Wall clock time and date at job start Mon Mar 30 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99677 * 2 1 4 4 C 1.46906 * 111.00206 * 123.94817 * 2 1 3 5 5 C 1.52993 * 109.47293 * 170.00692 * 4 2 1 6 6 C 1.52999 * 109.47187 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47321 * 174.72954 * 6 5 4 8 8 C 1.47900 * 111.00212 * 174.71813 * 7 6 5 9 9 C 1.53987 * 107.22465 * 214.25128 * 8 7 6 10 10 C 1.54592 * 105.13939 * 1.12448 * 9 8 7 11 11 H 1.09004 * 110.72488 * 263.41632 * 10 9 8 12 12 N 1.46507 * 110.72391 * 140.31829 * 10 9 8 13 13 C 1.36939 * 120.00181 * 86.45257 * 12 10 9 14 14 H 1.07996 * 120.00052 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99711 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99580 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47227 * 89.99856 * 17 15 13 19 19 H 1.48504 * 109.46886 * 209.99686 * 17 15 13 20 20 H 1.48491 * 109.47219 * 329.99528 * 17 15 13 21 21 C 1.48808 * 111.18720 * 57.37660 * 7 6 5 22 22 H 1.08998 * 109.47725 * 296.04750 * 1 2 3 23 23 H 1.08997 * 109.47063 * 56.05461 * 1 2 3 24 24 H 1.09004 * 109.46830 * 176.04757 * 1 2 3 25 25 H 1.08995 * 109.46944 * 183.94941 * 3 2 1 26 26 H 1.08997 * 109.47173 * 303.95153 * 3 2 1 27 27 H 1.09004 * 109.47181 * 63.95383 * 3 2 1 28 28 H 1.09000 * 109.46611 * 50.00441 * 4 2 1 29 29 H 1.09003 * 109.47036 * 290.00779 * 4 2 1 30 30 H 1.08996 * 109.47184 * 59.99909 * 5 4 2 31 31 H 1.09008 * 109.46682 * 300.00112 * 5 4 2 32 32 H 1.08996 * 109.47251 * 54.72324 * 6 5 4 33 33 H 1.09001 * 109.46956 * 294.72195 * 6 5 4 34 34 H 1.08994 * 109.92142 * 94.79379 * 8 7 6 35 35 H 1.09007 * 109.91622 * 333.70064 * 8 7 6 36 36 H 1.09006 * 110.31185 * 120.04052 * 9 8 7 37 37 H 1.08998 * 110.30901 * 242.10643 * 9 8 7 38 38 H 0.97003 * 119.99661 * 266.45350 * 12 10 9 39 39 H 0.97001 * 120.00087 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.51946 * 41.07351 * 21 7 6 41 41 H 1.09004 * 110.84190 * 278.09475 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.5044 -0.9551 0.9706 6 6 4.0527 -1.7533 2.1551 7 7 5.4755 -2.0436 1.9335 8 6 6.0719 -2.7047 3.1145 9 6 7.5286 -2.2175 3.2227 10 6 7.7096 -1.2230 2.0531 11 1 8.1642 -1.7164 1.1940 12 7 8.5125 -0.0711 2.4716 13 6 9.8791 -0.1285 2.4048 14 1 10.3650 -1.0226 2.0432 15 6 10.6397 0.9627 2.8018 16 7 10.0476 2.0526 3.2420 17 14 12.5039 0.8842 2.7114 18 1 12.9558 1.3677 1.3820 19 1 13.0876 1.7412 3.7744 20 1 12.9503 -0.5186 2.9059 21 6 6.2556 -0.7918 1.7367 22 1 -0.3634 0.4512 0.9232 23 1 -0.3633 0.5738 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 3.0826 1.3433 -0.0708 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8724 0.9233 28 1 1.5090 -1.7406 1.1757 29 1 1.7974 -0.2246 2.0629 30 1 3.9908 0.0196 0.9325 31 1 3.7024 -1.4964 0.0453 32 1 3.5013 -2.6888 2.2492 33 1 3.9389 -1.1709 3.0695 34 1 6.0508 -3.7867 2.9846 35 1 5.5201 -2.4281 4.0130 36 1 7.6894 -1.7139 4.1760 37 1 8.2168 -3.0563 3.1180 38 1 8.0761 0.7321 2.7960 39 1 10.5791 2.8152 3.5191 40 1 5.9229 -0.0210 2.4320 41 1 6.1735 -0.4413 0.7078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259476695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:48 Heat of formation + Delta-G solvation = 18.670565 kcal Electronic energy + Delta-G solvation = -17566.125226 eV Core-core repulsion = 14902.120768 eV Total energy + Delta-G solvation = -2664.004458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.81124 -37.62190 -34.57446 -32.75551 -30.80216 -28.95382 -27.78850 -27.52077 -25.46132 -23.52007 -22.33063 -20.97092 -20.30515 -19.58653 -17.14708 -16.03131 -15.91095 -15.39359 -15.09943 -14.75335 -14.33632 -14.12922 -13.55743 -13.08149 -12.77876 -12.69684 -12.53514 -12.40105 -11.94444 -11.83278 -11.49445 -11.37231 -11.28849 -10.98009 -10.78594 -10.76862 -10.57600 -10.41973 -10.13079 -9.84385 -9.65735 -8.88958 -8.54387 -8.12441 -6.95929 -5.76662 -3.05620 3.44441 3.49602 3.51179 3.73315 4.28006 4.61938 4.80689 4.96980 5.06556 5.16371 5.22822 5.26274 5.37220 5.44975 5.46694 5.48472 5.56512 5.62082 5.64801 5.69357 5.79271 5.82545 5.86092 5.93473 6.14174 6.20093 6.29800 6.36400 6.47222 6.57410 6.81522 6.83641 6.86243 6.99328 7.27919 7.37594 7.72527 8.42131 9.52977 10.10364 10.44915 11.46112 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.004312 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.708403 B = 6491.553361 C = 7148.051252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.057 3.943 5 C -0.115 4.115 6 C 0.051 3.949 7 N -0.517 5.517 8 C 0.039 3.961 9 C -0.153 4.153 10 C 0.178 3.822 11 H 0.061 0.939 12 N -0.721 5.721 13 C -0.238 4.238 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.032 3.968 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.042 0.958 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.486 -5.716 -3.366 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.072 4.072 5 C -0.153 4.153 6 C -0.078 4.078 7 N -0.241 5.241 8 C -0.089 4.089 9 C -0.194 4.194 10 C 0.066 3.934 11 H 0.079 0.921 12 N -0.361 5.361 13 C -0.369 4.369 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.097 4.097 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.123 -6.308 -4.278 18.742 hybrid contribution 0.463 1.213 1.696 2.136 sum -16.660 -5.094 -2.582 17.612 Atomic orbital electron populations 1.22374 0.87555 1.02125 1.00334 1.61975 1.07588 1.14196 1.43398 1.22462 1.01626 0.88488 1.00276 1.22123 0.96104 0.97975 0.90979 1.21607 0.93459 1.00803 0.99442 1.22198 0.89991 0.99131 0.96503 1.64777 1.01410 1.21353 1.36564 1.22815 0.95945 0.99078 0.91068 1.23190 0.93734 1.00403 1.02102 1.21071 0.89167 0.88852 0.94278 0.92131 1.42385 1.03154 1.13368 1.77209 1.19259 0.82494 0.99103 1.36038 0.91064 1.24747 0.97996 0.96243 1.01994 1.69661 1.34245 1.04495 1.49876 0.86181 0.85593 0.77171 0.77211 1.21677 1.21827 1.20729 1.23472 0.94537 0.90694 1.00967 0.95848 0.91444 0.91429 0.90634 0.91508 0.95695 0.90820 0.95032 0.91611 0.90144 0.91116 0.95211 0.91254 0.94651 0.91294 0.92154 0.78310 0.93528 0.93940 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 60.06 0.57 0.78 16 2 N -0.55 -5.83 5.02 -251.26 -1.26 -7.09 16 3 C 0.02 0.20 9.32 60.07 0.56 0.76 16 4 C 0.06 0.59 4.96 -3.82 -0.02 0.57 16 5 C -0.12 -1.39 4.80 -26.74 -0.13 -1.51 16 6 C 0.05 0.66 4.88 -3.82 -0.02 0.64 16 7 N -0.52 -8.02 5.37 -230.22 -1.24 -9.25 16 8 C 0.04 0.61 6.69 -2.76 -0.02 0.59 16 9 C -0.15 -2.83 6.67 -25.38 -0.17 -3.00 16 10 C 0.18 3.67 3.71 -66.07 -0.24 3.43 16 11 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 12 N -0.72 -18.31 5.19 -51.63 -0.27 -18.58 16 13 C -0.24 -6.65 9.98 -15.06 -0.15 -6.80 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 17 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 C 0.03 0.56 4.95 -1.75 -0.01 0.55 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 24 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 25 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.86 5.60 -51.93 -0.29 0.57 16 31 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.39 7.95 -51.93 -0.41 -0.02 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.38 10.30 7.72 -40.82 -0.32 9.99 16 39 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.04 0.78 7.89 -51.93 -0.41 0.37 16 41 H 0.08 1.36 7.80 -51.93 -0.40 0.96 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -29.82 323.30 -9.50 -39.32 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.59 Total: 5.34 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.28 Total: -4.50 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -2.04 Total: -62.50 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.82 -9.50 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259476695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.994 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds