Wall clock time and date at job start Mon Mar 30 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00425 * 2 1 4 4 C 1.46908 * 110.99335 * 123.95206 * 2 1 3 5 5 C 1.52995 * 109.47001 * 66.04581 * 4 2 1 6 6 C 1.53002 * 109.46750 * 174.79577 * 5 4 2 7 7 H 1.08997 * 110.00982 * 55.78686 * 6 5 4 8 8 C 1.54320 * 109.89108 * 294.66770 * 6 5 4 9 9 H 1.08999 * 110.70457 * 99.92858 * 8 6 5 10 10 N 1.46900 * 110.70472 * 336.86826 * 8 6 5 11 11 C 1.55140 * 103.02245 * 218.31098 * 8 6 5 12 12 H 1.08996 * 110.99151 * 277.52991 * 11 8 6 13 13 C 1.50697 * 110.99343 * 153.74319 * 11 8 6 14 14 H 1.08006 * 120.00038 * 0.02562 * 13 11 8 15 15 C 1.37878 * 120.00350 * 180.02562 * 13 11 8 16 16 N 1.31514 * 119.99497 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00054 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47314 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47149 * 119.99894 * 17 15 13 20 20 H 1.48505 * 109.47139 * 239.99768 * 17 15 13 21 21 C 1.54912 * 101.65053 * 35.65106 * 11 8 6 22 22 N 1.47445 * 109.89042 * 176.90056 * 6 5 4 23 23 C 1.46904 * 110.99872 * 356.14963 * 22 6 5 24 24 H 1.09001 * 109.47304 * 296.05292 * 1 2 3 25 25 H 1.09005 * 109.46276 * 56.05111 * 1 2 3 26 26 H 1.08999 * 109.47495 * 176.04273 * 1 2 3 27 27 H 1.08994 * 109.47533 * 183.94907 * 3 2 1 28 28 H 1.09004 * 109.46848 * 303.95318 * 3 2 1 29 29 H 1.09000 * 109.47138 * 63.94829 * 3 2 1 30 30 H 1.08993 * 109.47021 * 306.04438 * 4 2 1 31 31 H 1.08997 * 109.46720 * 186.04526 * 4 2 1 32 32 H 1.09004 * 109.47319 * 54.80151 * 5 4 2 33 33 H 1.08994 * 109.47569 * 294.79415 * 5 4 2 34 34 H 1.00901 * 110.99995 * 179.97438 * 10 8 6 35 35 H 1.00899 * 111.00192 * 303.95182 * 10 8 6 36 36 H 0.97005 * 119.99437 * 179.97438 * 16 15 13 37 37 H 1.09005 * 110.37353 * 81.76266 * 21 11 8 38 38 H 1.08998 * 110.37328 * 203.98808 * 21 11 8 39 39 H 1.08994 * 109.47496 * 59.60876 * 23 22 6 40 40 H 1.08997 * 109.47589 * 179.61554 * 23 22 6 41 41 H 1.09004 * 109.46754 * 299.61144 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 6 2.2883 -3.0592 2.0851 7 1 1.9973 -2.6639 3.0583 8 6 3.8236 -3.0106 1.9364 9 1 4.2544 -2.2820 2.6232 10 7 4.2017 -2.7023 0.5508 11 6 4.2577 -4.4497 2.3203 12 1 4.3239 -4.5619 3.4025 13 6 5.5635 -4.8134 1.6618 14 1 6.0622 -4.1010 1.0214 15 6 6.1215 -6.0558 1.8768 16 7 5.5144 -6.9231 2.6570 17 14 7.7403 -6.5063 1.0610 18 1 8.2153 -5.3643 0.2392 19 1 8.7498 -6.8199 2.1040 20 1 7.5426 -7.6933 0.1907 21 6 3.0922 -5.2921 1.7446 22 7 1.8836 -4.4728 1.9766 23 6 0.9061 -4.6591 0.8959 24 1 -0.3634 0.4513 0.9232 25 1 -0.3632 0.5740 -0.8526 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9162 -0.8525 29 1 1.7045 1.8723 0.9232 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6612 1.1758 32 1 1.9864 -2.5970 0.0028 33 1 0.5489 -2.3584 1.0250 34 1 5.2050 -2.6690 0.4487 35 1 3.7944 -3.3656 -0.0913 36 1 5.9068 -7.7973 2.8079 37 1 3.2370 -5.4611 0.6775 38 1 3.0149 -6.2431 2.2715 39 1 1.3451 -4.3418 -0.0499 40 1 0.6297 -5.7116 0.8332 41 1 0.0178 -4.0620 1.1026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259701292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:47 Heat of formation + Delta-G solvation = 18.987625 kcal Electronic energy + Delta-G solvation = -18771.388247 eV Core-core repulsion = 16107.397537 eV Total energy + Delta-G solvation = -2663.990709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.26965 -37.03483 -33.63605 -32.52402 -31.12403 -28.60041 -27.51648 -26.75753 -25.48881 -23.49001 -23.23975 -20.89332 -19.58964 -18.28172 -16.43162 -15.97215 -15.37536 -15.01480 -14.77447 -14.63860 -13.97176 -13.83469 -13.40706 -13.18541 -12.70105 -12.45745 -12.29377 -12.15364 -11.63594 -11.59693 -11.32213 -11.10944 -11.02123 -10.88300 -10.61890 -10.55601 -10.33236 -9.97091 -9.76722 -9.53122 -9.00914 -8.49897 -8.16134 -7.59599 -7.42921 -6.10928 -4.15483 3.23760 3.32781 3.34989 4.15401 4.34975 4.87515 5.20261 5.23882 5.28541 5.39746 5.44919 5.49608 5.68195 5.76329 5.77963 5.84463 5.88498 5.92940 5.94258 6.05367 6.09911 6.17412 6.37521 6.48054 6.54554 6.69080 6.71206 6.94943 7.00926 7.23891 7.28233 7.54524 7.58879 7.79849 7.82769 8.00378 8.10997 8.32210 8.38958 8.88083 9.50055 10.98770 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032980 B = 0.006439 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.789012 B = 4347.240863 C = 4889.776076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.027 3.973 4 C 0.065 3.935 5 C -0.110 4.110 6 C 0.076 3.924 7 H 0.070 0.930 8 C 0.072 3.928 9 H 0.068 0.932 10 N -0.826 5.826 11 C 0.018 3.982 12 H 0.040 0.960 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.059 3.941 22 N -0.539 5.539 23 C 0.023 3.977 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.339 0.661 35 H 0.330 0.670 36 H 0.261 0.739 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 10.337 -4.003 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.121 4.121 4 C -0.063 4.063 5 C -0.149 4.149 6 C -0.033 4.033 7 H 0.088 0.912 8 C -0.041 4.041 9 H 0.086 0.914 10 N -0.355 5.355 11 C -0.002 4.002 12 H 0.058 0.942 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.067 4.067 22 N -0.263 5.263 23 C -0.126 4.126 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.325 10.456 -3.781 13.890 hybrid contribution 1.375 -0.793 -0.334 1.622 sum -6.950 9.663 -4.115 12.594 Atomic orbital electron populations 1.22407 0.88449 1.02102 0.99626 1.61977 1.07056 1.13182 1.44399 1.22331 1.01028 0.89162 0.99587 1.22152 1.01623 0.93407 0.89121 1.21883 0.98443 0.93979 1.00598 1.22432 0.94776 0.88570 0.97540 0.91237 1.22603 0.93076 0.98123 0.90275 0.91383 1.59367 1.15805 1.55139 1.05144 1.20374 0.92899 0.89556 0.97411 0.94220 1.21015 1.05642 0.99519 1.29664 0.92235 1.24991 0.97197 0.96598 0.94870 1.69981 1.38824 1.06669 1.36595 0.86568 0.83869 0.78442 0.79289 1.19770 1.21032 1.21106 1.23153 0.87593 0.97810 0.98194 1.63840 1.13937 1.05953 1.42530 1.22469 0.96264 1.00652 0.93229 0.96245 0.92105 0.91291 0.91222 0.92043 0.96316 0.96499 0.88702 0.90172 0.93273 0.84719 0.85801 0.92962 0.95462 0.90446 0.95575 0.92714 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.07 0.56 0.82 16 2 N -0.54 -7.33 5.02 -251.26 -1.26 -8.59 16 3 C 0.03 0.32 9.57 60.06 0.57 0.89 16 4 C 0.06 0.95 4.74 -3.82 -0.02 0.93 16 5 C -0.11 -1.72 2.82 -26.73 -0.08 -1.80 16 6 C 0.08 1.38 3.42 -66.72 -0.23 1.15 16 7 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 8 C 0.07 1.42 3.05 -65.89 -0.20 1.22 16 9 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 10 N -0.83 -15.04 6.59 -3.12 -0.02 -15.06 16 11 C 0.02 0.44 2.76 -89.63 -0.25 0.19 16 12 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.52 -13.33 8.11 -34.44 -0.28 -13.61 16 14 H 0.06 1.48 5.84 -52.48 -0.31 1.17 16 15 C 0.07 1.77 5.37 -17.82 -0.10 1.68 16 16 N -0.88 -24.84 12.53 55.43 0.69 -24.14 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.06 1.37 5.41 -2.30 -0.01 1.35 16 22 N -0.54 -10.64 5.44 -231.56 -1.26 -11.90 16 23 C 0.02 0.38 8.27 60.07 0.50 0.88 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.07 0.81 6.59 -51.93 -0.34 0.47 16 27 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.02 0.25 8.12 -51.93 -0.42 -0.18 16 31 H 0.09 1.52 6.47 -51.93 -0.34 1.18 16 32 H 0.08 1.37 5.31 -51.93 -0.28 1.09 16 33 H 0.05 0.74 5.06 -51.93 -0.26 0.47 16 34 H 0.34 6.39 7.05 -39.29 -0.28 6.11 16 35 H 0.33 6.30 7.41 -39.29 -0.29 6.01 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.03 0.64 7.39 -51.93 -0.38 0.26 16 38 H 0.08 2.01 7.73 -51.93 -0.40 1.61 16 39 H 0.03 0.43 6.55 -51.93 -0.34 0.09 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.85 6.67 -51.93 -0.35 0.50 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -26.59 304.98 -8.72 -35.31 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.92 Total: 10.41 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.47 Total: -6.28 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.85 Total: -59.70 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.59 -8.72 -35.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.301 kcal (2) G-P(sol) polarization free energy of solvation -26.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds