Wall clock time and date at job start Mon Mar 30 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.49264 * 2 1 4 4 C 1.53051 * 109.48933 * 239.95064 * 2 1 3 5 5 N 1.46954 * 109.36556 * 181.60984 * 4 2 1 6 6 C 1.46901 * 111.00285 * 183.19021 * 5 4 2 7 7 C 1.53000 * 109.46769 * 66.04624 * 6 5 4 8 8 N 1.46901 * 109.46769 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.05138 * 8 7 6 10 10 C 1.46903 * 110.99790 * 190.00085 * 8 7 6 11 11 C 1.46958 * 110.87752 * 59.32370 * 5 4 2 12 12 H 1.09000 * 109.48656 * 60.64609 * 11 5 4 13 13 C 1.50702 * 109.48725 * 180.71186 * 11 5 4 14 14 H 1.07999 * 120.00134 * 359.97438 * 13 11 5 15 15 C 1.37876 * 119.99750 * 180.02562 * 13 11 5 16 16 N 1.31515 * 120.00385 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99869 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46966 * 120.00280 * 17 15 13 20 20 H 1.48506 * 109.47420 * 240.00035 * 17 15 13 21 21 C 1.53046 * 109.36500 * 300.68042 * 11 5 4 22 22 N 1.46954 * 109.36869 * 58.39980 * 21 11 5 23 23 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47215 * 300.04930 * 1 2 3 25 25 H 1.09006 * 109.46822 * 60.04374 * 1 2 3 26 26 H 1.09005 * 109.48595 * 61.64433 * 4 2 1 27 27 H 1.09003 * 109.49076 * 301.58036 * 4 2 1 28 28 H 1.09001 * 109.46874 * 306.04904 * 6 5 4 29 29 H 1.08992 * 109.47407 * 186.04922 * 6 5 4 30 30 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 31 31 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 32 32 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 33 33 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 35 35 H 1.08998 * 109.46995 * 60.00240 * 10 8 7 36 36 H 1.09001 * 109.46977 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47089 * 300.00145 * 10 8 7 38 38 H 0.96998 * 120.00029 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.49230 * 298.43147 * 21 11 5 40 40 H 1.09007 * 109.50842 * 178.38320 * 21 11 5 41 41 H 1.00892 * 111.00473 * 176.80954 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5097 -0.7547 -1.2268 6 6 4.0412 -1.3744 -2.4481 7 6 3.7146 -0.4895 -3.6526 8 7 4.2455 -1.1095 -4.8740 9 6 3.5519 -2.3705 -5.1685 10 6 4.1628 -0.1848 -6.0125 11 6 4.0003 -1.4484 -0.0278 12 1 3.6366 -2.4759 -0.0278 13 6 5.5074 -1.4480 -0.0280 14 1 6.0471 -0.9798 -0.8379 15 6 6.1970 -2.0463 1.0051 16 7 5.5398 -2.6178 1.9905 17 14 8.0650 -2.0464 1.0044 18 1 8.5597 -1.3444 -0.2071 19 1 8.5605 -1.3479 2.2177 20 1 8.5600 -3.4465 1.0026 21 6 3.4897 -0.7260 1.2211 22 7 2.0207 -0.6937 1.1990 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5146 0.8895 25 1 -0.3633 0.5132 -0.8904 26 1 1.7019 -0.1929 -2.1394 27 1 1.6547 -1.7418 -1.2627 28 1 3.5872 -2.3560 -2.5845 29 1 5.1220 -1.4833 -2.3595 30 1 2.6336 -0.3806 -3.7412 31 1 4.1686 0.4921 -3.5162 32 1 2.4886 -2.1761 -5.3090 33 1 3.9641 -2.8082 -6.0777 34 1 3.6880 -3.0627 -4.3376 35 1 4.7431 0.7119 -5.7951 36 1 4.5629 -0.6689 -6.9034 37 1 3.1217 0.0887 -6.1835 38 1 6.0251 -3.0390 2.7171 39 1 3.8757 0.2933 1.2351 40 1 3.8285 -1.2552 2.1118 41 1 1.6557 -0.2681 2.0378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251820650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:59 Heat of formation + Delta-G solvation = -5.715796 kcal Electronic energy + Delta-G solvation = -18605.293108 eV Core-core repulsion = 15940.231178 eV Total energy + Delta-G solvation = -2665.061930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23461 -38.33506 -35.78172 -34.92158 -32.53361 -30.35028 -28.85602 -28.46088 -26.39478 -25.86643 -23.86074 -22.41366 -21.51319 -20.46360 -18.65920 -17.37582 -16.56199 -16.39968 -16.31402 -15.90150 -15.63834 -15.50755 -14.95038 -14.59859 -14.35808 -14.00336 -13.79242 -13.24137 -13.21078 -13.07623 -12.78326 -12.62984 -12.56589 -12.53178 -12.30683 -12.13048 -11.98212 -11.87441 -11.72238 -11.21913 -10.88220 -10.56434 -9.32439 -9.24282 -8.95157 -8.13299 -6.25493 1.40666 1.42503 1.55049 2.41328 2.86765 3.12459 3.47398 3.51783 4.03014 4.07725 4.15472 4.28922 4.36650 4.40555 4.48272 4.58053 4.67410 4.70288 4.73919 4.76636 4.79483 4.90958 4.99038 5.00921 5.02332 5.07571 5.10301 5.20794 5.33709 5.48991 5.63460 5.69075 6.02400 6.12058 6.15416 6.27478 6.36540 6.68272 6.75937 6.89824 7.43782 8.92910 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.009580 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.891956 B = 2921.950517 C = 4512.256420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.083 3.917 3 H 0.033 0.967 4 C 0.063 3.937 5 N -0.543 5.543 6 C 0.075 3.925 7 C 0.076 3.924 8 N -0.566 5.566 9 C 0.025 3.975 10 C 0.029 3.971 11 C 0.233 3.767 12 H -0.041 1.041 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.084 3.916 22 N -0.696 5.696 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.263 0.737 39 H -0.001 1.001 40 H 0.078 0.922 41 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 5.099 -10.426 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.027 4.027 3 H 0.051 0.949 4 C -0.065 4.065 5 N -0.268 5.268 6 C -0.053 4.053 7 C -0.052 4.052 8 N -0.291 5.291 9 C -0.123 4.123 10 C -0.119 4.119 11 C 0.125 3.875 12 H -0.023 1.023 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.046 4.046 22 N -0.328 5.328 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.096 0.904 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.844 4.757 -10.456 13.371 hybrid contribution 0.192 -0.117 0.553 0.597 sum -6.652 4.640 -9.902 12.800 Atomic orbital electron populations 1.21707 0.91907 1.02316 1.02905 1.21587 0.96272 0.94753 0.90122 0.94935 1.22235 0.88195 0.97998 0.98090 1.62132 1.07271 1.54541 1.02818 1.21834 1.00462 0.94086 0.88932 1.21941 0.97127 0.97631 0.88510 1.61834 1.57070 1.06106 1.04101 1.22419 0.96263 0.91631 1.02026 1.22400 1.00237 0.96393 0.92878 1.18944 0.93540 0.89060 0.85922 1.02314 1.21412 0.91523 1.35825 1.07316 0.92307 1.25721 1.03010 0.94675 0.95069 1.70024 1.36727 1.37638 1.11217 0.85473 0.80120 0.77717 0.78146 1.19288 1.20329 1.20648 1.21863 0.84971 0.96544 1.01181 1.60668 1.09491 1.57831 1.04838 0.92690 0.91412 0.90362 0.89435 0.96977 0.97280 0.91686 0.94462 0.90764 0.95113 0.89790 0.92885 0.91266 0.90020 0.95038 0.92789 0.98241 0.90391 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.47 71.98 0.68 -2.65 16 2 C 0.08 2.89 3.19 44.92 0.14 3.03 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.06 2.38 4.69 86.31 0.40 2.79 16 5 N -0.54 -24.30 4.52 -874.88 -3.95 -28.25 16 6 C 0.08 3.12 4.67 86.30 0.40 3.52 16 7 C 0.08 2.47 4.89 86.30 0.42 2.89 16 8 N -0.57 -16.31 5.02 -948.82 -4.76 -21.07 16 9 C 0.02 0.63 9.32 127.69 1.19 1.82 16 10 C 0.03 0.62 9.57 127.69 1.22 1.84 16 11 C 0.23 12.42 1.94 44.17 0.09 12.50 16 12 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 13 C -0.52 -29.59 7.80 25.60 0.20 -29.39 16 14 H 0.06 3.36 6.51 -2.91 -0.02 3.34 16 15 C 0.01 0.81 5.30 84.65 0.45 1.26 16 16 N -0.92 -53.54 11.35 21.45 0.24 -53.29 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.08 4.23 5.76 86.31 0.50 4.72 16 22 N -0.70 -28.55 6.55 -491.13 -3.21 -31.77 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.09 2.78 6.33 -2.38 -0.02 2.76 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.01 0.39 6.53 -2.39 -0.02 0.37 16 29 H 0.06 3.08 5.99 -2.39 -0.01 3.07 16 30 H 0.04 1.12 6.47 -2.39 -0.02 1.10 16 31 H 0.07 2.46 8.06 -2.39 -0.02 2.44 16 32 H 0.03 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.77 8.12 -2.38 -0.02 1.75 16 34 H 0.05 1.56 6.47 -2.39 -0.02 1.54 16 35 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.08 1.47 8.12 -2.39 -0.02 1.46 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.08 4.36 6.13 -2.38 -0.01 4.35 16 41 H 0.34 12.09 8.83 -89.70 -0.79 11.29 16 Total: -1.00 -63.54 312.18 -3.77 -67.30 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.20 Total: 18.18 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.70 Total: 2.34 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -11.69 Total: -134.38 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -63.54 -3.77 -67.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251820650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.587 kcal (2) G-P(sol) polarization free energy of solvation -63.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds