Wall clock time and date at job start Mon Mar 30 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 111.00121 * 2 1 4 4 C 1.46905 * 110.99584 * 123.95251 * 2 1 3 5 5 C 1.52998 * 109.47368 * 66.04671 * 4 2 1 6 6 N 1.46896 * 109.47339 * 179.97438 * 5 4 2 7 7 C 1.46956 * 110.99775 * 46.20094 * 6 5 4 8 8 C 1.53053 * 109.36712 * 183.18573 * 7 6 5 9 9 N 1.46963 * 109.36224 * 301.60353 * 8 7 6 10 10 C 1.46900 * 110.99608 * 183.18585 * 9 8 7 11 11 C 1.46956 * 110.88015 * 59.31646 * 9 8 7 12 12 C 1.46959 * 111.00014 * 169.99899 * 6 5 4 13 13 H 1.09001 * 109.49034 * 296.78328 * 12 6 5 14 14 C 1.50701 * 109.48589 * 56.84684 * 12 6 5 15 15 H 1.08002 * 120.00298 * 359.89076 * 14 12 6 16 16 C 1.37875 * 119.99826 * 179.88956 * 14 12 6 17 17 N 1.31522 * 119.99893 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00136 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47206 * 89.99858 * 18 16 14 20 20 H 1.48498 * 109.47475 * 209.99929 * 18 16 14 21 21 H 1.48501 * 109.47055 * 330.00212 * 18 16 14 22 22 H 1.09001 * 109.47133 * 296.04740 * 1 2 3 23 23 H 1.08994 * 109.46651 * 56.04856 * 1 2 3 24 24 H 1.09001 * 109.47240 * 176.04719 * 1 2 3 25 25 H 1.08999 * 109.47149 * 183.95127 * 3 2 1 26 26 H 1.09005 * 109.47212 * 303.95615 * 3 2 1 27 27 H 1.09002 * 109.47028 * 63.95087 * 3 2 1 28 28 H 1.09000 * 109.46788 * 306.04378 * 4 2 1 29 29 H 1.09004 * 109.46743 * 186.04607 * 4 2 1 30 30 H 1.09001 * 109.46870 * 59.99539 * 5 4 2 31 31 H 1.08998 * 109.47058 * 300.00388 * 5 4 2 32 32 H 1.09001 * 109.49384 * 303.15745 * 7 6 5 33 33 H 1.09003 * 109.48892 * 63.20019 * 7 6 5 34 34 H 1.09000 * 109.48742 * 181.63325 * 8 7 6 35 35 H 1.08997 * 109.48191 * 61.56330 * 8 7 6 36 36 H 1.09002 * 109.47023 * 296.19678 * 10 9 8 37 37 H 1.09005 * 109.47285 * 56.19860 * 10 9 8 38 38 H 1.08999 * 109.46731 * 176.20051 * 10 9 8 39 39 H 1.08997 * 109.48658 * 60.64728 * 11 9 8 40 40 H 1.08997 * 109.48501 * 180.70899 * 11 9 8 41 41 H 0.97000 * 119.99639 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2426 0.9705 6 7 2.1583 -3.0087 2.1078 7 6 1.8626 -2.3340 3.3794 8 6 2.4950 -3.1202 4.5302 9 7 1.9683 -4.4923 4.5302 10 6 2.4952 -5.2583 5.6676 11 6 2.2641 -5.1669 3.2586 12 6 1.6317 -4.3806 2.1079 13 1 0.5496 -4.3548 2.2366 14 6 1.9670 -5.0479 0.7989 15 1 2.5148 -4.5068 0.0416 16 6 1.5744 -6.3493 0.5681 17 7 0.9078 -7.0085 1.4906 18 14 1.9906 -7.1767 -1.0541 19 1 3.3063 -7.8560 -0.9401 20 1 0.9437 -8.1774 -1.3823 21 1 2.0529 -6.1545 -2.1295 22 1 -0.3633 0.4513 0.9233 23 1 -0.3632 0.5739 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5611 -0.3871 2.0628 29 1 3.0798 -0.6611 1.1757 30 1 2.0658 -2.6213 0.0453 31 1 0.5472 -2.3475 0.9323 32 1 2.2733 -1.3245 3.3597 33 1 0.7831 -2.2846 3.5224 34 1 2.2524 -2.6375 5.4769 35 1 3.5770 -3.1461 4.4014 36 1 3.5760 -5.3589 5.5684 37 1 2.2624 -4.7367 6.5960 38 1 2.0380 -6.2477 5.6822 39 1 3.3436 -5.2159 3.1155 40 1 1.8534 -6.1763 3.2783 41 1 0.6313 -7.9239 1.3280 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250387510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:52 Heat of formation + Delta-G solvation = 5.062628 kcal Electronic energy + Delta-G solvation = -18630.658261 eV Core-core repulsion = 15966.063719 eV Total energy + Delta-G solvation = -2664.594543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32078 -38.41698 -36.16202 -34.96712 -31.54816 -30.94798 -28.47583 -28.01392 -27.24474 -25.21581 -23.98683 -23.06341 -21.49451 -20.42117 -18.55109 -17.34353 -16.49812 -16.47198 -16.15112 -15.79040 -15.68262 -15.36978 -15.34026 -14.82309 -14.45192 -14.04486 -13.90156 -13.27610 -12.97156 -12.96212 -12.78123 -12.66233 -12.57589 -12.53062 -12.44039 -12.23500 -12.04326 -11.95797 -11.75891 -11.24294 -10.90437 -10.54048 -9.27583 -9.16927 -8.93776 -8.13271 -6.25795 1.41890 1.42227 1.53397 2.41193 2.88361 3.08216 3.31515 3.51596 4.06511 4.08970 4.20409 4.30557 4.33378 4.43031 4.47888 4.55826 4.59259 4.64375 4.68822 4.72550 4.75451 4.86438 4.95624 4.98259 4.99404 5.03057 5.06858 5.11828 5.20091 5.43313 5.60215 5.68510 6.01868 6.11195 6.15005 6.24195 6.30419 6.48316 6.73330 6.89039 7.43705 8.92624 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.009162 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.532658 B = 3055.375787 C = 4531.613650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.565 5.565 3 C 0.028 3.972 4 C 0.068 3.932 5 C 0.084 3.916 6 N -0.543 5.543 7 C 0.053 3.947 8 C 0.061 3.939 9 N -0.567 5.567 10 C 0.032 3.968 11 C 0.085 3.915 12 C 0.233 3.767 13 H -0.038 1.038 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.269 1.269 22 H 0.029 0.971 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.007 0.993 32 H 0.098 0.902 33 H 0.015 0.985 34 H 0.097 0.903 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.087 0.913 38 H 0.056 0.944 39 H -0.001 1.001 40 H 0.077 0.923 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 12.594 2.904 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.290 5.290 3 C -0.119 4.119 4 C -0.060 4.060 5 C -0.045 4.045 6 N -0.268 5.268 7 C -0.075 4.075 8 C -0.067 4.067 9 N -0.292 5.292 10 C -0.116 4.116 11 C -0.043 4.043 12 C 0.125 3.875 13 H -0.020 1.020 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.047 0.953 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.116 0.884 33 H 0.034 0.966 34 H 0.115 0.885 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.017 0.983 40 H 0.095 0.905 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.018 12.199 2.513 12.618 hybrid contribution -0.328 -0.634 -0.088 0.719 sum 1.689 11.565 2.425 11.937 Atomic orbital electron populations 1.22417 0.87085 1.01815 1.01085 1.61836 1.08595 1.15115 1.43451 1.22410 1.01056 0.87303 1.01176 1.22146 1.00526 0.92094 0.91270 1.21741 0.95725 0.92483 0.94526 1.62243 1.59424 1.03113 1.02057 1.22280 0.97447 0.98123 0.89637 1.22182 0.96764 0.89083 0.98673 1.62260 1.59636 1.03373 1.03908 1.22302 0.97018 0.98526 0.93745 1.22040 0.95511 0.99339 0.87406 1.18983 0.90387 0.84360 0.93738 1.02013 1.21382 1.35805 0.98188 1.00817 0.92380 1.25724 0.94703 0.97821 1.00186 1.70022 1.39101 1.11484 1.35012 0.85528 0.77900 0.78187 0.79884 1.20017 1.20743 1.19395 0.95254 0.89753 0.93018 0.90947 0.90117 0.95082 0.94101 0.90038 0.92240 0.97500 0.88438 0.96632 0.88455 0.95060 0.96123 0.89469 0.92518 0.98280 0.90484 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.32 127.69 1.19 1.82 16 2 N -0.57 -15.88 5.02 -948.81 -4.76 -20.65 16 3 C 0.03 0.58 9.57 127.69 1.22 1.80 16 4 C 0.07 2.11 4.22 86.30 0.36 2.47 16 5 C 0.08 3.42 4.63 86.30 0.40 3.82 16 6 N -0.54 -24.12 4.67 -874.89 -4.08 -28.20 16 7 C 0.05 1.96 4.93 86.31 0.43 2.39 16 8 C 0.06 2.14 5.62 86.31 0.49 2.63 16 9 N -0.57 -23.70 4.97 -921.93 -4.58 -28.28 16 10 C 0.03 1.09 9.60 127.69 1.23 2.31 16 11 C 0.09 4.33 4.66 86.31 0.40 4.74 16 12 C 0.23 12.40 1.91 44.17 0.08 12.49 16 13 H -0.04 -2.30 8.14 -2.39 -0.02 -2.32 16 14 C -0.52 -29.68 8.02 25.60 0.21 -29.48 16 15 H 0.06 3.31 6.50 -2.91 -0.02 3.29 16 16 C 0.01 0.84 5.30 84.65 0.45 1.29 16 17 N -0.92 -53.62 11.34 21.45 0.24 -53.38 16 18 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 24 H 0.05 1.58 6.47 -2.39 -0.02 1.56 16 25 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 26 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.04 1.19 6.24 -2.39 -0.01 1.17 16 29 H 0.08 2.47 8.06 -2.38 -0.02 2.45 16 30 H 0.06 2.72 6.68 -2.39 -0.02 2.71 16 31 H 0.01 0.30 6.49 -2.39 -0.02 0.29 16 32 H 0.10 2.93 5.99 -2.39 -0.01 2.92 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 2.36 8.13 -2.38 -0.02 2.34 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.08 4.37 6.12 -2.39 -0.01 4.36 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -63.92 311.25 -3.73 -67.65 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.97 Total: 10.03 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.45 Total: 6.28 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -13.18 Total: -130.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.92 -3.73 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250387510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.712 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds