Wall clock time and date at job start Mon Mar 30 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00061 * 2 1 4 4 C 1.46904 * 110.99786 * 123.95203 * 2 1 3 5 5 C 1.52998 * 109.47442 * 66.04617 * 4 2 1 6 6 N 1.46897 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.48529 * 111.00049 * 287.39599 * 6 5 4 8 8 C 1.54941 * 103.22981 * 200.27783 * 7 6 5 9 9 C 1.54599 * 102.91516 * 37.41324 * 8 7 6 10 10 H 1.09000 * 110.38796 * 219.08169 * 9 8 7 11 11 N 1.46505 * 110.30414 * 96.96569 * 9 8 7 12 12 C 1.46498 * 119.99482 * 303.99724 * 11 9 8 13 13 C 1.36936 * 119.99870 * 124.28326 * 11 9 8 14 14 H 1.07994 * 120.00449 * 21.46842 * 13 11 9 15 15 C 1.38812 * 119.99599 * 201.47059 * 13 11 9 16 16 N 1.31623 * 119.99945 * 14.71699 * 15 13 11 17 17 Si 1.86796 * 120.00061 * 194.72158 * 15 13 11 18 18 H 1.48501 * 109.47223 * 89.99648 * 17 15 13 19 19 H 1.48493 * 109.47284 * 209.99741 * 17 15 13 20 20 H 1.48499 * 109.47240 * 329.99988 * 17 15 13 21 21 C 1.47897 * 110.99934 * 169.99883 * 6 5 4 22 22 H 1.08996 * 109.47423 * 296.04874 * 1 2 3 23 23 H 1.08999 * 109.47375 * 56.05217 * 1 2 3 24 24 H 1.09002 * 109.46912 * 176.05059 * 1 2 3 25 25 H 1.08998 * 109.47361 * 183.95074 * 3 2 1 26 26 H 1.09007 * 109.47050 * 303.94993 * 3 2 1 27 27 H 1.09002 * 109.47623 * 63.94771 * 3 2 1 28 28 H 1.09003 * 109.47226 * 306.04614 * 4 2 1 29 29 H 1.08996 * 109.47051 * 186.05022 * 4 2 1 30 30 H 1.09003 * 109.46913 * 59.99804 * 5 4 2 31 31 H 1.08998 * 109.46895 * 299.99930 * 5 4 2 32 32 H 1.08995 * 110.66948 * 318.71839 * 7 6 5 33 33 H 1.09008 * 110.66627 * 81.68060 * 7 6 5 34 34 H 1.09004 * 110.72075 * 279.06455 * 8 7 6 35 35 H 1.08993 * 110.72542 * 155.77057 * 8 7 6 36 36 H 1.09008 * 109.46760 * 91.66151 * 12 11 9 37 37 H 1.09001 * 109.47328 * 211.65814 * 12 11 9 38 38 H 1.08998 * 109.47687 * 331.66355 * 12 11 9 39 39 H 0.97000 * 119.99447 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.92034 * 26.49733 * 21 6 5 41 41 H 1.08999 * 109.92353 * 265.19948 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9705 6 7 2.1583 -3.0086 2.1078 7 6 3.6351 -3.1417 2.0215 8 6 3.9355 -4.3578 2.9335 9 6 2.7420 -5.3006 2.6564 10 1 2.4168 -5.7826 3.5783 11 7 3.1113 -6.3087 1.6595 12 6 3.6190 -5.8921 0.3500 13 6 2.9764 -7.6401 1.9498 14 1 2.3013 -7.9569 2.7309 15 6 3.7076 -8.5827 1.2399 16 7 4.7292 -8.2035 0.5017 17 14 3.2416 -10.3892 1.3323 18 1 2.2642 -10.7038 0.2594 19 1 4.4570 -11.2237 1.1548 20 1 2.6329 -10.6764 2.6560 21 6 1.6284 -4.3893 2.1080 22 1 -0.3634 0.4513 0.9232 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 3.0827 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7043 1.8724 0.9232 28 1 1.5610 -0.3872 2.0629 29 1 3.0796 -0.6610 1.1758 30 1 2.0658 -2.6214 0.0453 31 1 0.5472 -2.3475 0.9325 32 1 3.9439 -3.3443 0.9960 33 1 4.1251 -2.2441 2.3992 34 1 3.9553 -4.0584 3.9814 35 1 4.8751 -4.8309 2.6484 36 1 4.7067 -5.8298 0.3850 37 1 3.3209 -6.6209 -0.4039 38 1 3.2072 -4.9158 0.0943 39 1 5.2399 -8.8621 0.0054 40 1 1.3707 -4.6884 1.0919 41 1 0.7495 -4.4498 2.7498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259338554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:53 Heat of formation + Delta-G solvation = 41.617209 kcal Electronic energy + Delta-G solvation = -18235.891525 eV Core-core repulsion = 15572.882108 eV Total energy + Delta-G solvation = -2663.009417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.92998 -37.35258 -34.77786 -32.00007 -30.10931 -28.42733 -27.75190 -27.21727 -25.83646 -23.79024 -22.36857 -21.31017 -20.15689 -18.98097 -16.85064 -15.97632 -15.59799 -15.47189 -14.74842 -14.63165 -14.16257 -13.90231 -13.44165 -12.83584 -12.68119 -12.55207 -12.20614 -12.08014 -11.81279 -11.71120 -11.65148 -11.07942 -10.91369 -10.79793 -10.66285 -10.63991 -10.40683 -10.34647 -9.97969 -9.83039 -9.72025 -8.52900 -8.46192 -7.98297 -6.73926 -5.71574 -3.14784 3.40006 3.46370 3.47632 3.76280 4.48201 4.61599 4.92896 5.04535 5.22159 5.26795 5.34637 5.36946 5.44958 5.52020 5.55884 5.66301 5.70227 5.71278 5.81601 5.89669 6.00187 6.03324 6.14070 6.21499 6.29383 6.52915 6.61641 6.76721 6.88782 6.89712 6.92633 7.03152 7.29691 7.41066 7.48326 7.72816 7.82974 8.42359 9.25847 9.90079 10.39137 11.34587 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045220 B = 0.004803 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.040966 B = 5828.348650 C = 5898.463054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.550 5.550 3 C 0.027 3.973 4 C 0.062 3.938 5 C 0.051 3.949 6 N -0.520 5.520 7 C 0.037 3.963 8 C -0.140 4.140 9 C 0.169 3.831 10 H 0.071 0.929 11 N -0.592 5.592 12 C 0.166 3.834 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.001 3.999 16 N -0.907 5.907 17 Si 0.904 3.096 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.022 3.978 22 H 0.025 0.975 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.044 0.956 38 H -0.005 1.005 39 H 0.252 0.748 40 H 0.051 0.949 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 15.445 0.582 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.078 4.078 6 N -0.245 5.245 7 C -0.091 4.091 8 C -0.180 4.180 9 C 0.059 3.941 10 H 0.089 0.911 11 N -0.314 5.314 12 C 0.021 3.979 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.552 5.552 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.108 4.108 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.014 0.986 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.445 15.369 0.501 16.313 hybrid contribution -0.209 -0.959 -0.107 0.987 sum -5.654 14.410 0.394 15.485 Atomic orbital electron populations 1.22429 0.87508 1.02511 1.00165 1.61913 1.08040 1.13675 1.43823 1.22352 1.00806 0.88789 1.00222 1.22048 1.00125 0.93529 0.90866 1.22171 0.99895 0.92816 0.92913 1.64692 1.05968 1.13977 1.39885 1.23241 0.88277 0.98251 0.99282 1.23034 1.01053 0.95618 0.98283 1.21139 0.91314 0.89036 0.92564 0.91099 1.44020 1.75449 1.01567 1.10372 1.20724 0.96778 0.93758 0.86608 1.19263 1.18754 0.81815 1.18670 0.91303 1.24973 0.95961 0.98056 1.00689 1.70090 1.18541 1.32735 1.33861 0.86254 0.77342 0.85135 0.77819 1.21572 1.21818 1.20490 1.23518 0.99232 0.87281 1.00787 0.95680 0.91655 0.91020 0.91382 0.91522 0.95796 0.94159 0.90881 0.93833 0.91416 0.93445 0.91568 0.92109 0.90546 0.95805 0.93681 0.98642 0.93800 0.93099 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.48 5.02 -251.26 -1.26 -7.74 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.80 5.05 -3.82 -0.02 0.78 16 5 C 0.05 0.75 4.63 -3.83 -0.02 0.73 16 6 N -0.52 -8.52 5.24 -230.46 -1.21 -9.73 16 7 C 0.04 0.62 5.43 -1.90 -0.01 0.61 16 8 C -0.14 -2.62 6.33 -24.87 -0.16 -2.78 16 9 C 0.17 3.53 3.52 -66.57 -0.23 3.30 16 10 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 11 N -0.59 -14.89 2.78 -171.93 -0.48 -15.37 16 12 C 0.17 4.14 7.55 59.85 0.45 4.59 16 13 C -0.26 -7.06 9.60 -15.06 -0.14 -7.20 16 14 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 15 C 0.00 0.04 5.04 -17.43 -0.09 -0.05 16 16 N -0.91 -26.64 10.76 55.49 0.60 -26.05 16 17 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.02 0.40 5.90 -2.76 -0.02 0.38 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 24 H 0.07 0.76 6.47 -51.93 -0.34 0.42 16 25 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.07 0.55 8.12 -51.92 -0.42 0.13 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 0.94 7.29 -51.93 -0.38 0.57 16 30 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 31 H 0.07 0.96 6.49 -51.93 -0.34 0.62 16 32 H 0.05 0.86 6.15 -51.93 -0.32 0.54 16 33 H 0.07 0.99 7.80 -51.92 -0.40 0.58 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.61 7.97 -51.93 -0.41 1.20 16 36 H 0.02 0.64 7.58 -51.92 -0.39 0.24 16 37 H 0.04 1.22 7.05 -51.93 -0.37 0.86 16 38 H 0.00 -0.11 5.34 -51.93 -0.28 -0.39 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 1.02 6.64 -51.93 -0.34 0.67 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -29.23 312.36 -9.08 -38.32 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.31 Total: -3.06 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.90 Total: 1.97 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -2.35 Total: -58.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.23 -9.08 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.936 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds