Wall clock time and date at job start Mon Mar 30 2020 03:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 110.99857 * 2 1 4 4 C 1.53003 * 109.47339 * 293.95600 * 3 2 1 5 5 C 1.53001 * 109.47062 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46980 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99533 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00113 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46867 * 90.00340 * 10 8 6 12 12 H 1.48499 * 109.46954 * 210.00355 * 10 8 6 13 13 H 1.48499 * 109.46794 * 330.00499 * 10 8 6 14 14 C 1.46902 * 111.00051 * 123.95354 * 2 1 3 15 15 H 1.09000 * 109.47318 * 291.48322 * 14 2 1 16 16 C 1.53005 * 109.47062 * 51.48149 * 14 2 1 17 17 C 1.52990 * 109.47192 * 180.02562 * 16 14 2 18 18 C 1.53004 * 109.47260 * 299.99785 * 17 16 14 19 19 C 1.53005 * 109.46843 * 60.00001 * 18 17 16 20 20 C 1.52994 * 109.46832 * 171.47858 * 14 2 1 21 21 H 1.08998 * 109.47344 * 60.00571 * 20 14 2 22 22 O 1.42894 * 109.47698 * 300.00003 * 20 14 2 23 23 H 1.08998 * 109.47448 * 289.92438 * 1 2 3 24 24 H 1.09000 * 109.47356 * 49.92717 * 1 2 3 25 25 H 1.09003 * 109.46866 * 169.92247 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95293 * 3 2 1 27 27 H 1.08998 * 109.47272 * 173.95175 * 3 2 1 28 28 H 1.08993 * 109.46833 * 300.00037 * 4 3 2 29 29 H 1.08997 * 109.46897 * 59.99955 * 4 3 2 30 30 H 1.08993 * 109.47600 * 299.99903 * 5 4 3 31 31 H 1.09008 * 109.46541 * 60.00323 * 5 4 3 32 32 H 0.97005 * 119.99732 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47015 * 300.00070 * 16 14 2 34 34 H 1.08998 * 109.47202 * 59.99474 * 16 14 2 35 35 H 1.08998 * 109.47515 * 59.99618 * 17 16 14 36 36 H 1.09000 * 109.47706 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47557 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47233 * 300.00360 * 18 17 16 39 39 H 1.09000 * 109.46913 * 60.00163 * 19 18 17 40 40 H 1.08999 * 109.47015 * 180.02562 * 19 18 17 41 41 H 0.96693 * 114.00828 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1791 3.4861 -1.3179 6 6 1.8211 4.1616 -2.6166 7 1 1.2595 3.6255 -3.3672 8 6 2.2115 5.4638 -2.8468 9 7 1.8986 6.0534 -3.9800 10 14 3.1835 6.3909 -1.5487 11 1 4.6361 6.1780 -1.7722 12 1 2.8756 7.8406 -1.6413 13 1 2.8115 5.8908 -0.2008 14 6 1.9955 -0.7660 1.1376 15 1 1.7743 -0.2376 2.0650 16 6 1.3396 -2.1479 1.1692 17 6 1.8873 -2.9455 2.3543 18 6 3.4020 -3.1032 2.2065 19 6 4.0580 -1.7212 2.1749 20 6 3.5100 -0.9236 0.9890 21 1 3.9773 0.0608 0.9665 22 8 3.7999 -1.6164 -0.2267 23 1 -0.3634 0.3502 0.9661 24 1 -0.3634 0.6616 -0.7864 25 1 -0.3633 -1.0118 -0.1798 26 1 1.5610 1.9273 0.8310 27 1 3.0797 1.3444 0.1083 28 1 2.0657 1.5016 -2.1491 29 1 0.5471 2.0845 -1.4264 30 1 1.7445 4.0417 -0.4871 31 1 3.2635 3.4593 -1.2095 32 1 2.1729 6.9697 -4.1418 33 1 0.2605 -2.0356 1.2750 34 1 1.5606 -2.6763 0.2419 35 1 1.6659 -2.4169 3.2815 36 1 1.4204 -3.9301 2.3767 37 1 3.7923 -3.6718 3.0506 38 1 3.6235 -3.6318 1.2793 39 1 3.8365 -1.1926 3.1020 40 1 5.1370 -1.8335 2.0691 41 1 4.7438 -1.7526 -0.3864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252927909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:37 Heat of formation + Delta-G solvation = -67.367334 kcal Electronic energy + Delta-G solvation = -18151.429335 eV Core-core repulsion = 15451.401243 eV Total energy + Delta-G solvation = -2700.028092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.73644 -36.63322 -34.99579 -33.56989 -31.64844 -30.17701 -29.15655 -27.33649 -25.16642 -22.71718 -22.22178 -20.82355 -19.85957 -19.63139 -16.85840 -16.60416 -16.27420 -15.29706 -14.78539 -14.61317 -14.29153 -13.96451 -13.52379 -13.42228 -13.04444 -12.81537 -12.54228 -12.19668 -11.94578 -11.81865 -11.43485 -11.31790 -11.25719 -11.02066 -10.84190 -10.71678 -10.62422 -10.03164 -9.89799 -9.67584 -9.53078 -9.47066 -9.11207 -8.49026 -7.96689 -5.99455 -3.96639 3.33046 3.39975 3.43946 4.01504 4.28868 4.49074 4.58838 4.72761 4.82581 5.04488 5.14962 5.26799 5.30426 5.34408 5.40660 5.47118 5.59597 5.63031 5.67041 5.76735 5.81377 5.92075 5.94108 6.02255 6.06742 6.11035 6.20637 6.28025 6.39828 6.63645 6.67462 6.99255 7.34273 7.37304 7.46547 7.55016 7.79282 7.86000 8.60898 9.06779 9.63410 11.14277 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.004839 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.763368 B = 5784.453002 C = 6090.861220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.527 5.527 3 C 0.051 3.949 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.516 4.516 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.094 3.906 15 H 0.044 0.956 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.113 3.887 21 H 0.055 0.945 22 O -0.542 6.542 23 H 0.018 0.982 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -17.646 14.697 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.250 5.250 3 C -0.076 4.076 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.554 4.554 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 C -0.015 4.015 15 H 0.062 0.938 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.191 4.191 20 C 0.053 3.947 21 H 0.073 0.927 22 O -0.345 6.345 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.072 -17.694 14.118 22.731 hybrid contribution 0.897 1.132 1.476 2.065 sum 2.969 -16.562 15.595 22.941 Atomic orbital electron populations 1.22477 0.87923 1.02089 1.00306 1.62002 1.07296 1.14195 1.41532 1.22362 0.99576 0.86768 0.98869 1.21463 1.00437 0.96664 0.94815 1.19554 0.95611 0.92341 0.97587 1.21162 1.35390 0.97783 1.01103 0.91014 1.25040 0.95749 0.97535 0.95268 1.69925 1.47203 1.13238 1.24113 0.86772 0.80665 0.78889 0.82904 1.20325 1.21449 1.19147 1.21604 0.93030 0.94782 0.92066 0.93819 1.21581 0.99061 0.94896 0.99363 1.21526 0.95769 1.00002 0.98264 1.21440 0.95321 0.96517 1.01907 1.22292 1.00110 0.97328 0.99403 1.21784 0.94997 0.93974 0.83942 0.92735 1.86653 1.28461 1.79094 1.40307 0.96350 0.90508 0.91646 0.95782 0.91357 0.91905 0.92856 0.96982 0.97215 0.92828 0.92078 0.90100 0.92495 0.91934 0.92492 0.91159 0.91380 0.91647 0.78719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.66 60.07 0.52 0.81 16 2 N -0.53 -8.22 4.50 -234.88 -1.06 -9.27 16 3 C 0.05 0.90 4.82 -3.82 -0.02 0.88 16 4 C -0.10 -2.02 5.10 -26.73 -0.14 -2.15 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 6 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 7 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 10 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 C 0.09 1.22 1.72 -67.71 -0.12 1.10 16 15 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 16 C -0.11 -1.26 4.54 -26.73 -0.12 -1.39 16 17 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 18 C -0.11 -1.01 5.78 -26.73 -0.15 -1.16 16 19 C -0.15 -1.40 5.64 -26.70 -0.15 -1.55 16 20 C 0.11 1.34 3.01 -26.70 -0.08 1.26 16 21 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 22 O -0.54 -6.85 11.84 -35.23 -0.42 -7.27 16 23 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 24 H 0.08 1.18 6.08 -51.93 -0.32 0.86 16 25 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 26 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.07 1.17 6.01 -51.93 -0.31 0.86 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.05 1.12 6.36 -51.93 -0.33 0.79 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 31 H 0.01 0.23 7.57 -51.92 -0.39 -0.16 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.06 0.67 6.45 -51.93 -0.34 0.33 16 34 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.66 7.68 -51.93 -0.40 0.27 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.37 3.21 9.08 45.56 0.41 3.63 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -32.25 309.44 -8.17 -40.42 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.50 Total: -0.71 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -0.96 Total: -17.58 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.28 Total: -37.04 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.42 Total: -7.27 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.25 -8.17 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252927909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.949 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds