Wall clock time and date at job start Mon Mar 30 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99677 * 2 1 4 4 C 1.46906 * 111.00206 * 123.94817 * 2 1 3 5 5 C 1.52993 * 109.47293 * 170.00692 * 4 2 1 6 6 C 1.52999 * 109.47187 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47321 * 174.72954 * 6 5 4 8 8 C 1.47900 * 111.00212 * 174.71813 * 7 6 5 9 9 C 1.53987 * 107.22465 * 214.25128 * 8 7 6 10 10 C 1.54592 * 105.13939 * 1.12448 * 9 8 7 11 11 H 1.09004 * 110.72488 * 263.41632 * 10 9 8 12 12 N 1.46507 * 110.72391 * 140.31829 * 10 9 8 13 13 C 1.36939 * 120.00181 * 86.45257 * 12 10 9 14 14 H 1.07996 * 120.00052 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99711 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99580 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47227 * 89.99856 * 17 15 13 19 19 H 1.48504 * 109.46886 * 209.99686 * 17 15 13 20 20 H 1.48491 * 109.47219 * 329.99528 * 17 15 13 21 21 C 1.48808 * 111.18720 * 57.37660 * 7 6 5 22 22 H 1.08998 * 109.47725 * 296.04750 * 1 2 3 23 23 H 1.08997 * 109.47063 * 56.05461 * 1 2 3 24 24 H 1.09004 * 109.46830 * 176.04757 * 1 2 3 25 25 H 1.08995 * 109.46944 * 183.94941 * 3 2 1 26 26 H 1.08997 * 109.47173 * 303.95153 * 3 2 1 27 27 H 1.09004 * 109.47181 * 63.95383 * 3 2 1 28 28 H 1.09000 * 109.46611 * 50.00441 * 4 2 1 29 29 H 1.09003 * 109.47036 * 290.00779 * 4 2 1 30 30 H 1.08996 * 109.47184 * 59.99909 * 5 4 2 31 31 H 1.09008 * 109.46682 * 300.00112 * 5 4 2 32 32 H 1.08996 * 109.47251 * 54.72324 * 6 5 4 33 33 H 1.09001 * 109.46956 * 294.72195 * 6 5 4 34 34 H 1.08994 * 109.92142 * 94.79379 * 8 7 6 35 35 H 1.09007 * 109.91622 * 333.70064 * 8 7 6 36 36 H 1.09006 * 110.31185 * 120.04052 * 9 8 7 37 37 H 1.08998 * 110.30901 * 242.10643 * 9 8 7 38 38 H 0.97003 * 119.99661 * 266.45350 * 12 10 9 39 39 H 0.97001 * 120.00087 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.51946 * 41.07351 * 21 7 6 41 41 H 1.09004 * 110.84190 * 278.09475 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.5044 -0.9551 0.9706 6 6 4.0527 -1.7533 2.1551 7 7 5.4755 -2.0436 1.9335 8 6 6.0719 -2.7047 3.1145 9 6 7.5286 -2.2175 3.2227 10 6 7.7096 -1.2230 2.0531 11 1 8.1642 -1.7164 1.1940 12 7 8.5125 -0.0711 2.4716 13 6 9.8791 -0.1285 2.4048 14 1 10.3650 -1.0226 2.0432 15 6 10.6397 0.9627 2.8018 16 7 10.0476 2.0526 3.2420 17 14 12.5039 0.8842 2.7114 18 1 12.9558 1.3677 1.3820 19 1 13.0876 1.7412 3.7744 20 1 12.9503 -0.5186 2.9059 21 6 6.2556 -0.7918 1.7367 22 1 -0.3634 0.4512 0.9232 23 1 -0.3633 0.5738 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 3.0826 1.3433 -0.0708 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8724 0.9233 28 1 1.5090 -1.7406 1.1757 29 1 1.7974 -0.2246 2.0629 30 1 3.9908 0.0196 0.9325 31 1 3.7024 -1.4964 0.0453 32 1 3.5013 -2.6888 2.2492 33 1 3.9389 -1.1709 3.0695 34 1 6.0508 -3.7867 2.9846 35 1 5.5201 -2.4281 4.0130 36 1 7.6894 -1.7139 4.1760 37 1 8.2168 -3.0563 3.1180 38 1 8.0761 0.7321 2.7960 39 1 10.5791 2.8152 3.5191 40 1 5.9229 -0.0210 2.4320 41 1 6.1735 -0.4413 0.7078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259476695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:43 Heat of formation + Delta-G solvation = -2.975296 kcal Electronic energy + Delta-G solvation = -17567.063861 eV Core-core repulsion = 14902.120768 eV Total energy + Delta-G solvation = -2664.943093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12202 -38.53074 -36.28541 -34.23950 -32.52048 -30.27744 -29.18138 -28.48726 -26.55307 -25.43068 -23.45739 -22.02779 -21.55240 -21.07451 -19.21907 -17.27933 -17.02891 -16.59281 -16.35926 -15.85089 -15.62647 -15.52686 -14.94761 -14.66864 -14.37755 -13.89344 -13.72046 -13.26852 -13.07524 -13.05698 -12.76406 -12.65518 -12.63158 -12.40042 -12.35633 -12.18526 -12.03984 -11.87370 -11.68072 -11.49293 -11.37586 -10.94624 -9.38884 -9.32263 -9.03645 -7.95694 -5.25006 1.47476 1.49222 1.57593 2.54462 2.86386 3.15404 3.37170 3.76991 3.89237 3.99126 4.12268 4.22749 4.25774 4.32283 4.38748 4.43683 4.45199 4.52645 4.64662 4.65146 4.71075 4.75740 4.78106 4.81239 5.00564 5.01317 5.01797 5.05053 5.22661 5.28951 5.34576 5.42515 5.50961 5.88915 6.04825 6.09524 6.17823 6.26785 7.32106 8.06268 8.30408 9.27876 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.004312 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.708403 B = 6491.553361 C = 7148.051252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.563 5.563 3 C 0.020 3.980 4 C 0.062 3.938 5 C -0.107 4.107 6 C 0.052 3.948 7 N -0.517 5.517 8 C 0.046 3.954 9 C -0.146 4.146 10 C 0.167 3.833 11 H 0.052 0.948 12 N -0.733 5.733 13 C -0.241 4.241 14 H 0.076 0.924 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.286 1.286 19 H -0.296 1.296 20 H -0.269 1.269 21 C 0.046 3.954 22 H 0.026 0.974 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.372 0.628 39 H 0.251 0.749 40 H 0.033 0.967 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.497 -7.144 -3.601 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.287 5.287 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.145 4.145 6 C -0.076 4.076 7 N -0.242 5.242 8 C -0.082 4.082 9 C -0.187 4.187 10 C 0.057 3.943 11 H 0.070 0.930 12 N -0.372 5.372 13 C -0.372 4.372 14 H 0.093 0.907 15 C -0.267 4.267 16 N -0.621 5.621 17 Si 0.803 3.197 18 H -0.213 1.213 19 H -0.222 1.222 20 H -0.194 1.194 21 C -0.082 4.082 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.204 0.796 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.163 -7.788 -4.528 20.274 hybrid contribution 0.705 1.607 1.733 2.466 sum -17.458 -6.181 -2.795 18.729 Atomic orbital electron populations 1.22428 0.86099 1.02966 1.00880 1.61983 1.09012 1.14251 1.43485 1.22446 1.00880 0.88696 1.00782 1.22060 0.94869 0.98726 0.91016 1.21497 0.94669 0.99652 0.98654 1.22281 0.88324 1.00354 0.96682 1.64825 1.02660 1.19861 1.36818 1.22793 0.93606 1.00222 0.91536 1.23010 0.96367 0.99600 0.99752 1.21276 0.90246 0.88018 0.94738 0.92959 1.42532 1.02860 1.14359 1.77480 1.19621 0.83855 0.99022 1.34751 0.90657 1.25563 1.02481 0.96108 1.02563 1.69816 1.35669 1.05134 1.51502 0.85135 0.80221 0.77511 0.76876 1.21342 1.22215 1.19410 1.23226 0.92904 0.91472 1.00629 0.95507 0.90650 0.90507 0.91959 0.90457 0.95666 0.89454 0.95034 0.93140 0.91064 0.88894 0.95275 0.88964 0.93572 0.93371 0.91694 0.79608 0.94010 0.94890 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.57 127.69 1.22 1.58 16 2 N -0.56 -11.11 5.02 -948.85 -4.76 -15.87 16 3 C 0.02 0.39 9.32 127.69 1.19 1.58 16 4 C 0.06 1.18 4.96 86.30 0.43 1.61 16 5 C -0.11 -2.43 4.80 30.59 0.15 -2.28 16 6 C 0.05 1.23 4.88 86.30 0.42 1.65 16 7 N -0.52 -15.11 5.37 -882.29 -4.73 -19.84 16 8 C 0.05 1.33 6.69 86.44 0.58 1.91 16 9 C -0.15 -5.30 6.67 31.47 0.21 -5.09 16 10 C 0.17 6.90 3.71 46.19 0.17 7.07 16 11 H 0.05 2.24 8.12 -2.38 -0.02 2.22 16 12 N -0.73 -37.88 5.19 -317.25 -1.65 -39.53 16 13 C -0.24 -13.57 9.98 84.03 0.84 -12.74 16 14 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 15 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 16 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 17 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C 0.05 1.62 4.95 86.59 0.43 2.05 16 22 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 23 H 0.07 0.98 8.12 -2.39 -0.02 0.97 16 24 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 25 H 0.06 1.36 6.47 -2.39 -0.02 1.34 16 26 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 27 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 29 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.05 1.30 5.60 -2.39 -0.01 1.29 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 0.71 7.95 -2.39 -0.02 0.69 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.24 7.65 -2.38 -0.02 1.22 16 36 H 0.05 1.94 8.05 -2.38 -0.02 1.92 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.37 20.59 7.72 -92.71 -0.72 19.88 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.03 1.21 7.89 -2.39 -0.02 1.19 16 41 H 0.08 2.71 7.80 -2.39 -0.02 2.70 16 Total: -1.00 -63.22 323.30 -2.48 -65.70 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.26 Total: 27.18 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 6.10 Total: -6.55 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -10.86 Total: -134.86 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -63.22 -2.48 -65.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259476695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.722 kcal (2) G-P(sol) polarization free energy of solvation -63.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds