Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00277 * 2 1 4 4 C 1.46894 * 111.00167 * 123.95821 * 2 1 3 5 5 C 1.52997 * 109.47515 * 169.99883 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46843 * 111.00049 * 294.21280 * 6 5 4 8 8 C 1.53043 * 109.52446 * 174.16274 * 7 6 5 9 9 C 1.53115 * 109.28035 * 59.17281 * 8 7 6 10 10 C 1.53119 * 109.16391 * 302.35079 * 9 8 7 11 11 H 1.09002 * 109.53620 * 297.69125 * 10 9 8 12 12 N 1.46500 * 109.50494 * 177.59384 * 10 9 8 13 13 C 1.36936 * 119.99937 * 85.19628 * 12 10 9 14 14 H 1.08000 * 120.00096 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99877 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99803 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00013 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47238 * 89.99805 * 17 15 13 19 19 H 1.48499 * 109.46862 * 210.00053 * 17 15 13 20 20 H 1.48507 * 109.46828 * 329.99572 * 17 15 13 21 21 C 1.46842 * 111.00041 * 169.99637 * 6 5 4 22 22 H 1.08994 * 109.47059 * 296.04949 * 1 2 3 23 23 H 1.09007 * 109.46908 * 56.04351 * 1 2 3 24 24 H 1.08999 * 109.47331 * 176.03847 * 1 2 3 25 25 H 1.08994 * 109.47768 * 183.95429 * 3 2 1 26 26 H 1.09001 * 109.47114 * 303.96032 * 3 2 1 27 27 H 1.09004 * 109.46895 * 63.95547 * 3 2 1 28 28 H 1.09002 * 109.47104 * 49.99615 * 4 2 1 29 29 H 1.08998 * 109.46828 * 290.00448 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 32 32 H 1.09004 * 109.46019 * 294.17499 * 7 6 5 33 33 H 1.08999 * 109.46883 * 54.14319 * 7 6 5 34 34 H 1.09007 * 109.49669 * 299.23395 * 8 7 6 35 35 H 1.09001 * 109.53519 * 179.13897 * 8 7 6 36 36 H 1.08996 * 109.52692 * 182.44132 * 9 8 7 37 37 H 1.09007 * 109.57302 * 62.28363 * 9 8 7 38 38 H 0.96997 * 119.99919 * 265.19630 * 12 10 9 39 39 H 0.96997 * 119.99898 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.46877 * 305.85973 * 21 6 5 41 41 H 1.09002 * 109.46302 * 65.82604 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 7 4.0309 -1.7210 2.1081 7 6 3.9054 -0.9599 3.3576 8 6 4.3269 -1.8396 4.5369 9 6 5.7756 -2.2931 4.3369 10 6 5.8890 -3.0411 3.0057 11 1 5.2636 -3.9334 3.0345 12 7 7.2836 -3.4285 2.7795 13 6 7.7674 -4.5906 3.3184 14 1 7.1208 -5.2218 3.9099 15 6 9.0887 -4.9580 3.1036 16 7 9.5539 -6.0747 3.6221 17 14 10.2070 -3.8666 2.0801 18 1 10.8838 -2.8838 2.9640 19 1 11.2266 -4.7036 1.3982 20 1 9.3993 -3.1447 1.0642 21 6 5.4222 -2.1266 1.8708 22 1 -0.3633 0.4513 0.9232 23 1 -0.3633 0.5741 -0.8525 24 1 -0.3634 -1.0252 -0.0710 25 1 3.0828 1.3432 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7045 1.8723 0.9234 28 1 1.5089 -1.7407 1.1755 29 1 1.7975 -0.2249 2.0627 30 1 3.9910 0.0192 0.9322 31 1 3.7023 -1.4966 0.0450 32 1 4.5474 -0.0802 3.3131 33 1 2.8696 -0.6471 3.4899 34 1 3.6763 -2.7127 4.5903 35 1 4.2483 -1.2701 5.4629 36 1 6.0660 -2.9551 5.1526 37 1 6.4320 -1.4229 4.3228 38 1 7.8642 -2.8618 2.2480 39 1 10.4773 -6.3312 3.4723 40 1 5.4882 -2.6610 0.9232 41 1 6.0572 -1.2414 1.8333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259327719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -0.744063 kcal Electronic energy + Delta-G solvation = -17926.447850 eV Core-core repulsion = 15261.601510 eV Total energy + Delta-G solvation = -2664.846340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31365 -38.38957 -36.46448 -34.25972 -33.10479 -30.74551 -29.52627 -28.46682 -25.98533 -25.22637 -23.67208 -22.99942 -21.39725 -20.91302 -19.57337 -17.43965 -16.63326 -16.53546 -16.36162 -15.66275 -15.59551 -15.42245 -15.00463 -14.85057 -14.52593 -14.39035 -14.01578 -13.58402 -13.26878 -13.02391 -12.96992 -12.64511 -12.57306 -12.44731 -12.31438 -12.03402 -11.96591 -11.83907 -11.73896 -11.49785 -11.22623 -10.90685 -9.38710 -9.32290 -9.19926 -8.02118 -5.36029 1.37105 1.40683 1.48097 2.48421 2.60712 3.27502 3.29109 3.68093 3.94128 3.98303 4.05253 4.13596 4.18264 4.29652 4.40310 4.45347 4.49333 4.55989 4.64615 4.67306 4.69949 4.76599 4.82723 4.97842 4.99119 5.01057 5.03933 5.07920 5.12983 5.17439 5.43063 5.54837 5.75956 6.00891 6.04617 6.13395 6.20676 6.24390 7.07431 7.82900 8.02826 9.19647 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037515 B = 0.004766 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.185291 B = 5873.965307 C = 6222.608121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.564 5.564 3 C 0.021 3.979 4 C 0.067 3.933 5 C 0.065 3.935 6 N -0.541 5.541 7 C 0.058 3.942 8 C -0.107 4.107 9 C -0.131 4.131 10 C 0.181 3.819 11 H 0.042 0.958 12 N -0.752 5.752 13 C -0.228 4.228 14 H 0.055 0.945 15 C -0.064 4.064 16 N -0.985 5.985 17 Si 0.956 3.044 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.252 1.252 21 C 0.066 3.934 22 H 0.029 0.971 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.069 0.931 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 17.676 -5.744 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.288 5.288 3 C -0.127 4.127 4 C -0.061 4.061 5 C -0.063 4.063 6 N -0.266 5.266 7 C -0.069 4.069 8 C -0.145 4.145 9 C -0.171 4.171 10 C 0.073 3.927 11 H 0.060 0.940 12 N -0.395 5.395 13 C -0.359 4.359 14 H 0.073 0.927 15 C -0.255 4.255 16 N -0.636 5.636 17 Si 0.783 3.217 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.177 1.177 21 C -0.063 4.063 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.854 16.826 -6.030 25.263 hybrid contribution 1.424 1.031 0.332 1.789 sum -16.430 17.857 -5.697 24.925 Atomic orbital electron populations 1.22402 0.85970 1.02753 1.01055 1.61876 1.09099 1.14545 1.43329 1.22469 1.00905 0.88315 1.01028 1.22005 0.94289 0.98567 0.91274 1.22013 0.94904 0.96063 0.93343 1.61723 1.18809 1.42817 1.03285 1.22181 1.01561 0.94249 0.88931 1.21530 0.95062 1.00010 0.97946 1.22116 0.97044 0.99384 0.98524 1.20304 0.83779 0.95434 0.93174 0.94009 1.42725 1.09297 1.24580 1.62878 1.18994 0.94818 0.97640 1.24405 0.92728 1.25495 0.98696 0.98888 1.02466 1.69885 1.15976 1.26087 1.51622 0.85395 0.78728 0.78336 0.79235 1.20481 1.22163 1.17683 1.22110 0.88173 0.97508 0.98479 0.95255 0.90342 0.91160 0.91608 0.90376 0.95315 0.90447 0.94160 0.94522 0.90852 0.94892 0.88977 0.91712 0.89899 0.94220 0.92998 0.80296 0.93332 0.91210 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.57 127.69 1.22 1.58 16 2 N -0.56 -10.01 5.02 -948.88 -4.76 -14.77 16 3 C 0.02 0.31 9.32 127.69 1.19 1.50 16 4 C 0.07 1.28 4.89 86.30 0.42 1.70 16 5 C 0.06 1.45 4.88 86.30 0.42 1.87 16 6 N -0.54 -14.37 4.66 -896.37 -4.17 -18.55 16 7 C 0.06 1.35 5.29 86.33 0.46 1.81 16 8 C -0.11 -2.82 6.09 30.65 0.19 -2.63 16 9 C -0.13 -4.59 5.59 30.67 0.17 -4.41 16 10 C 0.18 7.17 2.93 45.04 0.13 7.30 16 11 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 12 N -0.75 -36.05 4.93 -322.68 -1.59 -37.64 16 13 C -0.23 -13.28 10.41 84.03 0.88 -12.40 16 14 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 15 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 16 N -0.99 -64.20 13.97 21.65 0.30 -63.90 16 17 Si 0.96 46.17 27.74 68.60 1.90 48.07 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 21 C 0.07 2.12 4.93 86.33 0.43 2.55 16 22 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.08 0.90 8.12 -2.38 -0.02 0.88 16 24 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 25 H 0.07 1.03 6.47 -2.39 -0.02 1.01 16 26 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 29 H 0.04 0.73 6.41 -2.39 -0.02 0.71 16 30 H 0.04 0.79 6.53 -2.39 -0.02 0.77 16 31 H 0.07 1.78 7.99 -2.39 -0.02 1.76 16 32 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 1.76 6.21 -2.39 -0.01 1.75 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.36 16.66 5.66 -92.71 -0.52 16.13 16 39 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.07 2.32 8.02 -2.39 -0.02 2.30 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.14 315.75 -1.96 -69.10 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.39 Total: 22.21 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.97 Total: -4.53 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -10.22 Total: -134.86 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.07 kcal Total: -67.14 -1.96 -69.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259327719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.354 kcal (2) G-P(sol) polarization free energy of solvation -67.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds