -0.50 -14.16 7.12 -34.44 -0.25 -14.41 16 6 H 0.07 2.05 5.77 -52.49 -0.30 1.74 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.09 1.69 1.61 -68.41 -0.11 1.58 16 14 H 0.07 1.47 6.41 -51.93 -0.33 1.14 16 15 C -0.15 -2.53 4.49 -25.66 -0.12 -2.64 16 16 C -0.11 -1.48 5.31 -27.47 -0.15 -1.63 16 17 C -0.12 -1.42 5.61 -27.34 -0.15 -1.57 16 18 C -0.11 -1.22 5.26 -29.60 -0.16 -1.37 16 19 C -0.15 -1.84 4.93 -29.60 -0.15 -1.99 16 20 C 0.12 1.80 2.00 -27.34 -0.05 1.74 16 21 H 0.04 0.63 6.70 -51.93 -0.35 0.28 16 22 O -0.53 -8.54 11.25 -35.23 -0.40 -8.93 16 23 H 0.08 1.95 5.73 -51.93 -0.30 1.65 16 24 H 0.06 1.21 7.87 -51.93 -0.41 0.81 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.94 6.00 -51.93 -0.31 0.62 16 27 H 0.01 0.28 6.49 -51.93 -0.34 -0.05 16 28 H 0.02 0.62 7.78 -51.93 -0.40 0.21 16 29 H -0.01 -0.24 7.47 -51.93 -0.39 -0.63 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.06 1.11 5.92 -51.93 -0.31 0.80 16 32 H 0.07 1.25 7.80 -51.93 -0.40 0.84 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.67 6.63 -51.93 -0.34 0.32 16 35 H 0.07 0.92 6.98 -51.93 -0.36 0.56 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.57 7.47 -51.93 -0.39 0.19 16 39 H 0.07 0.95 7.47 -51.93 -0.39 0.56 16 40 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.36 3.97 9.05 45.56 0.41 4.38 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -31.10 298.15 -8.14 -39.24 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.16 Total: 1.87 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.94 Total: -15.04 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.11 Total: -38.78 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.40 Total: -8.93 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.10 -8.14 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249854488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.163 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds