Wall clock time and date at job start Mon Mar 30 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 110.99857 * 2 1 4 4 C 1.53003 * 109.47339 * 293.95600 * 3 2 1 5 5 C 1.53001 * 109.47062 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46980 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99533 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00113 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46867 * 90.00340 * 10 8 6 12 12 H 1.48499 * 109.46954 * 210.00355 * 10 8 6 13 13 H 1.48499 * 109.46794 * 330.00499 * 10 8 6 14 14 C 1.46902 * 111.00051 * 123.95354 * 2 1 3 15 15 H 1.09000 * 109.47318 * 291.48322 * 14 2 1 16 16 C 1.53005 * 109.47062 * 51.48149 * 14 2 1 17 17 C 1.52990 * 109.47192 * 180.02562 * 16 14 2 18 18 C 1.53004 * 109.47260 * 299.99785 * 17 16 14 19 19 C 1.53005 * 109.46843 * 60.00001 * 18 17 16 20 20 C 1.52994 * 109.46832 * 171.47858 * 14 2 1 21 21 H 1.08998 * 109.47344 * 60.00571 * 20 14 2 22 22 O 1.42894 * 109.47698 * 300.00003 * 20 14 2 23 23 H 1.08998 * 109.47448 * 289.92438 * 1 2 3 24 24 H 1.09000 * 109.47356 * 49.92717 * 1 2 3 25 25 H 1.09003 * 109.46866 * 169.92247 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95293 * 3 2 1 27 27 H 1.08998 * 109.47272 * 173.95175 * 3 2 1 28 28 H 1.08993 * 109.46833 * 300.00037 * 4 3 2 29 29 H 1.08997 * 109.46897 * 59.99955 * 4 3 2 30 30 H 1.08993 * 109.47600 * 299.99903 * 5 4 3 31 31 H 1.09008 * 109.46541 * 60.00323 * 5 4 3 32 32 H 0.97005 * 119.99732 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47015 * 300.00070 * 16 14 2 34 34 H 1.08998 * 109.47202 * 59.99474 * 16 14 2 35 35 H 1.08998 * 109.47515 * 59.99618 * 17 16 14 36 36 H 1.09000 * 109.47706 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47557 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47233 * 300.00360 * 18 17 16 39 39 H 1.09000 * 109.46913 * 60.00163 * 19 18 17 40 40 H 1.08999 * 109.47015 * 180.02562 * 19 18 17 41 41 H 0.96693 * 114.00828 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1791 3.4861 -1.3179 6 6 1.8211 4.1616 -2.6166 7 1 1.2595 3.6255 -3.3672 8 6 2.2115 5.4638 -2.8468 9 7 1.8986 6.0534 -3.9800 10 14 3.1835 6.3909 -1.5487 11 1 4.6361 6.1780 -1.7722 12 1 2.8756 7.8406 -1.6413 13 1 2.8115 5.8908 -0.2008 14 6 1.9955 -0.7660 1.1376 15 1 1.7743 -0.2376 2.0650 16 6 1.3396 -2.1479 1.1692 17 6 1.8873 -2.9455 2.3543 18 6 3.4020 -3.1032 2.2065 19 6 4.0580 -1.7212 2.1749 20 6 3.5100 -0.9236 0.9890 21 1 3.9773 0.0608 0.9665 22 8 3.7999 -1.6164 -0.2267 23 1 -0.3634 0.3502 0.9661 24 1 -0.3634 0.6616 -0.7864 25 1 -0.3633 -1.0118 -0.1798 26 1 1.5610 1.9273 0.8310 27 1 3.0797 1.3444 0.1083 28 1 2.0657 1.5016 -2.1491 29 1 0.5471 2.0845 -1.4264 30 1 1.7445 4.0417 -0.4871 31 1 3.2635 3.4593 -1.2095 32 1 2.1729 6.9697 -4.1418 33 1 0.2605 -2.0356 1.2750 34 1 1.5606 -2.6763 0.2419 35 1 1.6659 -2.4169 3.2815 36 1 1.4204 -3.9301 2.3767 37 1 3.7923 -3.6718 3.0506 38 1 3.6235 -3.6318 1.2793 39 1 3.8365 -1.1926 3.1020 40 1 5.1370 -1.8335 2.0691 41 1 4.7438 -1.7526 -0.3864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252927909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:36 Heat of formation + Delta-G solvation = -90.562694 kcal Electronic energy + Delta-G solvation = -18152.435162 eV Core-core repulsion = 15451.401243 eV Total energy + Delta-G solvation = -2701.033919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68948 -37.83483 -35.99000 -35.39186 -33.55425 -31.11547 -30.21564 -28.90515 -26.59400 -24.08914 -23.18713 -22.10827 -21.42698 -20.56864 -18.87897 -17.74518 -17.28006 -16.50394 -16.30431 -15.73263 -15.53482 -15.42679 -14.81260 -14.62275 -14.43016 -13.93881 -13.76971 -13.64272 -13.23984 -13.10503 -12.71630 -12.66889 -12.40525 -12.31942 -12.09946 -11.93941 -11.76558 -11.47867 -11.45413 -11.35367 -11.17202 -10.84651 -10.76340 -10.49415 -9.15491 -8.29592 -6.34119 1.35091 1.37498 1.49735 2.36292 2.90944 3.05371 3.43431 3.78867 3.90572 3.98731 4.14916 4.22562 4.24933 4.33949 4.44408 4.48136 4.55434 4.59275 4.67014 4.69670 4.83322 4.86743 4.90395 4.96667 5.00841 5.07375 5.13461 5.22696 5.27830 5.30807 5.35247 5.51383 5.57943 5.60464 5.66006 6.16073 6.26329 6.31112 6.73845 7.04306 7.30322 8.87679 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.004839 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.763368 B = 5784.453002 C = 6090.861220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.064 3.936 4 C -0.086 4.086 5 C -0.008 4.008 6 C -0.534 4.534 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.246 1.246 14 C 0.089 3.911 15 H 0.050 0.950 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.146 4.146 20 C 0.110 3.890 21 H 0.044 0.956 22 O -0.563 6.563 23 H 0.030 0.970 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -18.364 17.652 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.063 4.063 4 C -0.124 4.124 5 C -0.046 4.046 6 C -0.572 4.572 7 H 0.045 0.955 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.019 4.019 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.184 4.184 20 C 0.050 3.950 21 H 0.062 0.938 22 O -0.369 6.369 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.226 -18.444 17.081 25.344 hybrid contribution 0.478 1.297 0.439 1.450 sum 3.704 -17.147 17.520 24.793 Atomic orbital electron populations 1.22471 0.87373 1.02589 1.00254 1.61950 1.08010 1.13122 1.43513 1.22092 0.99999 0.87810 0.96432 1.21276 0.99664 0.94927 0.96555 1.19479 0.96163 0.93938 0.94996 1.21498 1.35086 0.98304 1.02328 0.95473 1.26080 0.96921 0.98580 0.97864 1.70085 1.48753 1.13942 1.26621 0.85586 0.79173 0.77234 0.80206 1.18955 1.20804 1.16959 1.21762 0.93977 0.95089 0.91087 0.93226 1.21525 0.99263 0.94030 0.99533 1.21526 0.96095 1.00247 0.97404 1.21436 0.95006 0.96370 1.02199 1.22237 1.00888 0.97064 0.98231 1.21817 0.94263 0.94010 0.84861 0.93796 1.86610 1.30102 1.79165 1.40996 0.95177 0.92337 0.90251 0.95161 0.90847 0.93824 0.93544 0.96238 0.96331 0.92458 0.91773 0.92080 0.91604 0.90849 0.90724 0.92068 0.90634 0.90221 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.66 127.69 1.11 1.68 16 2 N -0.54 -16.40 4.50 -897.03 -4.03 -20.44 16 3 C 0.06 2.17 4.82 86.31 0.42 2.59 16 4 C -0.09 -3.66 5.10 30.60 0.16 -3.50 16 5 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 6 C -0.53 -32.27 9.66 25.60 0.25 -32.03 16 7 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 8 C 0.00 0.12 5.47 84.66 0.46 0.58 16 9 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 10 Si 0.96 45.15 27.47 68.60 1.88 47.04 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 14 C 0.09 2.15 1.72 44.91 0.08 2.22 16 15 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 16 C -0.11 -2.21 4.54 30.59 0.14 -2.08 16 17 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 18 C -0.11 -1.66 5.78 30.60 0.18 -1.48 16 19 C -0.15 -2.26 5.64 30.62 0.17 -2.09 16 20 C 0.11 2.41 3.01 30.61 0.09 2.51 16 21 H 0.04 1.05 6.32 -2.39 -0.02 1.03 16 22 O -0.56 -13.61 11.84 -148.98 -1.76 -15.37 16 23 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 24 H 0.06 1.81 6.08 -2.39 -0.01 1.79 16 25 H 0.08 1.94 6.59 -2.39 -0.02 1.92 16 26 H 0.03 0.99 8.12 -2.38 -0.02 0.97 16 27 H 0.07 2.41 6.01 -2.39 -0.01 2.39 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.00 6.36 -2.39 -0.02 1.98 16 30 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 31 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 32 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 33 H 0.06 1.28 6.45 -2.39 -0.02 1.26 16 34 H 0.06 1.53 7.68 -2.39 -0.02 1.51 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.38 6.23 9.08 -74.06 -0.67 5.56 16 Total: -1.00 -70.28 309.44 0.00 -70.28 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.26 Total: 13.16 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.35 Total: -33.47 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -3.73 Total: -81.64 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.76 Total: -15.37 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -70.28 0.00 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252927909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.280 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds