Wall clock time and date at job start Mon Mar 30 2020 04:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99999 * 2 1 4 4 C 1.46903 * 111.00152 * 123.95062 * 2 1 3 5 5 C 1.53001 * 109.46896 * 66.04609 * 4 2 1 6 6 C 1.53004 * 109.47115 * 174.00063 * 5 4 2 7 7 H 1.09008 * 109.90661 * 306.54656 * 6 5 4 8 8 C 1.53996 * 109.91779 * 185.44338 * 6 5 4 9 9 H 1.09000 * 110.30741 * 358.33983 * 8 6 5 10 10 N 1.46897 * 110.30681 * 120.50470 * 8 6 5 11 11 C 1.54592 * 105.13897 * 239.42037 * 8 6 5 12 12 H 1.09002 * 110.71974 * 96.57805 * 11 8 6 13 13 C 1.50696 * 110.72493 * 219.68279 * 11 8 6 14 14 H 1.07999 * 120.00153 * 353.61839 * 13 11 8 15 15 C 1.37882 * 120.00017 * 173.61393 * 13 11 8 16 16 N 1.31515 * 119.99794 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 119.99832 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46910 * 269.99927 * 17 15 13 19 19 H 1.48497 * 109.47249 * 29.99885 * 17 15 13 20 20 H 1.48502 * 109.47069 * 149.99953 * 17 15 13 21 21 C 1.54936 * 103.08244 * 338.13385 * 11 8 6 22 22 N 1.47896 * 109.91601 * 67.85436 * 6 5 4 23 23 C 1.46900 * 111.00027 * 265.19694 * 22 6 5 24 24 H 1.08999 * 109.47185 * 296.04478 * 1 2 3 25 25 H 1.08997 * 109.47131 * 56.05217 * 1 2 3 26 26 H 1.09005 * 109.46733 * 176.05035 * 1 2 3 27 27 H 1.09005 * 109.46773 * 183.95716 * 3 2 1 28 28 H 1.09000 * 109.46568 * 303.95295 * 3 2 1 29 29 H 1.08993 * 109.46849 * 63.95263 * 3 2 1 30 30 H 1.08999 * 109.47038 * 306.04891 * 4 2 1 31 31 H 1.09005 * 109.47180 * 186.04454 * 4 2 1 32 32 H 1.09005 * 109.46973 * 54.00504 * 5 4 2 33 33 H 1.08993 * 109.47565 * 294.00011 * 5 4 2 34 34 H 1.00901 * 111.00624 * 300.44505 * 10 8 6 35 35 H 1.00902 * 110.99870 * 64.39694 * 10 8 6 36 36 H 0.97004 * 119.99410 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.66609 * 155.75834 * 21 11 8 38 38 H 1.08998 * 110.66544 * 278.88517 * 21 11 8 39 39 H 1.09004 * 109.47407 * 65.11339 * 23 22 6 40 40 H 1.08997 * 109.47236 * 185.11538 * 23 22 6 41 41 H 1.09003 * 109.47501 * 305.11666 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.3048 -3.0619 2.0733 7 1 3.3758 -2.8592 2.0850 8 6 2.0575 -4.5633 1.8367 9 1 1.4344 -4.7097 0.9544 10 7 3.3349 -5.2723 1.6833 11 6 1.3194 -5.0554 3.1027 12 1 0.2418 -5.0712 2.9392 13 6 1.8146 -6.4183 3.5128 14 1 2.5094 -6.9528 2.8820 15 6 1.3806 -6.9830 4.6935 16 7 1.8132 -8.1722 5.0516 17 14 0.1784 -6.0588 5.7843 18 1 0.9313 -5.2201 6.7512 19 1 -0.6858 -5.1911 4.9444 20 1 -0.6661 -7.0305 6.5246 21 6 1.6973 -3.9923 4.1645 22 7 1.7100 -2.7257 3.3850 23 6 2.4972 -1.6922 4.0707 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8723 0.9232 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6610 1.1756 32 1 1.9740 -2.5932 -0.0032 33 1 0.5501 -2.3603 1.0392 34 1 3.8608 -4.9057 0.9040 35 1 3.8750 -5.2326 2.5346 36 1 1.5075 -8.5696 5.8821 37 1 0.9472 -3.9540 4.9545 38 1 2.6843 -4.1969 4.5794 39 1 2.4501 -0.7630 3.5029 40 1 2.0912 -1.5289 5.0690 41 1 3.5345 -2.0178 4.1491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259701281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:40 Heat of formation + Delta-G solvation = -2.276264 kcal Electronic energy + Delta-G solvation = -18627.849420 eV Core-core repulsion = 15962.936640 eV Total energy + Delta-G solvation = -2664.912781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68718 -38.31408 -35.32540 -34.41431 -33.00011 -31.11756 -28.52503 -28.45494 -26.85569 -25.13019 -24.31894 -22.23456 -21.29963 -20.68376 -18.77184 -17.30944 -16.76315 -16.58864 -16.32111 -15.88028 -15.49405 -15.33211 -15.21994 -14.80038 -14.38336 -14.04099 -13.83556 -13.64735 -13.26227 -13.12198 -12.86873 -12.63656 -12.59873 -12.42476 -12.21039 -12.08019 -11.80975 -11.64055 -11.43744 -11.29589 -11.02677 -10.64955 -9.58946 -9.26921 -9.09702 -8.17899 -6.18577 1.30011 1.37023 1.45660 2.37800 2.99983 3.08047 3.16842 3.76249 3.91793 3.95910 4.14717 4.26548 4.28763 4.34206 4.41499 4.43671 4.51636 4.57553 4.63495 4.68166 4.75392 4.77082 4.87656 4.91004 4.97205 5.00739 5.06433 5.13826 5.18299 5.38428 5.54145 5.67456 5.92248 6.08492 6.13994 6.16403 6.39694 6.62285 6.81280 7.05718 7.46181 8.97463 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.006358 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.321319 B = 4402.859380 C = 4664.658926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.561 5.561 3 C 0.024 3.976 4 C 0.063 3.937 5 C -0.087 4.087 6 C 0.046 3.954 7 H 0.054 0.946 8 C 0.106 3.894 9 H 0.077 0.923 10 N -0.829 5.829 11 C 0.010 3.990 12 H 0.027 0.973 13 C -0.489 4.489 14 H 0.071 0.929 15 C 0.013 3.987 16 N -0.950 5.950 17 Si 0.929 3.071 18 H -0.272 1.272 19 H -0.253 1.253 20 H -0.300 1.300 21 C 0.035 3.965 22 N -0.523 5.523 23 C 0.011 3.989 24 H 0.022 0.978 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.337 0.663 35 H 0.339 0.661 36 H 0.261 0.739 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 19.699 -7.542 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.285 5.285 3 C -0.124 4.124 4 C -0.065 4.065 5 C -0.126 4.126 6 C -0.066 4.066 7 H 0.071 0.929 8 C -0.007 4.007 9 H 0.095 0.905 10 N -0.359 5.359 11 C -0.010 4.010 12 H 0.045 0.955 13 C -0.528 4.528 14 H 0.089 0.911 15 C -0.183 4.183 16 N -0.592 5.592 17 Si 0.756 3.244 18 H -0.198 1.198 19 H -0.177 1.177 20 H -0.227 1.227 21 C -0.093 4.093 22 N -0.247 5.247 23 C -0.137 4.137 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.322 18.926 -8.042 20.567 hybrid contribution 0.422 0.813 2.079 2.272 sum 0.100 19.740 -5.963 20.621 Atomic orbital electron populations 1.22425 0.87053 1.02441 1.00603 1.62031 1.08585 1.14574 1.43281 1.22419 1.01005 0.88117 1.00853 1.22187 0.99561 0.93489 0.91259 1.21452 1.00581 0.93684 0.96839 1.23339 0.96619 0.96343 0.90275 0.92855 1.22073 0.91903 0.88675 0.98061 0.90520 1.58735 1.06623 1.61100 1.09399 1.20077 0.95704 0.92928 0.92287 0.95516 1.21343 1.25849 1.00646 1.04931 0.91137 1.25752 0.97732 0.95417 0.99383 1.70039 1.46923 1.17788 1.24445 0.86153 0.80369 0.78239 0.79594 1.19777 1.17723 1.22740 1.23577 0.98741 0.89916 0.97079 1.64657 1.49510 1.07423 1.03096 1.22706 0.95267 0.96091 0.99667 0.95936 0.90330 0.91655 0.90996 0.90379 0.95714 0.94468 0.91060 0.90746 0.92159 0.84959 0.84804 0.93029 0.92891 0.94833 0.89518 0.91733 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.32 127.69 1.19 1.64 16 2 N -0.56 -11.64 5.02 -948.83 -4.76 -16.40 16 3 C 0.02 0.39 9.57 127.69 1.22 1.61 16 4 C 0.06 1.40 3.91 86.30 0.34 1.74 16 5 C -0.09 -2.26 4.43 30.60 0.14 -2.12 16 6 C 0.05 1.39 2.37 45.06 0.11 1.49 16 7 H 0.05 1.54 7.44 -2.38 -0.02 1.52 16 8 C 0.11 3.94 3.66 45.79 0.17 4.11 16 9 H 0.08 2.84 7.69 -2.39 -0.02 2.82 16 10 N -0.83 -30.59 7.52 -165.04 -1.24 -31.84 16 11 C 0.01 0.45 2.38 -10.34 -0.02 0.42 16 12 H 0.03 1.30 7.46 -2.39 -0.02 1.28 16 13 C -0.49 -27.14 8.38 25.60 0.21 -26.92 16 14 H 0.07 4.31 6.77 -2.91 -0.02 4.29 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 17 Si 0.93 45.24 24.40 68.60 1.67 46.91 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.25 -11.76 6.45 99.48 0.64 -11.11 16 20 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 21 C 0.03 1.44 4.71 86.61 0.41 1.84 16 22 N -0.52 -17.51 5.07 -883.51 -4.48 -21.98 16 23 C 0.01 0.30 9.10 127.69 1.16 1.46 16 24 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 26 H 0.06 1.37 6.60 -2.38 -0.02 1.35 16 27 H 0.07 1.07 8.12 -2.38 -0.02 1.05 16 28 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.04 0.88 6.09 -2.39 -0.01 0.87 16 31 H 0.07 1.51 8.06 -2.38 -0.02 1.49 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.06 1.71 6.85 -2.39 -0.02 1.70 16 34 H 0.34 9.98 9.05 -89.69 -0.81 9.16 16 35 H 0.34 13.22 8.43 -89.69 -0.76 12.46 16 36 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.05 2.30 4.81 -2.39 -0.01 2.29 16 38 H 0.03 1.46 7.92 -2.39 -0.02 1.44 16 39 H 0.09 1.97 5.36 -2.39 -0.01 1.96 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.03 0.69 7.96 -2.39 -0.02 0.67 16 Total: -1.00 -63.67 305.66 -3.75 -67.42 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.62 Total: 28.58 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.38 Total: -13.50 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -10.18 Total: -129.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -63.67 -3.75 -67.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds