Wall clock time and date at job start Mon Mar 30 2020 04:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 111.00121 * 2 1 4 4 C 1.46905 * 110.99584 * 123.95251 * 2 1 3 5 5 C 1.52998 * 109.47368 * 66.04671 * 4 2 1 6 6 N 1.46896 * 109.47339 * 179.97438 * 5 4 2 7 7 C 1.46956 * 110.99775 * 46.20094 * 6 5 4 8 8 C 1.53053 * 109.36712 * 183.18573 * 7 6 5 9 9 N 1.46963 * 109.36224 * 301.60353 * 8 7 6 10 10 C 1.46900 * 110.99608 * 183.18585 * 9 8 7 11 11 C 1.46956 * 110.88015 * 59.31646 * 9 8 7 12 12 C 1.46959 * 111.00014 * 169.99899 * 6 5 4 13 13 H 1.09001 * 109.49034 * 296.78328 * 12 6 5 14 14 C 1.50701 * 109.48589 * 56.84684 * 12 6 5 15 15 H 1.08002 * 120.00298 * 359.89076 * 14 12 6 16 16 C 1.37875 * 119.99826 * 179.88956 * 14 12 6 17 17 N 1.31522 * 119.99893 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00136 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47206 * 89.99858 * 18 16 14 20 20 H 1.48498 * 109.47475 * 209.99929 * 18 16 14 21 21 H 1.48501 * 109.47055 * 330.00212 * 18 16 14 22 22 H 1.09001 * 109.47133 * 296.04740 * 1 2 3 23 23 H 1.08994 * 109.46651 * 56.04856 * 1 2 3 24 24 H 1.09001 * 109.47240 * 176.04719 * 1 2 3 25 25 H 1.08999 * 109.47149 * 183.95127 * 3 2 1 26 26 H 1.09005 * 109.47212 * 303.95615 * 3 2 1 27 27 H 1.09002 * 109.47028 * 63.95087 * 3 2 1 28 28 H 1.09000 * 109.46788 * 306.04378 * 4 2 1 29 29 H 1.09004 * 109.46743 * 186.04607 * 4 2 1 30 30 H 1.09001 * 109.46870 * 59.99539 * 5 4 2 31 31 H 1.08998 * 109.47058 * 300.00388 * 5 4 2 32 32 H 1.09001 * 109.49384 * 303.15745 * 7 6 5 33 33 H 1.09003 * 109.48892 * 63.20019 * 7 6 5 34 34 H 1.09000 * 109.48742 * 181.63325 * 8 7 6 35 35 H 1.08997 * 109.48191 * 61.56330 * 8 7 6 36 36 H 1.09002 * 109.47023 * 296.19678 * 10 9 8 37 37 H 1.09005 * 109.47285 * 56.19860 * 10 9 8 38 38 H 1.08999 * 109.46731 * 176.20051 * 10 9 8 39 39 H 1.08997 * 109.48658 * 60.64728 * 11 9 8 40 40 H 1.08997 * 109.48501 * 180.70899 * 11 9 8 41 41 H 0.97000 * 119.99639 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2426 0.9705 6 7 2.1583 -3.0087 2.1078 7 6 1.8626 -2.3340 3.3794 8 6 2.4950 -3.1202 4.5302 9 7 1.9683 -4.4923 4.5302 10 6 2.4952 -5.2583 5.6676 11 6 2.2641 -5.1669 3.2586 12 6 1.6317 -4.3806 2.1079 13 1 0.5496 -4.3548 2.2366 14 6 1.9670 -5.0479 0.7989 15 1 2.5148 -4.5068 0.0416 16 6 1.5744 -6.3493 0.5681 17 7 0.9078 -7.0085 1.4906 18 14 1.9906 -7.1767 -1.0541 19 1 3.3063 -7.8560 -0.9401 20 1 0.9437 -8.1774 -1.3823 21 1 2.0529 -6.1545 -2.1295 22 1 -0.3633 0.4513 0.9233 23 1 -0.3632 0.5739 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5611 -0.3871 2.0628 29 1 3.0798 -0.6611 1.1757 30 1 2.0658 -2.6213 0.0453 31 1 0.5472 -2.3475 0.9323 32 1 2.2733 -1.3245 3.3597 33 1 0.7831 -2.2846 3.5224 34 1 2.2524 -2.6375 5.4769 35 1 3.5770 -3.1461 4.4014 36 1 3.5760 -5.3589 5.5684 37 1 2.2624 -4.7367 6.5960 38 1 2.0380 -6.2477 5.6822 39 1 3.3436 -5.2159 3.1155 40 1 1.8534 -6.1763 3.2783 41 1 0.6313 -7.9239 1.3280 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250387510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:55 Heat of formation + Delta-G solvation = 27.450391 kcal Electronic energy + Delta-G solvation = -18629.687455 eV Core-core repulsion = 15966.063719 eV Total energy + Delta-G solvation = -2663.623736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.66350 -37.12206 -34.55332 -32.95741 -29.68043 -29.48631 -27.44800 -26.52590 -25.22872 -23.74053 -22.50737 -21.34457 -20.02338 -18.66937 -16.55380 -15.67711 -15.22917 -14.83512 -14.66968 -14.24102 -14.14089 -13.87762 -13.52609 -13.31533 -12.88001 -12.57738 -12.27313 -12.12153 -11.60786 -11.43400 -11.41522 -11.27061 -10.95385 -10.84610 -10.67340 -10.59218 -10.44668 -10.09713 -9.96408 -9.51854 -8.91463 -8.45100 -8.13694 -7.49452 -7.12363 -6.02164 -4.06875 3.32175 3.38655 3.43017 4.10117 4.41720 4.81886 5.05348 5.29414 5.31246 5.33858 5.47092 5.51165 5.71043 5.74486 5.76773 5.83268 5.89322 5.94527 5.98334 6.04318 6.07396 6.15143 6.31516 6.36827 6.49329 6.62803 6.75162 6.85411 6.98017 7.21312 7.27275 7.37444 7.56555 7.79156 7.92333 8.00700 8.15849 8.32204 8.62152 9.01310 9.58590 11.04554 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.009162 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.532658 B = 3055.375787 C = 4531.613650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.028 3.972 4 C 0.051 3.949 5 C 0.076 3.924 6 N -0.537 5.537 7 C 0.054 3.946 8 C 0.061 3.939 9 N -0.551 5.551 10 C 0.031 3.969 11 C 0.068 3.932 12 C 0.225 3.775 13 H 0.008 0.992 14 C -0.506 4.506 15 H 0.066 0.934 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.016 0.984 40 H 0.108 0.892 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 10.816 2.499 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.271 5.271 3 C -0.121 4.121 4 C -0.076 4.076 5 C -0.052 4.052 6 N -0.263 5.263 7 C -0.075 4.075 8 C -0.068 4.068 9 N -0.275 5.275 10 C -0.118 4.118 11 C -0.060 4.060 12 C 0.119 3.881 13 H 0.026 0.974 14 C -0.545 4.545 15 H 0.084 0.916 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.126 0.874 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.255 10.393 2.097 10.676 hybrid contribution -0.064 -0.133 0.012 0.148 sum 1.191 10.260 2.108 10.542 Atomic orbital electron populations 1.22437 0.87600 1.02871 0.99700 1.61877 1.07916 1.13153 1.44120 1.22345 1.00708 0.89160 0.99894 1.22399 1.00243 0.94864 0.90118 1.21859 0.97257 0.89911 0.96186 1.62299 1.59762 1.04167 1.00031 1.22136 0.97799 0.96655 0.90946 1.22052 0.96957 0.90557 0.97186 1.62330 1.58582 1.01944 1.04682 1.22240 0.96910 0.98759 0.93854 1.22492 0.97330 1.00617 0.85516 1.19258 0.93056 0.81960 0.93856 0.97434 1.21151 1.35680 0.97683 0.99971 0.91614 1.24961 0.94903 0.97291 0.96969 1.69887 1.38474 1.11267 1.33394 0.86509 0.77944 0.79231 0.83839 1.20710 1.21317 1.19761 0.96100 0.91851 0.90586 0.91493 0.91742 0.96154 0.95143 0.90509 0.89535 0.95624 0.91793 0.95501 0.92178 0.95105 0.96654 0.92855 0.91738 0.96595 0.87431 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.32 60.07 0.56 0.86 16 2 N -0.55 -8.12 5.02 -251.25 -1.26 -9.38 16 3 C 0.03 0.32 9.57 60.06 0.57 0.90 16 4 C 0.05 0.84 4.22 -3.82 -0.02 0.82 16 5 C 0.08 1.53 4.63 -3.83 -0.02 1.51 16 6 N -0.54 -11.77 4.67 -227.88 -1.06 -12.83 16 7 C 0.05 1.02 4.93 -3.77 -0.02 1.00 16 8 C 0.06 1.14 5.62 -3.76 -0.02 1.12 16 9 N -0.55 -11.64 4.97 -242.75 -1.21 -12.85 16 10 C 0.03 0.55 9.60 60.06 0.58 1.13 16 11 C 0.07 1.67 4.66 -3.77 -0.02 1.65 16 12 C 0.23 5.76 1.91 -68.81 -0.13 5.63 16 13 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 14 C -0.51 -13.82 8.02 -34.44 -0.28 -14.10 16 15 H 0.07 1.80 6.50 -52.49 -0.34 1.46 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.23 11.34 55.43 0.63 -24.60 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.08 1.14 6.47 -51.93 -0.34 0.80 16 25 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.03 0.48 6.24 -51.93 -0.32 0.16 16 29 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 30 H 0.09 1.91 6.68 -51.93 -0.35 1.56 16 31 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 32 H 0.06 1.06 5.99 -51.93 -0.31 0.75 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 2.92 6.12 -51.93 -0.32 2.61 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -28.61 311.25 -9.47 -38.09 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.36 Total: -1.48 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 1.12 Total: 2.08 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -2.90 Total: -59.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.61 -9.47 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250387510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.537 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds