Wall clock time and date at job start Mon Mar 30 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00061 * 2 1 4 4 C 1.46904 * 110.99786 * 123.95203 * 2 1 3 5 5 C 1.52998 * 109.47442 * 66.04617 * 4 2 1 6 6 N 1.46897 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.48529 * 111.00049 * 287.39599 * 6 5 4 8 8 C 1.54941 * 103.22981 * 200.27783 * 7 6 5 9 9 C 1.54599 * 102.91516 * 37.41324 * 8 7 6 10 10 H 1.09000 * 110.38796 * 219.08169 * 9 8 7 11 11 N 1.46505 * 110.30414 * 96.96569 * 9 8 7 12 12 C 1.46498 * 119.99482 * 303.99724 * 11 9 8 13 13 C 1.36936 * 119.99870 * 124.28326 * 11 9 8 14 14 H 1.07994 * 120.00449 * 21.46842 * 13 11 9 15 15 C 1.38812 * 119.99599 * 201.47059 * 13 11 9 16 16 N 1.31623 * 119.99945 * 14.71699 * 15 13 11 17 17 Si 1.86796 * 120.00061 * 194.72158 * 15 13 11 18 18 H 1.48501 * 109.47223 * 89.99648 * 17 15 13 19 19 H 1.48493 * 109.47284 * 209.99741 * 17 15 13 20 20 H 1.48499 * 109.47240 * 329.99988 * 17 15 13 21 21 C 1.47897 * 110.99934 * 169.99883 * 6 5 4 22 22 H 1.08996 * 109.47423 * 296.04874 * 1 2 3 23 23 H 1.08999 * 109.47375 * 56.05217 * 1 2 3 24 24 H 1.09002 * 109.46912 * 176.05059 * 1 2 3 25 25 H 1.08998 * 109.47361 * 183.95074 * 3 2 1 26 26 H 1.09007 * 109.47050 * 303.94993 * 3 2 1 27 27 H 1.09002 * 109.47623 * 63.94771 * 3 2 1 28 28 H 1.09003 * 109.47226 * 306.04614 * 4 2 1 29 29 H 1.08996 * 109.47051 * 186.05022 * 4 2 1 30 30 H 1.09003 * 109.46913 * 59.99804 * 5 4 2 31 31 H 1.08998 * 109.46895 * 299.99930 * 5 4 2 32 32 H 1.08995 * 110.66948 * 318.71839 * 7 6 5 33 33 H 1.09008 * 110.66627 * 81.68060 * 7 6 5 34 34 H 1.09004 * 110.72075 * 279.06455 * 8 7 6 35 35 H 1.08993 * 110.72542 * 155.77057 * 8 7 6 36 36 H 1.09008 * 109.46760 * 91.66151 * 12 11 9 37 37 H 1.09001 * 109.47328 * 211.65814 * 12 11 9 38 38 H 1.08998 * 109.47687 * 331.66355 * 12 11 9 39 39 H 0.97000 * 119.99447 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.92034 * 26.49733 * 21 6 5 41 41 H 1.08999 * 109.92353 * 265.19948 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9705 6 7 2.1583 -3.0086 2.1078 7 6 3.6351 -3.1417 2.0215 8 6 3.9355 -4.3578 2.9335 9 6 2.7420 -5.3006 2.6564 10 1 2.4168 -5.7826 3.5783 11 7 3.1113 -6.3087 1.6595 12 6 3.6190 -5.8921 0.3500 13 6 2.9764 -7.6401 1.9498 14 1 2.3013 -7.9569 2.7309 15 6 3.7076 -8.5827 1.2399 16 7 4.7292 -8.2035 0.5017 17 14 3.2416 -10.3892 1.3323 18 1 2.2642 -10.7038 0.2594 19 1 4.4570 -11.2237 1.1548 20 1 2.6329 -10.6764 2.6560 21 6 1.6284 -4.3893 2.1080 22 1 -0.3634 0.4513 0.9232 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 3.0827 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7043 1.8724 0.9232 28 1 1.5610 -0.3872 2.0629 29 1 3.0796 -0.6610 1.1758 30 1 2.0658 -2.6214 0.0453 31 1 0.5472 -2.3475 0.9325 32 1 3.9439 -3.3443 0.9960 33 1 4.1251 -2.2441 2.3992 34 1 3.9553 -4.0584 3.9814 35 1 4.8751 -4.8309 2.6484 36 1 4.7067 -5.8298 0.3850 37 1 3.3209 -6.6209 -0.4039 38 1 3.2072 -4.9158 0.0943 39 1 5.2399 -8.8621 0.0054 40 1 1.3707 -4.6884 1.0919 41 1 0.7495 -4.4498 2.7498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259338554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:53 Heat of formation + Delta-G solvation = 21.180511 kcal Electronic energy + Delta-G solvation = -18236.777727 eV Core-core repulsion = 15572.882108 eV Total energy + Delta-G solvation = -2663.895619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37169 -38.40151 -36.55347 -33.70267 -31.83131 -29.81193 -28.81214 -28.43353 -27.86771 -25.02839 -24.15497 -22.43816 -21.41487 -20.69420 -18.87309 -17.29201 -17.09589 -16.54631 -16.24622 -15.92767 -15.45602 -15.16205 -15.06720 -14.55555 -14.23746 -13.89961 -13.56448 -13.25367 -13.05510 -12.95477 -12.69978 -12.67019 -12.60392 -12.50960 -12.33964 -12.16367 -12.08174 -11.96556 -11.67662 -11.54063 -11.46577 -10.63686 -9.41960 -9.29769 -8.79412 -7.84757 -5.30239 1.46629 1.48012 1.56776 2.49682 2.76066 3.29317 3.36724 3.72002 3.82890 3.87505 4.15909 4.20785 4.29796 4.40552 4.47764 4.50391 4.59045 4.63535 4.68939 4.70140 4.73270 4.85105 4.91077 4.96904 5.01714 5.02074 5.06270 5.17527 5.22654 5.32966 5.39925 5.61727 5.66180 5.86723 5.97018 6.10530 6.20877 6.33179 7.13999 7.86695 8.31194 9.20167 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045220 B = 0.004803 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.040966 B = 5828.348650 C = 5898.463054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.072 3.928 5 C 0.055 3.945 6 N -0.511 5.511 7 C 0.045 3.955 8 C -0.132 4.132 9 C 0.158 3.842 10 H 0.069 0.931 11 N -0.606 5.606 12 C 0.190 3.810 13 C -0.266 4.266 14 H 0.073 0.927 15 C -0.053 4.053 16 N -0.940 5.940 17 Si 0.969 3.031 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.267 1.267 21 C 0.033 3.967 22 H 0.031 0.969 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.048 0.952 36 H -0.002 1.002 37 H 0.014 0.986 38 H 0.018 0.982 39 H 0.248 0.752 40 H 0.032 0.968 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 16.783 1.371 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.292 5.292 3 C -0.121 4.121 4 C -0.056 4.056 5 C -0.074 4.074 6 N -0.236 5.236 7 C -0.082 4.082 8 C -0.172 4.172 9 C 0.050 3.950 10 H 0.087 0.913 11 N -0.329 5.329 12 C 0.045 3.955 13 C -0.396 4.396 14 H 0.091 0.909 15 C -0.248 4.248 16 N -0.586 5.586 17 Si 0.798 3.202 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.191 1.191 21 C -0.096 4.096 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.576 16.744 1.314 18.036 hybrid contribution 0.103 -1.301 -0.333 1.347 sum -6.472 15.443 0.981 16.773 Atomic orbital electron populations 1.22454 0.86639 1.02395 1.01111 1.61908 1.09020 1.14976 1.43333 1.22399 1.00921 0.87656 1.01152 1.21884 1.00081 0.92127 0.91488 1.22178 1.00063 0.93883 0.91249 1.64764 1.05520 1.12635 1.40640 1.23184 0.88717 0.98422 0.97904 1.22899 0.98606 0.95694 1.00038 1.21384 0.92957 0.89004 0.91656 0.91301 1.44207 1.75586 1.01874 1.11234 1.20346 0.95138 0.93810 0.86218 1.19627 1.18334 0.83190 1.18400 0.90884 1.25749 0.96081 1.02102 1.00845 1.70251 1.19689 1.33723 1.34970 0.85227 0.76682 0.80135 0.78181 1.21454 1.22242 1.19126 1.23306 0.98739 0.87814 0.99788 0.95080 0.90281 0.91760 0.91277 0.90249 0.95108 0.93847 0.91026 0.95690 0.90757 0.95185 0.88875 0.89850 0.93343 0.98383 0.96685 0.96362 0.94332 0.94953 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.32 127.69 1.19 1.59 16 2 N -0.57 -12.16 5.02 -948.86 -4.76 -16.92 16 3 C 0.03 0.44 9.57 127.69 1.22 1.66 16 4 C 0.07 1.69 5.05 86.30 0.44 2.12 16 5 C 0.06 1.52 4.63 86.30 0.40 1.92 16 6 N -0.51 -15.72 5.24 -883.04 -4.63 -20.35 16 7 C 0.05 1.45 5.43 86.65 0.47 1.92 16 8 C -0.13 -4.85 6.33 31.80 0.20 -4.64 16 9 C 0.16 6.50 3.52 45.87 0.16 6.66 16 10 H 0.07 2.83 7.91 -2.39 -0.02 2.81 16 11 N -0.61 -30.83 2.78 -697.86 -1.94 -32.77 16 12 C 0.19 9.73 7.55 127.77 0.97 10.69 16 13 C -0.27 -14.76 9.60 84.03 0.81 -13.95 16 14 H 0.07 3.92 7.84 -2.91 -0.02 3.89 16 15 C -0.05 -3.00 5.04 84.86 0.43 -2.57 16 16 N -0.94 -56.57 10.76 21.65 0.23 -56.33 16 17 Si 0.97 45.57 29.58 68.60 2.03 47.60 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 C 0.03 1.18 5.90 86.45 0.51 1.69 16 22 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 24 H 0.06 1.24 6.47 -2.39 -0.02 1.23 16 25 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 26 H 0.08 1.10 8.12 -2.38 -0.02 1.08 16 27 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 29 H 0.07 1.68 7.29 -2.39 -0.02 1.67 16 30 H 0.02 0.79 7.83 -2.39 -0.02 0.77 16 31 H 0.07 1.97 6.49 -2.39 -0.02 1.95 16 32 H 0.03 1.07 6.15 -2.39 -0.01 1.06 16 33 H 0.09 2.52 7.80 -2.38 -0.02 2.51 16 34 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.05 2.05 7.97 -2.39 -0.02 2.03 16 36 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 37 H 0.01 0.82 7.05 -2.39 -0.02 0.80 16 38 H 0.02 0.83 5.34 -2.39 -0.01 0.82 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.03 1.27 6.64 -2.39 -0.02 1.25 16 41 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -62.47 312.36 -1.31 -63.78 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.97 Total: 7.91 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.79 Total: 7.09 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -11.10 Total: -126.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -62.47 -1.31 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.958 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds