Wall clock time and date at job start Mon Mar 30 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53049 * 109.49018 * 239.95137 * 2 1 3 5 5 N 1.46950 * 109.36817 * 298.43336 * 4 2 1 6 6 C 1.46897 * 111.00534 * 176.80941 * 5 4 2 7 7 C 1.52995 * 109.47366 * 190.00082 * 6 5 4 8 8 N 1.46904 * 109.47216 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00099 * 170.00144 * 8 7 6 10 10 C 1.46903 * 110.99787 * 293.95415 * 8 7 6 11 11 C 1.46961 * 110.87943 * 300.68180 * 5 4 2 12 12 C 1.53049 * 109.36494 * 59.31629 * 11 5 4 13 13 H 1.09004 * 109.48991 * 61.56513 * 12 11 5 14 14 C 1.50702 * 109.48751 * 181.60930 * 12 11 5 15 15 H 1.07995 * 119.99891 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99784 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00034 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00087 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.46882 * 90.00787 * 18 16 14 20 20 H 1.48502 * 109.47202 * 210.00552 * 18 16 14 21 21 H 1.48500 * 109.47305 * 330.00752 * 18 16 14 22 22 N 1.46950 * 109.36817 * 301.60020 * 12 11 5 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 26 26 H 1.09004 * 109.48930 * 58.40777 * 4 2 1 27 27 H 1.09009 * 109.48705 * 178.44381 * 4 2 1 28 28 H 1.08998 * 109.47072 * 310.00634 * 6 5 4 29 29 H 1.09001 * 109.46685 * 69.99980 * 6 5 4 30 30 H 1.09007 * 109.47245 * 300.00315 * 7 6 5 31 31 H 1.09001 * 109.47302 * 60.00276 * 7 6 5 32 32 H 1.08998 * 109.47363 * 59.99759 * 9 8 7 33 33 H 1.09002 * 109.47090 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46730 * 299.99899 * 9 8 7 35 35 H 1.09003 * 109.47010 * 60.00093 * 10 8 7 36 36 H 1.09000 * 109.46803 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47221 * 299.99808 * 10 8 7 38 38 H 1.09004 * 109.48667 * 179.28477 * 11 5 4 39 39 H 1.09000 * 109.48915 * 299.34827 * 11 5 4 40 40 H 0.97002 * 120.00166 * 179.97438 * 17 16 14 41 41 H 1.00908 * 110.99861 * 295.45486 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5810 -2.1180 -1.2267 6 6 1.9878 -2.8259 -2.4479 7 6 1.2882 -4.1852 -2.5066 8 7 1.6955 -4.8933 -3.7276 9 6 1.2359 -6.2884 -3.7053 10 6 1.2090 -4.1978 -4.9266 11 6 2.0712 -2.8120 -0.0277 12 6 1.5606 -2.0895 1.2212 13 1 0.4709 -2.1133 1.2351 14 6 2.0941 -2.7756 2.4524 15 1 2.7338 -3.6402 2.3543 16 6 1.7655 -2.2995 3.7039 17 7 2.2315 -2.8979 4.7784 18 14 0.6596 -0.8036 3.8735 19 1 -0.7579 -1.2411 3.9406 20 1 1.0097 -0.0673 5.1147 21 1 0.8479 0.0867 2.7000 22 7 2.0202 -0.6940 1.1991 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5131 -0.8904 25 1 -0.3634 0.5146 0.8896 26 1 1.6545 -0.2264 -2.1394 27 1 3.1303 -0.6983 -1.2629 28 1 1.7082 -2.2353 -3.3204 29 1 3.0678 -2.9730 -2.4398 30 1 1.5679 -4.7758 -1.6341 31 1 0.2082 -4.0380 -2.5147 32 1 0.1485 -6.3116 -3.6341 33 1 1.5513 -6.7895 -4.6205 34 1 1.6674 -6.7993 -2.8445 35 1 1.6209 -3.1890 -4.9537 36 1 1.5249 -4.7429 -5.8161 37 1 0.1206 -4.1453 -4.8997 38 1 1.7072 -3.8395 -0.0278 39 1 3.1612 -2.8120 -0.0276 40 1 2.0007 -2.5627 5.6589 41 1 3.0262 -0.6436 1.2601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251550135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:36 Heat of formation + Delta-G solvation = 25.609928 kcal Electronic energy + Delta-G solvation = -18596.487691 eV Core-core repulsion = 15932.784146 eV Total energy + Delta-G solvation = -2663.703545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.13893 -37.42095 -34.23980 -32.78509 -30.83773 -29.08026 -27.67931 -27.14667 -25.31866 -24.68889 -22.31274 -21.14542 -20.45319 -18.50839 -16.90832 -15.96733 -15.52117 -15.06186 -14.81012 -14.53339 -14.26948 -13.91922 -13.63893 -13.41975 -13.00413 -12.54511 -12.45821 -12.36016 -11.93675 -11.75027 -11.54629 -11.40438 -11.07825 -10.98892 -10.82823 -10.67797 -10.54523 -9.94738 -9.80969 -9.64827 -9.05869 -8.47102 -8.42232 -7.90456 -6.92904 -5.97424 -4.06733 3.55414 3.64772 3.77251 3.97761 4.50505 4.75080 4.96698 5.05900 5.08606 5.27991 5.29647 5.42556 5.48183 5.52336 5.59221 5.62002 5.67913 5.78320 5.78992 5.83750 5.91546 6.04273 6.06779 6.10930 6.24595 6.30415 6.35782 6.59929 6.71181 6.87873 6.93635 6.96274 7.06813 7.50370 7.54242 7.75360 8.24577 8.27586 8.70869 9.01985 9.67926 11.12381 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.006709 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.391590 B = 4172.366668 C = 4785.303605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.069 0.931 4 C 0.030 3.970 5 N -0.537 5.537 6 C 0.061 3.939 7 C 0.058 3.942 8 N -0.550 5.550 9 C 0.026 3.974 10 C 0.023 3.977 11 C 0.038 3.962 12 C 0.189 3.811 13 H 0.049 0.951 14 C -0.527 4.527 15 H 0.068 0.932 16 C 0.086 3.914 17 N -0.902 5.902 18 Si 0.858 3.142 19 H -0.296 1.296 20 H -0.306 1.306 21 H -0.184 1.184 22 N -0.672 5.672 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 1.135 -16.972 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.031 4.031 3 H 0.087 0.913 4 C -0.101 4.101 5 N -0.262 5.262 6 C -0.067 4.067 7 C -0.070 4.070 8 N -0.274 5.274 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.091 4.091 12 C 0.081 3.919 13 H 0.067 0.933 14 C -0.566 4.566 15 H 0.086 0.914 16 C -0.118 4.118 17 N -0.539 5.539 18 Si 0.685 3.315 19 H -0.224 1.224 20 H -0.234 1.234 21 H -0.105 1.105 22 N -0.303 5.303 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.953 1.373 -16.391 16.712 hybrid contribution 0.129 0.112 -0.420 0.453 sum -2.824 1.484 -16.811 17.111 Atomic orbital electron populations 1.21731 0.94789 1.02743 0.99875 1.21604 0.96344 0.96725 0.88451 0.91327 1.22816 0.96995 0.89886 1.00366 1.62123 1.59984 1.01845 1.02202 1.21988 0.97665 0.94019 0.93057 1.22127 0.98091 0.94830 0.91974 1.61935 1.60192 1.02574 1.02721 1.22359 0.97996 0.89237 1.02645 1.22420 0.97744 0.99637 0.92775 1.22887 0.96952 0.98761 0.90470 1.19610 0.96879 0.83656 0.91723 0.93334 1.20852 1.32801 1.14188 0.88745 0.91425 1.24974 0.94963 0.96662 0.95232 1.69964 1.44772 1.41035 0.98100 0.87335 0.78966 0.85644 0.79532 1.22386 1.23386 1.10510 1.61846 1.15781 1.17707 1.34926 0.91294 0.93985 0.92949 0.91778 0.95698 0.91690 0.94674 0.90260 0.93970 0.95663 0.91585 0.91197 0.91286 0.91744 0.95664 0.91090 0.95660 0.92871 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.70 37.16 0.32 -1.93 16 2 C 0.08 1.36 3.68 -67.66 -0.25 1.11 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.46 5.03 -3.77 -0.02 0.44 16 5 N -0.54 -9.01 4.03 -234.47 -0.94 -9.95 16 6 C 0.06 0.89 4.88 -3.83 -0.02 0.88 16 7 C 0.06 0.81 4.89 -3.82 -0.02 0.79 16 8 N -0.55 -6.84 5.02 -251.25 -1.26 -8.10 16 9 C 0.03 0.28 9.57 60.06 0.57 0.85 16 10 C 0.02 0.23 9.32 60.07 0.56 0.79 16 11 C 0.04 0.76 4.63 -3.77 -0.02 0.74 16 12 C 0.19 4.28 1.57 -68.81 -0.11 4.17 16 13 H 0.05 1.17 5.77 -51.93 -0.30 0.87 16 14 C -0.53 -14.54 9.27 -34.44 -0.32 -14.86 16 15 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 16 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 17 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 18 Si 0.86 21.49 26.94 -169.99 -4.58 16.91 16 19 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 21 H -0.18 -4.22 4.37 56.52 0.25 -3.98 16 22 N -0.67 -13.84 2.98 -100.82 -0.30 -14.14 16 23 H 0.07 1.28 5.94 -51.93 -0.31 0.97 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.92 7.51 -51.93 -0.39 0.53 16 26 H 0.06 0.89 8.07 -51.93 -0.42 0.48 16 27 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 29 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.08 1.22 6.41 -51.93 -0.33 0.88 16 31 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 34 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 36 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 1.43 6.34 -51.93 -0.33 1.10 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.33 6.82 8.79 -39.29 -0.35 6.48 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -29.87 306.01 -8.54 -38.41 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.45 Total: 4.00 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.61 Total: -4.64 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -1.73 Total: -59.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.58 Total: 16.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.87 -8.54 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251550135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.016 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds