Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47104 * 2 1 4 4 C 1.46900 * 111.00178 * 286.87587 * 3 2 1 5 5 C 1.50698 * 109.46615 * 76.46646 * 4 3 2 6 6 H 1.07995 * 120.00188 * 0.52913 * 5 4 3 7 7 C 1.37883 * 119.99628 * 180.53722 * 5 4 3 8 8 N 1.31509 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47060 * 59.99523 * 9 7 5 11 11 H 1.48491 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46669 * 299.99719 * 9 7 5 13 13 C 1.46907 * 110.99878 * 162.92577 * 3 2 1 14 14 H 1.09001 * 108.85116 * 178.95843 * 13 3 2 15 15 C 1.54062 * 108.88015 * 60.39266 * 13 3 2 16 16 C 1.53996 * 112.85621 * 197.40974 * 15 13 3 17 17 C 1.50479 * 112.54831 * 318.44000 * 16 15 13 18 18 C 1.54246 * 108.52548 * 94.06918 * 17 16 15 19 19 C 1.45542 * 112.40247 * 280.02413 * 18 17 16 20 20 C 1.50480 * 108.87504 * 297.51371 * 13 3 2 21 21 H 1.08995 * 109.63236 * 95.22733 * 20 13 3 22 22 O 1.42907 * 109.62649 * 334.83686 * 20 13 3 23 23 H 1.08998 * 109.47036 * 69.22900 * 1 2 3 24 24 H 1.08997 * 109.47257 * 309.22264 * 1 2 3 25 25 H 1.09002 * 109.46975 * 189.22456 * 1 2 3 26 26 H 1.09006 * 109.47181 * 120.00219 * 2 1 3 27 27 H 1.08995 * 109.47356 * 239.99840 * 2 1 3 28 28 H 1.08996 * 109.47225 * 196.46663 * 4 3 2 29 29 H 1.09000 * 109.47229 * 316.46993 * 4 3 2 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.09001 * 108.81429 * 318.37041 * 15 13 3 32 32 H 1.09002 * 108.81023 * 76.64282 * 15 13 3 33 33 H 1.08996 * 108.91272 * 197.61015 * 16 15 13 34 34 H 1.08998 * 108.71243 * 79.13909 * 16 15 13 35 35 H 1.08997 * 109.62478 * 334.36138 * 17 16 15 36 36 H 1.09000 * 109.78884 * 213.87773 * 17 16 15 37 37 H 1.09002 * 108.89300 * 159.27219 * 18 17 16 38 38 H 1.08998 * 108.89467 * 40.77433 * 18 17 16 39 39 H 1.08999 * 108.89499 * 301.18528 * 19 18 17 40 40 H 1.08995 * 108.89714 * 182.69640 * 19 18 17 41 41 H 0.96699 * 113.99168 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8198 2.0141 -1.3124 5 6 0.3691 2.3886 -1.4740 6 1 -0.3324 2.1880 -0.6778 7 6 -0.0626 2.9874 -2.6386 8 7 0.7917 3.2320 -3.6080 9 14 -1.8611 3.4511 -2.8394 10 1 -2.2454 4.4145 -1.7768 11 1 -2.0654 4.0759 -4.1709 12 1 -2.7017 2.2319 -2.7299 13 6 3.4312 1.4443 0.4027 14 1 3.7626 2.4823 0.3728 15 6 4.2695 0.6243 -0.5964 16 6 5.6643 0.2636 -0.0524 17 6 6.3100 1.4065 0.6833 18 6 5.9989 1.2597 2.1869 19 6 4.6655 1.7341 2.5263 20 6 3.5571 0.9335 1.8125 21 1 3.8214 -0.1238 1.7967 22 8 2.3158 1.1078 2.4989 23 1 -0.3633 0.3644 -0.9609 24 1 -0.3633 0.6498 0.7961 25 1 -0.3633 -1.0144 0.1647 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.4365 2.9100 -1.3835 29 1 2.1040 1.3140 -2.0980 30 1 0.4879 3.6529 -4.4275 31 1 3.7344 -0.2956 -0.8324 32 1 4.3901 1.2030 -1.5122 33 1 6.3045 -0.0259 -0.8857 34 1 5.5664 -0.5829 0.6272 35 1 5.9084 2.3512 0.3169 36 1 7.3887 1.3826 0.5285 37 1 6.7323 1.8305 2.7565 38 1 6.0804 0.2084 2.4632 39 1 4.5813 2.7832 2.2429 40 1 4.5242 1.6491 3.6037 41 1 2.3265 0.7993 3.4153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249854488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -73.362325 kcal Electronic energy + Delta-G solvation = -19057.567968 eV Core-core repulsion = 16357.279913 eV Total energy + Delta-G solvation = -2700.288055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92885 -37.71725 -36.64729 -34.66523 -32.88936 -31.85751 -30.40708 -28.26872 -25.76151 -24.54719 -24.24991 -22.27749 -21.40007 -19.61535 -18.54276 -18.26554 -16.71311 -16.62005 -15.93607 -15.86962 -15.24419 -15.15920 -14.94835 -14.48046 -14.18963 -14.07112 -13.64623 -13.20150 -13.03434 -12.92657 -12.87798 -12.59026 -12.48227 -12.26107 -12.09592 -11.96899 -11.63799 -11.52781 -11.35878 -11.21281 -11.06721 -10.87249 -10.51818 -10.48403 -8.78572 -8.13657 -6.20524 1.39959 1.43631 1.51091 2.42668 3.16378 3.21750 3.52485 3.72989 3.91542 4.09412 4.11501 4.21815 4.23679 4.35673 4.43442 4.51382 4.64702 4.65387 4.82626 4.89695 4.95599 5.03687 5.12962 5.13990 5.17576 5.23827 5.25805 5.29576 5.32399 5.36602 5.42364 5.47563 5.55002 5.71518 5.76384 6.16625 6.54231 6.76565 6.94739 7.22335 7.46252 8.96290 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.006943 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.790915 B = 4031.770720 C = 4386.120487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 N -0.520 5.520 4 C 0.213 3.787 5 C -0.509 4.509 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.089 3.911 14 H 0.050 0.950 15 C -0.144 4.144 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.141 4.141 20 C 0.126 3.874 21 H 0.063 0.937 22 O -0.557 6.557 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.003 0.997 28 H -0.014 1.014 29 H -0.039 1.039 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.748 -7.665 12.810 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 N -0.243 5.243 4 C 0.086 3.914 5 C -0.548 4.548 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.020 4.020 14 H 0.068 0.932 15 C -0.183 4.183 16 C -0.145 4.145 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.179 4.179 20 C 0.067 3.933 21 H 0.081 0.919 22 O -0.362 6.362 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.021 0.979 28 H 0.004 0.996 29 H -0.021 1.021 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.285 -7.071 12.413 17.038 hybrid contribution -0.199 0.061 -1.041 1.061 sum 9.086 -7.010 11.372 16.156 Atomic orbital electron populations 1.21863 0.95590 1.00021 1.02030 1.21812 0.96292 0.88729 0.98176 1.62289 1.15900 1.17159 1.28977 1.19349 0.95961 0.91528 0.84541 1.21701 0.94887 1.37374 1.00805 0.90862 1.25915 1.02317 0.96153 0.95735 1.70100 1.36430 1.44797 1.06830 0.85529 0.79786 0.78821 0.77080 1.19561 1.21030 1.19051 1.21675 0.87982 0.98342 0.93982 0.93220 1.22553 0.97575 0.99722 0.98493 1.21267 0.93647 0.99125 1.00427 1.21405 1.00855 0.97987 0.95736 1.20414 0.96172 1.02623 0.95591 1.21129 0.95484 0.99980 1.01334 1.21389 0.84116 0.97690 0.90120 0.91943 1.86858 1.33354 1.86926 1.29086 0.93289 0.93310 0.92145 0.90203 0.97904 0.99555 1.02131 0.93039 0.92732 0.94956 0.91781 0.90545 0.93709 0.90031 0.90539 0.90543 0.93509 0.89646 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.57 71.98 0.62 -5.03 16 2 C 0.08 3.16 4.26 86.30 0.37 3.53 16 3 N -0.52 -23.83 3.71 -878.20 -3.26 -27.09 16 4 C 0.21 11.97 3.94 85.56 0.34 12.30 16 5 C -0.51 -30.02 7.12 25.60 0.18 -29.84 16 6 H 0.07 4.23 5.77 -2.91 -0.02 4.21 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -58.92 13.29 21.45 0.28 -58.63 16 9 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.09 3.35 1.61 44.46 0.07 3.42 16 14 H 0.05 2.08 6.41 -2.39 -0.02 2.06 16 15 C -0.14 -4.95 4.49 31.29 0.14 -4.81 16 16 C -0.11 -2.59 5.31 30.11 0.16 -2.43 16 17 C -0.12 -2.67 5.61 30.20 0.17 -2.50 16 18 C -0.11 -2.00 5.26 28.74 0.15 -1.85 16 19 C -0.14 -3.13 4.93 28.74 0.14 -2.99 16 20 C 0.13 3.53 2.00 30.20 0.06 3.59 16 21 H 0.06 1.55 6.70 -2.39 -0.02 1.53 16 22 O -0.56 -16.81 11.25 -148.98 -1.68 -18.49 16 23 H 0.05 2.33 5.73 -2.39 -0.01 2.32 16 24 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.79 6.00 -2.38 -0.01 2.77 16 27 H 0.00 0.12 6.49 -2.39 -0.02 0.11 16 28 H -0.01 -0.85 7.78 -2.39 -0.02 -0.87 16 29 H -0.04 -2.37 7.47 -2.39 -0.02 -2.39 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.05 1.94 5.92 -2.39 -0.01 1.93 16 32 H 0.03 1.29 7.80 -2.39 -0.02 1.27 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.57 6.63 -2.39 -0.02 1.55 16 35 H 0.04 1.20 6.98 -2.39 -0.02 1.18 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.15 7.47 -2.39 -0.02 1.13 16 39 H 0.05 1.25 7.47 -2.39 -0.02 1.23 16 40 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 41 H 0.38 7.25 9.05 -74.06 -0.67 6.58 16 Total: -1.00 -70.17 298.15 0.57 -69.60 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.33 Total: 12.84 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 2.86 Total: -26.40 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.97 Total: -85.72 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.68 Total: -18.49 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.17 0.57 -69.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249854488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.767 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds