Wall clock time and date at job start Mon Mar 30 2020 03:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 H 1.08998 * 109.47805 * 305.41507 * 3 2 1 5 5 C 1.50699 * 109.47436 * 185.40949 * 3 2 1 6 6 H 1.08000 * 120.00705 * 245.22818 * 5 3 2 7 7 C 1.37887 * 119.99778 * 65.22636 * 5 3 2 8 8 N 1.31514 * 119.99682 * 196.00300 * 7 5 3 9 9 Si 1.86803 * 119.99844 * 16.00345 * 7 5 3 10 10 H 1.48497 * 109.46680 * 91.61353 * 9 7 5 11 11 H 1.48498 * 109.47124 * 211.61178 * 9 7 5 12 12 H 1.48501 * 109.47147 * 331.61388 * 9 7 5 13 13 N 1.46902 * 109.47031 * 65.41578 * 3 2 1 14 14 C 1.46956 * 111.00101 * 38.77887 * 13 3 2 15 15 C 1.53052 * 109.36419 * 176.81493 * 14 13 3 16 16 N 1.46955 * 109.36312 * 58.40084 * 15 14 13 17 17 C 1.46903 * 110.99837 * 176.80972 * 16 15 14 18 18 C 1.46955 * 110.88486 * 300.68106 * 16 15 14 19 19 C 1.46962 * 110.99815 * 274.98469 * 13 3 2 20 20 H 1.08996 * 109.48697 * 63.21745 * 19 13 3 21 21 C 1.53005 * 109.48895 * 303.17590 * 19 13 3 22 22 N 1.46905 * 109.47068 * 77.13392 * 21 19 13 23 23 H 1.09001 * 109.47279 * 43.58774 * 1 2 3 24 24 H 1.09009 * 109.46983 * 163.58651 * 1 2 3 25 25 H 1.08995 * 109.46991 * 283.58489 * 1 2 3 26 26 H 1.09006 * 109.47438 * 240.00980 * 2 1 3 27 27 H 1.08996 * 109.47785 * 120.00023 * 2 1 3 28 28 H 0.97002 * 119.99508 * 180.02562 * 8 7 5 29 29 H 1.08991 * 109.49043 * 296.78383 * 14 13 3 30 30 H 1.09002 * 109.48324 * 56.85001 * 14 13 3 31 31 H 1.09005 * 109.48994 * 298.43580 * 15 14 13 32 32 H 1.09000 * 109.50460 * 178.38518 * 15 14 13 33 33 H 1.08999 * 109.47054 * 183.80442 * 17 16 15 34 34 H 1.09006 * 109.47231 * 303.80464 * 17 16 15 35 35 H 1.09001 * 109.46852 * 63.80320 * 17 16 15 36 36 H 1.09000 * 109.48608 * 299.35547 * 18 16 15 37 37 H 1.08999 * 109.50773 * 179.29990 * 18 16 15 38 38 H 1.08997 * 109.47357 * 197.13742 * 21 19 13 39 39 H 1.08999 * 109.47097 * 317.13841 * 21 19 13 40 40 H 1.00898 * 110.99754 * 62.80016 * 22 21 19 41 41 H 1.00893 * 110.99959 * 186.75280 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5996 1.9837 -0.8375 5 6 3.5409 1.4448 -0.1339 6 1 4.1549 1.8106 0.6758 7 6 4.1306 0.9797 -1.2904 8 7 5.4119 0.6839 -1.3021 9 14 3.1092 0.7699 -2.8403 10 1 3.1706 2.0159 -3.6459 11 1 3.6464 -0.3619 -3.6376 12 1 1.6990 0.4890 -2.4696 13 7 1.6598 2.0962 1.2595 14 6 1.7844 1.1689 2.3927 15 6 1.4569 1.9085 3.6920 16 7 0.0958 2.4567 3.6109 17 6 -0.2843 3.1103 4.8703 18 6 -0.0288 3.3840 2.4777 19 6 0.2987 2.6444 1.1785 20 1 -0.4127 1.8314 1.0336 21 6 0.2093 3.6169 0.0006 22 7 0.1162 2.8588 -1.2543 23 1 -0.3634 0.7444 -0.7085 24 1 -0.3633 -0.9859 -0.2904 25 1 -0.3633 0.2414 0.9989 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 5.8268 0.3571 -2.1157 29 1 1.0899 0.3392 2.2616 30 1 2.8040 0.7863 2.4390 31 1 2.1684 2.7215 3.8369 32 1 1.5206 1.2157 4.5311 33 1 -1.3189 3.4475 4.8068 34 1 -0.1829 2.4018 5.6925 35 1 0.3668 3.9666 5.0462 36 1 0.6658 4.2137 2.6088 37 1 -1.0482 3.7669 2.4312 38 1 -0.6755 4.2434 0.1131 39 1 1.0995 4.2455 -0.0199 40 1 -0.7251 2.3024 -1.2790 41 1 0.1667 3.4736 -2.0527 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251301650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:52 Heat of formation + Delta-G solvation = 43.631876 kcal Electronic energy + Delta-G solvation = -19544.708434 eV Core-core repulsion = 16881.786380 eV Total energy + Delta-G solvation = -2662.922054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47103 -36.24542 -34.22428 -32.24728 -31.21747 -30.16138 -28.40527 -26.33810 -24.74755 -23.33174 -22.52473 -20.92114 -19.79751 -18.74492 -16.51320 -15.86996 -15.40241 -15.04310 -14.91000 -14.61683 -14.15399 -13.81695 -13.49930 -13.20670 -12.61873 -12.52196 -11.99891 -11.91227 -11.71276 -11.55353 -11.38914 -11.18571 -10.83520 -10.61469 -10.51450 -10.50610 -10.15977 -9.70080 -9.63578 -9.20214 -9.08416 -8.37296 -8.11756 -7.53092 -6.97426 -5.86098 -3.73246 3.46782 3.55144 3.64665 4.15479 4.66265 4.80814 4.85049 5.26330 5.36713 5.45927 5.55783 5.57844 5.58616 5.71910 5.80638 5.88050 5.91939 5.95842 6.05282 6.09668 6.14577 6.26014 6.32003 6.44606 6.61966 6.73375 6.86274 6.98124 7.15489 7.25140 7.28585 7.33222 7.44357 7.66848 7.68047 8.12275 8.27102 8.49775 8.97471 9.28768 9.83372 11.27806 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.009159 C = 0.008199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.516061 B = 3056.445161 C = 3414.192156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C 0.142 3.858 4 H 0.124 0.876 5 C -0.491 4.491 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.906 5.906 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.244 1.244 13 N -0.509 5.509 14 C 0.058 3.942 15 C 0.055 3.945 16 N -0.544 5.544 17 C 0.027 3.973 18 C 0.064 3.936 19 C 0.069 3.931 20 H 0.060 0.940 21 C 0.070 3.930 22 N -0.828 5.828 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.258 0.742 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.084 0.916 40 H 0.334 0.666 41 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 4.507 5.910 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.186 4.186 3 C 0.035 3.965 4 H 0.140 0.860 5 C -0.530 4.530 6 H 0.087 0.913 7 C -0.134 4.134 8 N -0.546 5.546 9 Si 0.693 3.307 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.167 1.167 13 N -0.234 5.234 14 C -0.070 4.070 15 C -0.073 4.073 16 N -0.269 5.269 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.041 4.041 20 H 0.077 0.923 21 C -0.061 4.061 22 N -0.360 5.360 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.951 4.108 6.042 14.870 hybrid contribution -1.092 0.281 -0.934 1.464 sum -14.043 4.390 5.108 15.575 Atomic orbital electron populations 1.22281 0.99043 0.99791 1.00552 1.22517 0.92640 1.02693 1.00771 1.20870 0.96551 0.88964 0.90108 0.85955 1.21029 0.89852 1.40232 1.01843 0.91340 1.24863 0.94633 0.95033 0.98822 1.70011 1.11670 1.45243 1.27654 0.87142 0.82782 0.76931 0.83832 1.21263 1.22782 1.16745 1.62432 1.19730 1.36043 1.05156 1.22135 1.01398 0.94068 0.89424 1.22286 0.87743 0.98444 0.98810 1.62140 1.26257 1.35328 1.03133 1.22318 1.00180 0.97552 0.92149 1.22156 0.99660 0.93921 0.90795 1.21934 0.93434 0.96769 0.91955 0.92274 1.21778 1.00164 0.94931 0.89213 1.59046 1.44058 1.28512 1.04337 0.92135 0.95201 0.93265 0.93004 0.93418 0.93270 0.94381 0.89905 0.94387 0.91387 0.91941 0.91745 0.95948 0.94382 0.91663 0.95954 0.89741 0.85128 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.12 37.16 0.30 -2.61 16 2 C -0.15 -3.25 4.18 -26.73 -0.11 -3.37 16 3 C 0.14 3.29 1.20 -68.86 -0.08 3.21 16 4 H 0.12 2.75 2.55 -54.85 -0.14 2.61 16 5 C -0.49 -13.99 8.79 -34.44 -0.30 -14.29 16 6 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 7 C 0.07 1.95 5.32 -17.82 -0.09 1.85 16 8 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 9 Si 0.87 21.80 25.81 -169.99 -4.39 17.41 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.24 -5.69 5.56 56.52 0.31 -5.38 16 13 N -0.51 -10.42 4.36 -219.94 -0.96 -11.38 16 14 C 0.06 1.13 4.22 -3.77 -0.02 1.12 16 15 C 0.06 0.90 5.62 -3.77 -0.02 0.88 16 16 N -0.54 -8.12 4.97 -242.75 -1.21 -9.32 16 17 C 0.03 0.31 9.60 60.07 0.58 0.89 16 18 C 0.06 0.95 4.83 -3.77 -0.02 0.93 16 19 C 0.07 1.15 1.87 -67.65 -0.13 1.03 16 20 H 0.06 1.02 4.25 -51.93 -0.22 0.80 16 21 C 0.07 1.07 5.97 -3.82 -0.02 1.04 16 22 N -0.83 -12.54 5.57 -10.36 -0.06 -12.60 16 23 H 0.06 1.04 4.48 -51.93 -0.23 0.80 16 24 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.05 0.87 4.93 -51.93 -0.26 0.62 16 26 H 0.05 1.24 5.11 -51.93 -0.27 0.97 16 27 H 0.05 1.08 6.08 -51.93 -0.32 0.76 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.04 0.75 5.03 -51.93 -0.26 0.48 16 30 H 0.08 1.80 7.76 -51.93 -0.40 1.39 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.28 8.03 -51.93 -0.42 -0.14 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.33 4.48 7.02 -39.29 -0.28 4.20 16 41 H 0.34 4.44 9.08 -39.30 -0.36 4.08 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -31.59 288.11 -8.00 -39.59 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.59 Total: 8.98 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -1.45 Total: -61.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.39 Total: 17.41 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.59 -8.00 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251301650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.225 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds