Wall clock time and date at job start Mon Mar 30 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53049 * 109.49018 * 239.95137 * 2 1 3 5 5 N 1.46950 * 109.36817 * 298.43336 * 4 2 1 6 6 C 1.46897 * 111.00534 * 176.80941 * 5 4 2 7 7 C 1.52995 * 109.47366 * 190.00082 * 6 5 4 8 8 N 1.46904 * 109.47216 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00099 * 170.00144 * 8 7 6 10 10 C 1.46903 * 110.99787 * 293.95415 * 8 7 6 11 11 C 1.46961 * 110.87943 * 300.68180 * 5 4 2 12 12 C 1.53049 * 109.36494 * 59.31629 * 11 5 4 13 13 H 1.09004 * 109.48991 * 61.56513 * 12 11 5 14 14 C 1.50702 * 109.48751 * 181.60930 * 12 11 5 15 15 H 1.07995 * 119.99891 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99784 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00034 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00087 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.46882 * 90.00787 * 18 16 14 20 20 H 1.48502 * 109.47202 * 210.00552 * 18 16 14 21 21 H 1.48500 * 109.47305 * 330.00752 * 18 16 14 22 22 N 1.46950 * 109.36817 * 301.60020 * 12 11 5 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 26 26 H 1.09004 * 109.48930 * 58.40777 * 4 2 1 27 27 H 1.09009 * 109.48705 * 178.44381 * 4 2 1 28 28 H 1.08998 * 109.47072 * 310.00634 * 6 5 4 29 29 H 1.09001 * 109.46685 * 69.99980 * 6 5 4 30 30 H 1.09007 * 109.47245 * 300.00315 * 7 6 5 31 31 H 1.09001 * 109.47302 * 60.00276 * 7 6 5 32 32 H 1.08998 * 109.47363 * 59.99759 * 9 8 7 33 33 H 1.09002 * 109.47090 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46730 * 299.99899 * 9 8 7 35 35 H 1.09003 * 109.47010 * 60.00093 * 10 8 7 36 36 H 1.09000 * 109.46803 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47221 * 299.99808 * 10 8 7 38 38 H 1.09004 * 109.48667 * 179.28477 * 11 5 4 39 39 H 1.09000 * 109.48915 * 299.34827 * 11 5 4 40 40 H 0.97002 * 120.00166 * 179.97438 * 17 16 14 41 41 H 1.00908 * 110.99861 * 295.45486 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5810 -2.1180 -1.2267 6 6 1.9878 -2.8259 -2.4479 7 6 1.2882 -4.1852 -2.5066 8 7 1.6955 -4.8933 -3.7276 9 6 1.2359 -6.2884 -3.7053 10 6 1.2090 -4.1978 -4.9266 11 6 2.0712 -2.8120 -0.0277 12 6 1.5606 -2.0895 1.2212 13 1 0.4709 -2.1133 1.2351 14 6 2.0941 -2.7756 2.4524 15 1 2.7338 -3.6402 2.3543 16 6 1.7655 -2.2995 3.7039 17 7 2.2315 -2.8979 4.7784 18 14 0.6596 -0.8036 3.8735 19 1 -0.7579 -1.2411 3.9406 20 1 1.0097 -0.0673 5.1147 21 1 0.8479 0.0867 2.7000 22 7 2.0202 -0.6940 1.1991 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5131 -0.8904 25 1 -0.3634 0.5146 0.8896 26 1 1.6545 -0.2264 -2.1394 27 1 3.1303 -0.6983 -1.2629 28 1 1.7082 -2.2353 -3.3204 29 1 3.0678 -2.9730 -2.4398 30 1 1.5679 -4.7758 -1.6341 31 1 0.2082 -4.0380 -2.5147 32 1 0.1485 -6.3116 -3.6341 33 1 1.5513 -6.7895 -4.6205 34 1 1.6674 -6.7993 -2.8445 35 1 1.6209 -3.1890 -4.9537 36 1 1.5249 -4.7429 -5.8161 37 1 0.1206 -4.1453 -4.8997 38 1 1.7072 -3.8395 -0.0278 39 1 3.1612 -2.8120 -0.0276 40 1 2.0007 -2.5627 5.6589 41 1 3.0262 -0.6436 1.2601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251550135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:35 Heat of formation + Delta-G solvation = 2.816253 kcal Electronic energy + Delta-G solvation = -18597.476099 eV Core-core repulsion = 15932.784146 eV Total energy + Delta-G solvation = -2664.691953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57327 -38.47953 -35.69430 -34.69620 -32.66233 -30.25638 -28.68024 -28.48198 -27.19713 -25.89426 -23.48873 -22.89701 -21.60304 -20.01473 -18.93137 -17.34514 -16.65486 -16.44322 -16.14700 -15.84996 -15.62960 -15.48483 -15.10334 -14.85566 -14.42914 -14.23292 -13.89374 -13.28628 -13.18367 -12.90592 -12.82581 -12.63080 -12.59541 -12.48670 -12.25788 -12.18666 -11.87178 -11.77282 -11.53195 -11.26879 -11.09472 -10.66726 -9.37973 -9.28349 -8.58255 -8.22468 -6.34729 1.52902 1.59099 1.97182 2.63573 2.69203 3.13420 3.31996 3.74092 3.84538 4.13627 4.21598 4.24438 4.31746 4.36139 4.44871 4.49584 4.55707 4.57263 4.65958 4.71253 4.79547 4.82766 4.89270 4.93441 4.97099 5.00645 5.05451 5.12227 5.28220 5.32906 5.53964 5.68393 5.93588 6.05288 6.08294 6.19522 6.26702 6.48248 6.82760 6.90657 7.43626 8.90903 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.006709 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.391590 B = 4172.366668 C = 4785.303605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.536 5.536 6 C 0.068 3.932 7 C 0.065 3.935 8 N -0.562 5.562 9 C 0.025 3.975 10 C 0.022 3.978 11 C 0.053 3.947 12 C 0.201 3.799 13 H 0.041 0.959 14 C -0.526 4.526 15 H 0.025 0.975 16 C 0.029 3.971 17 N -0.953 5.953 18 Si 0.921 3.079 19 H -0.303 1.303 20 H -0.318 1.318 21 H -0.146 1.146 22 N -0.682 5.682 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.025 0.975 28 H 0.088 0.912 29 H 0.025 0.975 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.059 0.941 39 H 0.010 0.990 40 H 0.261 0.739 41 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 3.159 -19.863 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.034 4.034 3 H 0.113 0.887 4 C -0.098 4.098 5 N -0.261 5.261 6 C -0.060 4.060 7 C -0.063 4.063 8 N -0.287 5.287 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.077 4.077 12 C 0.092 3.908 13 H 0.059 0.941 14 C -0.565 4.565 15 H 0.044 0.956 16 C -0.169 4.169 17 N -0.593 5.593 18 Si 0.746 3.254 19 H -0.231 1.231 20 H -0.246 1.246 21 H -0.067 1.067 22 N -0.313 5.313 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.827 3.399 -19.330 19.996 hybrid contribution 0.445 -0.602 0.388 0.843 sum -3.382 2.797 -18.943 19.444 Atomic orbital electron populations 1.21713 0.94314 1.01741 1.01146 1.21792 0.96651 0.97615 0.87295 0.88675 1.22836 0.97125 0.88878 1.00937 1.62097 1.59824 1.02546 1.01652 1.21988 0.97065 0.94401 0.92558 1.21964 0.97628 0.94502 0.92256 1.61947 1.60695 1.03324 1.02716 1.22404 0.98126 0.88463 1.03316 1.22482 0.97922 0.99862 0.92282 1.22523 0.95720 0.98259 0.91184 1.19244 0.95949 0.84985 0.90627 0.94149 1.21152 1.31280 1.13050 0.90996 0.95647 1.25857 0.96530 0.99685 0.94863 1.70109 1.47205 1.43241 0.98709 0.86469 0.76186 0.82665 0.80036 1.23128 1.24614 1.06664 1.61528 1.15864 1.16109 1.37774 0.93376 0.90839 0.93638 0.88647 0.95687 0.89346 0.95626 0.92497 0.94412 0.95402 0.89672 0.92019 0.90941 0.90089 0.95398 0.92259 0.97200 0.93026 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.70 71.98 0.63 -3.28 16 2 C 0.08 2.32 3.68 44.92 0.17 2.48 16 3 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.03 0.88 5.03 86.31 0.43 1.31 16 5 N -0.54 -16.87 4.03 -895.73 -3.61 -20.47 16 6 C 0.07 1.83 4.88 86.30 0.42 2.26 16 7 C 0.06 1.75 4.89 86.30 0.42 2.17 16 8 N -0.56 -13.00 5.02 -948.82 -4.76 -17.76 16 9 C 0.02 0.50 9.57 127.69 1.22 1.72 16 10 C 0.02 0.40 9.32 127.69 1.19 1.59 16 11 C 0.05 2.09 4.63 86.31 0.40 2.49 16 12 C 0.20 9.03 1.57 44.18 0.07 9.10 16 13 H 0.04 1.92 5.77 -2.38 -0.01 1.91 16 14 C -0.53 -29.94 9.27 25.60 0.24 -29.71 16 15 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 16 C 0.03 1.72 5.47 84.66 0.46 2.18 16 17 N -0.95 -61.13 13.96 21.45 0.30 -60.84 16 18 Si 0.92 44.88 26.94 68.60 1.85 46.73 16 19 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 20 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 21 H -0.15 -6.23 4.37 99.48 0.43 -5.80 16 22 N -0.68 -26.74 2.98 -472.89 -1.41 -28.15 16 23 H 0.05 1.64 5.94 -2.39 -0.01 1.62 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.41 7.51 -2.38 -0.02 1.39 16 26 H 0.10 2.13 8.07 -2.38 -0.02 2.11 16 27 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.09 2.02 6.44 -2.39 -0.02 2.00 16 29 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.06 1.77 6.41 -2.38 -0.02 1.76 16 31 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 35 H 0.07 1.23 6.47 -2.39 -0.02 1.21 16 36 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 37 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 2.46 6.34 -2.39 -0.02 2.44 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.33 13.14 8.79 -89.69 -0.79 12.35 16 Total: -1.00 -66.28 306.01 -2.06 -68.34 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.07 Total: 19.83 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.65 Total: -7.69 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -9.48 Total: -127.22 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.85 Total: 46.73 kcal Total: -66.28 -2.06 -68.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251550135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.156 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds