Wall clock time and date at job start Mon Mar 30 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.49264 * 2 1 4 4 C 1.53051 * 109.48933 * 239.95064 * 2 1 3 5 5 N 1.46954 * 109.36556 * 181.60984 * 4 2 1 6 6 C 1.46901 * 111.00285 * 183.19021 * 5 4 2 7 7 C 1.53000 * 109.46769 * 66.04624 * 6 5 4 8 8 N 1.46901 * 109.46769 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.05138 * 8 7 6 10 10 C 1.46903 * 110.99790 * 190.00085 * 8 7 6 11 11 C 1.46958 * 110.87752 * 59.32370 * 5 4 2 12 12 H 1.09000 * 109.48656 * 60.64609 * 11 5 4 13 13 C 1.50702 * 109.48725 * 180.71186 * 11 5 4 14 14 H 1.07999 * 120.00134 * 359.97438 * 13 11 5 15 15 C 1.37876 * 119.99750 * 180.02562 * 13 11 5 16 16 N 1.31515 * 120.00385 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99869 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46966 * 120.00280 * 17 15 13 20 20 H 1.48506 * 109.47420 * 240.00035 * 17 15 13 21 21 C 1.53046 * 109.36500 * 300.68042 * 11 5 4 22 22 N 1.46954 * 109.36869 * 58.39980 * 21 11 5 23 23 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47215 * 300.04930 * 1 2 3 25 25 H 1.09006 * 109.46822 * 60.04374 * 1 2 3 26 26 H 1.09005 * 109.48595 * 61.64433 * 4 2 1 27 27 H 1.09003 * 109.49076 * 301.58036 * 4 2 1 28 28 H 1.09001 * 109.46874 * 306.04904 * 6 5 4 29 29 H 1.08992 * 109.47407 * 186.04922 * 6 5 4 30 30 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 31 31 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 32 32 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 33 33 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 35 35 H 1.08998 * 109.46995 * 60.00240 * 10 8 7 36 36 H 1.09001 * 109.46977 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47089 * 300.00145 * 10 8 7 38 38 H 0.96998 * 120.00029 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.49230 * 298.43147 * 21 11 5 40 40 H 1.09007 * 109.50842 * 178.38320 * 21 11 5 41 41 H 1.00892 * 111.00473 * 176.80954 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5097 -0.7547 -1.2268 6 6 4.0412 -1.3744 -2.4481 7 6 3.7146 -0.4895 -3.6526 8 7 4.2455 -1.1095 -4.8740 9 6 3.5519 -2.3705 -5.1685 10 6 4.1628 -0.1848 -6.0125 11 6 4.0003 -1.4484 -0.0278 12 1 3.6366 -2.4759 -0.0278 13 6 5.5074 -1.4480 -0.0280 14 1 6.0471 -0.9798 -0.8379 15 6 6.1970 -2.0463 1.0051 16 7 5.5398 -2.6178 1.9905 17 14 8.0650 -2.0464 1.0044 18 1 8.5597 -1.3444 -0.2071 19 1 8.5605 -1.3479 2.2177 20 1 8.5600 -3.4465 1.0026 21 6 3.4897 -0.7260 1.2211 22 7 2.0207 -0.6937 1.1990 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5146 0.8895 25 1 -0.3633 0.5132 -0.8904 26 1 1.7019 -0.1929 -2.1394 27 1 1.6547 -1.7418 -1.2627 28 1 3.5872 -2.3560 -2.5845 29 1 5.1220 -1.4833 -2.3595 30 1 2.6336 -0.3806 -3.7412 31 1 4.1686 0.4921 -3.5162 32 1 2.4886 -2.1761 -5.3090 33 1 3.9641 -2.8082 -6.0777 34 1 3.6880 -3.0627 -4.3376 35 1 4.7431 0.7119 -5.7951 36 1 4.5629 -0.6689 -6.9034 37 1 3.1217 0.0887 -6.1835 38 1 6.0251 -3.0390 2.7171 39 1 3.8757 0.2933 1.2351 40 1 3.8285 -1.2552 2.1118 41 1 1.6557 -0.2681 2.0378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251820650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:00 Heat of formation + Delta-G solvation = 16.816101 kcal Electronic energy + Delta-G solvation = -18604.316052 eV Core-core repulsion = 15940.231178 eV Total energy + Delta-G solvation = -2664.084874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.56918 -37.05095 -34.12174 -32.98984 -30.77580 -28.84554 -27.43885 -27.12146 -24.89283 -23.98116 -22.41873 -20.75483 -20.07006 -18.69564 -16.67340 -15.60773 -15.24842 -14.92550 -14.71656 -14.45519 -14.00905 -13.94527 -13.27250 -13.03959 -12.73931 -12.60987 -12.23363 -11.97947 -11.74771 -11.60522 -11.53194 -11.43612 -10.94933 -10.81898 -10.65472 -10.48267 -10.31374 -10.11437 -9.92749 -9.47629 -8.89039 -8.46763 -8.12907 -7.56374 -7.12772 -6.01793 -4.06279 3.31173 3.39254 3.44821 4.11642 4.42455 4.99159 5.02914 5.30290 5.31739 5.35797 5.48043 5.51029 5.52483 5.73440 5.75918 5.85277 5.90354 5.94566 5.97409 6.04376 6.14892 6.17286 6.35169 6.39183 6.54578 6.65268 6.76672 6.87882 6.99922 7.23624 7.30441 7.41731 7.62653 7.80259 7.93601 8.15204 8.23677 8.37707 8.63659 9.02309 9.59071 11.04985 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.009580 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.891956 B = 2921.950517 C = 4512.256420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.034 0.966 4 C 0.063 3.937 5 N -0.538 5.538 6 C 0.069 3.931 7 C 0.059 3.941 8 N -0.546 5.546 9 C 0.023 3.977 10 C 0.028 3.972 11 C 0.225 3.775 12 H 0.007 0.993 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.069 3.931 22 N -0.692 5.692 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.019 0.981 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.012 0.988 40 H 0.107 0.893 41 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 3.949 -8.987 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.052 0.948 4 C -0.066 4.066 5 N -0.263 5.263 6 C -0.060 4.060 7 C -0.069 4.069 8 N -0.271 5.271 9 C -0.125 4.125 10 C -0.121 4.121 11 C 0.119 3.881 12 H 0.025 0.975 13 C -0.545 4.545 14 H 0.085 0.915 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.060 4.060 22 N -0.323 5.323 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.125 0.875 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.034 3.595 -8.999 11.416 hybrid contribution -0.017 0.266 0.152 0.306 sum -6.051 3.860 -8.847 11.393 Atomic orbital electron populations 1.21787 0.95541 1.01910 1.00718 1.21427 0.93490 0.95608 0.91972 0.94778 1.22097 0.90220 0.98198 0.96038 1.62132 1.05235 1.55448 1.03475 1.21929 1.02630 0.93491 0.87917 1.22219 0.96530 0.98908 0.89196 1.61879 1.56522 1.04999 1.03654 1.22425 0.95541 0.92592 1.01970 1.22341 0.99303 0.96799 0.93628 1.19211 0.94200 0.91116 0.83609 0.97543 1.21203 0.90326 1.35590 1.07386 0.91520 1.24958 0.98598 0.95108 0.95483 1.69895 1.35094 1.37212 1.10774 0.86465 0.85486 0.77638 0.78017 1.19608 1.21091 1.21095 1.22291 0.82428 0.98188 1.03091 1.60764 1.12008 1.56614 1.02905 0.92237 0.93131 0.92955 0.92387 0.95533 0.96326 0.88540 0.95644 0.90413 0.96177 0.91884 0.90781 0.91447 0.91781 0.96189 0.92941 0.96996 0.87525 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.47 37.16 0.35 -1.68 16 2 C 0.09 1.56 3.19 -67.65 -0.22 1.34 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.06 1.22 4.69 -3.77 -0.02 1.20 16 5 N -0.54 -11.84 4.52 -227.88 -1.03 -12.87 16 6 C 0.07 1.39 4.67 -3.82 -0.02 1.38 16 7 C 0.06 0.99 4.89 -3.82 -0.02 0.98 16 8 N -0.55 -8.29 5.02 -251.25 -1.26 -9.55 16 9 C 0.02 0.31 9.32 60.07 0.56 0.87 16 10 C 0.03 0.34 9.57 60.07 0.57 0.91 16 11 C 0.23 5.77 1.94 -68.81 -0.13 5.63 16 12 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 13 C -0.51 -13.84 7.80 -34.44 -0.27 -14.10 16 14 H 0.07 1.84 6.51 -52.49 -0.34 1.50 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.24 11.35 55.43 0.63 -24.61 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.07 1.67 5.76 -3.77 -0.02 1.65 16 22 N -0.69 -14.20 6.55 -106.58 -0.70 -14.90 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.99 6.33 -51.93 -0.33 0.67 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.38 6.53 -51.93 -0.34 0.04 16 29 H 0.10 2.19 5.99 -51.93 -0.31 1.88 16 30 H 0.03 0.41 6.47 -51.93 -0.34 0.08 16 31 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 34 H 0.07 1.09 6.47 -51.93 -0.34 0.75 16 35 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 2.86 6.13 -51.93 -0.32 2.55 16 41 H 0.32 5.89 8.83 -39.30 -0.35 5.54 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -28.53 312.18 -9.26 -37.78 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.28 Total: 3.39 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.70 Total: -0.26 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -2.36 Total: -61.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.53 -9.26 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251820650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.601 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds