Wall clock time and date at job start Mon Mar 30 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00108 * 2 1 4 4 C 1.46897 * 111.00264 * 123.95934 * 2 1 3 5 5 C 1.52995 * 109.47432 * 169.99857 * 4 2 1 6 6 N 1.46899 * 109.47069 * 179.97438 * 5 4 2 7 7 C 1.48564 * 111.00028 * 290.12509 * 6 5 4 8 8 C 1.54380 * 104.59582 * 200.96146 * 7 6 5 9 9 C 1.54262 * 105.06134 * 23.85261 * 8 7 6 10 10 H 1.08999 * 110.32529 * 118.99308 * 9 8 7 11 11 N 1.46499 * 110.32641 * 241.10716 * 9 8 7 12 12 C 1.46501 * 120.00119 * 58.54104 * 11 9 8 13 13 C 1.36936 * 119.99982 * 238.54823 * 11 9 8 14 14 H 1.07999 * 120.00048 * 22.21842 * 13 11 9 15 15 C 1.38810 * 120.00165 * 202.21969 * 13 11 9 16 16 N 1.31619 * 119.99889 * 11.29249 * 15 13 11 17 17 Si 1.86803 * 120.00161 * 191.29057 * 15 13 11 18 18 H 1.48499 * 109.46909 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47113 * 120.00039 * 17 15 13 20 20 H 1.48500 * 109.46981 * 240.00120 * 17 15 13 21 21 C 1.48563 * 110.99949 * 174.71076 * 6 5 4 22 22 H 1.08995 * 109.47336 * 296.04376 * 1 2 3 23 23 H 1.09004 * 109.47403 * 56.04739 * 1 2 3 24 24 H 1.09006 * 109.46896 * 176.04200 * 1 2 3 25 25 H 1.08998 * 109.46928 * 183.95648 * 3 2 1 26 26 H 1.09002 * 109.47150 * 303.95602 * 3 2 1 27 27 H 1.08997 * 109.46552 * 63.95659 * 3 2 1 28 28 H 1.09002 * 109.46981 * 49.99432 * 4 2 1 29 29 H 1.09006 * 109.46736 * 290.00195 * 4 2 1 30 30 H 1.09000 * 109.46976 * 60.00146 * 5 4 2 31 31 H 1.08999 * 109.47124 * 299.99760 * 5 4 2 32 32 H 1.08995 * 110.40915 * 82.18612 * 7 6 5 33 33 H 1.09000 * 110.40789 * 319.74055 * 7 6 5 34 34 H 1.08996 * 110.32454 * 264.95883 * 8 7 6 35 35 H 1.08999 * 110.32371 * 142.75005 * 8 7 6 36 36 H 1.09004 * 109.46729 * 94.39812 * 12 11 9 37 37 H 1.09000 * 109.47132 * 214.39581 * 12 11 9 38 38 H 1.08998 * 109.47310 * 334.40180 * 12 11 9 39 39 H 0.97001 * 119.99945 * 180.02562 * 16 15 13 40 40 H 1.08994 * 110.41415 * 40.26014 * 21 6 5 41 41 H 1.09000 * 110.40915 * 277.81476 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5044 -0.9554 0.9702 6 7 4.0309 -1.7210 2.1080 7 6 3.9942 -0.9144 3.3551 8 6 5.0246 -1.5895 4.2856 9 6 5.9960 -2.3262 3.3404 10 1 7.0074 -1.9377 3.4592 11 7 5.9705 -3.7666 3.6064 12 6 4.7135 -4.5105 3.4925 13 6 7.1215 -4.4177 3.9618 14 1 7.9441 -3.8650 4.3909 15 6 7.2312 -5.7882 3.7703 16 7 6.3320 -6.4262 3.0514 17 14 8.6548 -6.7269 4.5329 18 1 9.5207 -5.7857 5.2875 19 1 8.1264 -7.7629 5.4563 20 1 9.4492 -7.3783 3.4606 21 6 5.4707 -2.0342 1.9184 22 1 -0.3634 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0828 1.3432 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8722 0.9233 28 1 1.5089 -1.7407 1.1755 29 1 1.7975 -0.2249 2.0627 30 1 3.9909 0.0192 0.9323 31 1 3.7023 -1.4966 0.0450 32 1 3.0000 -0.9485 3.8006 33 1 4.2848 0.1159 3.1501 34 1 4.5289 -2.2996 4.9474 35 1 5.5589 -0.8382 4.8671 36 1 4.6389 -4.9472 2.4965 37 1 4.6917 -5.3038 4.2397 38 1 3.8748 -3.8339 3.6562 39 1 6.4084 -7.3839 2.9179 40 1 5.9924 -1.1791 1.4886 41 1 5.5883 -2.9114 1.2822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259338547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:51 Heat of formation + Delta-G solvation = 43.830148 kcal Electronic energy + Delta-G solvation = -18225.127834 eV Core-core repulsion = 15562.214378 eV Total energy + Delta-G solvation = -2662.913457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.87652 -37.31459 -34.75977 -32.00470 -30.08235 -28.40432 -27.72657 -27.10020 -25.70967 -23.78371 -22.30380 -21.40162 -20.13049 -18.85871 -16.78435 -16.03983 -15.62599 -15.26482 -15.03161 -14.32792 -14.27292 -13.85189 -13.44376 -12.83252 -12.78275 -12.49517 -12.30647 -11.85914 -11.80812 -11.62916 -11.44865 -11.14997 -10.87014 -10.76123 -10.65737 -10.48504 -10.41662 -10.28210 -9.99801 -9.74052 -9.65811 -8.48378 -8.43930 -7.97535 -6.62492 -5.61118 -3.07173 3.42720 3.49584 3.51595 3.76722 4.56481 4.58894 5.02026 5.05036 5.09720 5.23976 5.29029 5.42523 5.42856 5.53498 5.54761 5.60863 5.67010 5.72662 5.79726 5.80217 5.96330 6.06728 6.13722 6.26646 6.28014 6.39285 6.56314 6.81858 6.91731 6.92986 6.97060 7.19983 7.41246 7.51726 7.62202 7.89230 8.03203 8.51176 9.36205 10.00344 10.50777 11.42526 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048618 B = 0.004830 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.781982 B = 5796.220772 C = 6015.912040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.061 3.939 5 C 0.050 3.950 6 N -0.501 5.501 7 C 0.036 3.964 8 C -0.142 4.142 9 C 0.177 3.823 10 H 0.066 0.934 11 N -0.589 5.589 12 C 0.172 3.828 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.905 5.905 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.020 3.980 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.033 0.967 38 H 0.010 0.990 39 H 0.250 0.750 40 H 0.028 0.972 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 13.939 -3.464 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.079 4.079 6 N -0.225 5.225 7 C -0.093 4.093 8 C -0.182 4.182 9 C 0.067 3.933 10 H 0.084 0.916 11 N -0.311 5.311 12 C 0.028 3.972 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.551 5.551 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.110 4.110 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.978 13.013 -3.892 16.282 hybrid contribution 0.903 0.604 0.914 1.420 sum -8.075 13.617 -2.977 16.109 Atomic orbital electron populations 1.22356 0.87294 1.02381 1.00143 1.61900 1.07818 1.13707 1.43906 1.22432 1.01157 0.88963 1.00103 1.22081 0.95810 0.98417 0.90357 1.22201 0.93888 0.96148 0.95619 1.65303 1.17934 1.37787 1.01514 1.23066 0.99596 0.94440 0.92155 1.22954 0.97400 0.99265 0.98586 1.21033 0.95939 0.86290 0.90083 0.91576 1.43981 1.06160 1.01726 1.79202 1.20650 0.84199 0.92508 0.99848 1.19296 0.94206 0.90961 1.34005 0.91564 1.25005 0.98063 0.97605 0.98988 1.70116 1.35957 1.08124 1.40860 0.86218 0.82008 0.79973 0.78544 1.20447 1.21737 1.21836 1.23815 0.86457 0.99607 1.01092 0.95850 0.91567 0.91176 0.91158 0.91637 0.95871 0.89819 0.95001 0.95353 0.90260 0.91372 0.95116 0.90548 0.92569 0.95638 0.94806 0.97110 0.93958 0.95394 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -6.45 5.02 -251.26 -1.26 -7.72 16 3 C 0.02 0.22 9.32 60.06 0.56 0.78 16 4 C 0.06 0.80 5.01 -3.83 -0.02 0.78 16 5 C 0.05 0.73 4.73 -3.83 -0.02 0.72 16 6 N -0.50 -8.56 4.73 -229.97 -1.09 -9.65 16 7 C 0.04 0.56 5.74 -2.18 -0.01 0.54 16 8 C -0.14 -2.51 6.14 -25.35 -0.16 -2.67 16 9 C 0.18 3.69 3.54 -66.55 -0.24 3.45 16 10 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 11 N -0.59 -15.03 2.79 -171.90 -0.48 -15.51 16 12 C 0.17 4.42 7.93 59.85 0.47 4.90 16 13 C -0.25 -7.11 9.62 -15.06 -0.14 -7.26 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 16 N -0.91 -26.98 10.57 55.49 0.59 -26.39 16 17 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C 0.02 0.38 5.68 -2.18 -0.01 0.37 16 22 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 24 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.07 0.72 6.47 -51.93 -0.34 0.39 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.03 0.41 7.23 -51.93 -0.38 0.04 16 30 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 31 H 0.08 1.23 8.13 -51.93 -0.42 0.80 16 32 H 0.07 1.01 7.76 -51.93 -0.40 0.60 16 33 H 0.03 0.44 7.82 -51.93 -0.41 0.03 16 34 H 0.08 1.48 7.05 -51.93 -0.37 1.12 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.71 7.41 -51.93 -0.38 0.33 16 37 H 0.03 0.94 7.19 -51.93 -0.37 0.56 16 38 H 0.01 0.24 6.41 -51.93 -0.33 -0.09 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 41 H 0.09 1.94 8.04 -51.93 -0.42 1.52 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -29.79 315.11 -9.06 -38.85 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -7.47 Total: -3.88 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.92 Total: 2.40 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -2.24 Total: -59.26 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.79 -9.06 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.681 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds