Wall clock time and date at job start Mon Mar 30 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00425 * 2 1 4 4 C 1.46908 * 110.99335 * 123.95206 * 2 1 3 5 5 C 1.52995 * 109.47001 * 66.04581 * 4 2 1 6 6 C 1.53002 * 109.46750 * 174.79577 * 5 4 2 7 7 H 1.08997 * 110.00982 * 55.78686 * 6 5 4 8 8 C 1.54320 * 109.89108 * 294.66770 * 6 5 4 9 9 H 1.08999 * 110.70457 * 99.92858 * 8 6 5 10 10 N 1.46900 * 110.70472 * 336.86826 * 8 6 5 11 11 C 1.55140 * 103.02245 * 218.31098 * 8 6 5 12 12 H 1.08996 * 110.99151 * 277.52991 * 11 8 6 13 13 C 1.50697 * 110.99343 * 153.74319 * 11 8 6 14 14 H 1.08006 * 120.00038 * 0.02562 * 13 11 8 15 15 C 1.37878 * 120.00350 * 180.02562 * 13 11 8 16 16 N 1.31514 * 119.99497 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00054 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47314 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47149 * 119.99894 * 17 15 13 20 20 H 1.48505 * 109.47139 * 239.99768 * 17 15 13 21 21 C 1.54912 * 101.65053 * 35.65106 * 11 8 6 22 22 N 1.47445 * 109.89042 * 176.90056 * 6 5 4 23 23 C 1.46904 * 110.99872 * 356.14963 * 22 6 5 24 24 H 1.09001 * 109.47304 * 296.05292 * 1 2 3 25 25 H 1.09005 * 109.46276 * 56.05111 * 1 2 3 26 26 H 1.08999 * 109.47495 * 176.04273 * 1 2 3 27 27 H 1.08994 * 109.47533 * 183.94907 * 3 2 1 28 28 H 1.09004 * 109.46848 * 303.95318 * 3 2 1 29 29 H 1.09000 * 109.47138 * 63.94829 * 3 2 1 30 30 H 1.08993 * 109.47021 * 306.04438 * 4 2 1 31 31 H 1.08997 * 109.46720 * 186.04526 * 4 2 1 32 32 H 1.09004 * 109.47319 * 54.80151 * 5 4 2 33 33 H 1.08994 * 109.47569 * 294.79415 * 5 4 2 34 34 H 1.00901 * 110.99995 * 179.97438 * 10 8 6 35 35 H 1.00899 * 111.00192 * 303.95182 * 10 8 6 36 36 H 0.97005 * 119.99437 * 179.97438 * 16 15 13 37 37 H 1.09005 * 110.37353 * 81.76266 * 21 11 8 38 38 H 1.08998 * 110.37328 * 203.98808 * 21 11 8 39 39 H 1.08994 * 109.47496 * 59.60876 * 23 22 6 40 40 H 1.08997 * 109.47589 * 179.61554 * 23 22 6 41 41 H 1.09004 * 109.46754 * 299.61144 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 6 2.2883 -3.0592 2.0851 7 1 1.9973 -2.6639 3.0583 8 6 3.8236 -3.0106 1.9364 9 1 4.2544 -2.2820 2.6232 10 7 4.2017 -2.7023 0.5508 11 6 4.2577 -4.4497 2.3203 12 1 4.3239 -4.5619 3.4025 13 6 5.5635 -4.8134 1.6618 14 1 6.0622 -4.1010 1.0214 15 6 6.1215 -6.0558 1.8768 16 7 5.5144 -6.9231 2.6570 17 14 7.7403 -6.5063 1.0610 18 1 8.2153 -5.3643 0.2392 19 1 8.7498 -6.8199 2.1040 20 1 7.5426 -7.6933 0.1907 21 6 3.0922 -5.2921 1.7446 22 7 1.8836 -4.4728 1.9766 23 6 0.9061 -4.6591 0.8959 24 1 -0.3634 0.4513 0.9232 25 1 -0.3632 0.5740 -0.8526 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9162 -0.8525 29 1 1.7045 1.8723 0.9232 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6612 1.1758 32 1 1.9864 -2.5970 0.0028 33 1 0.5489 -2.3584 1.0250 34 1 5.2050 -2.6690 0.4487 35 1 3.7944 -3.3656 -0.0913 36 1 5.9068 -7.7973 2.8079 37 1 3.2370 -5.4611 0.6775 38 1 3.0149 -6.2431 2.2715 39 1 1.3451 -4.3418 -0.0499 40 1 0.6297 -5.7116 0.8332 41 1 0.0178 -4.0620 1.1026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259701292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:46 Heat of formation + Delta-G solvation = -1.352261 kcal Electronic energy + Delta-G solvation = -18772.270250 eV Core-core repulsion = 16107.397537 eV Total energy + Delta-G solvation = -2664.872713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83379 -38.13774 -35.41826 -34.22013 -32.67502 -30.19109 -28.51472 -28.19057 -27.16051 -25.12576 -24.62433 -22.04392 -21.39609 -19.77030 -18.32287 -17.56807 -16.87453 -16.32482 -16.15792 -15.96480 -15.39083 -15.24904 -14.94767 -14.62108 -14.25933 -13.94049 -13.81689 -13.17964 -13.08015 -12.95491 -12.86160 -12.54139 -12.48216 -12.32759 -12.30175 -12.02906 -11.77696 -11.57877 -11.45584 -11.18426 -10.89784 -10.55420 -9.22687 -9.15439 -9.03718 -8.15595 -6.25627 1.39144 1.42362 1.52098 2.40404 3.10713 3.16311 3.36711 3.80215 4.17344 4.21426 4.31050 4.34401 4.40070 4.47780 4.57233 4.59274 4.67737 4.72672 4.78567 4.81319 4.86056 4.89515 5.01525 5.07691 5.08740 5.09415 5.20425 5.40045 5.51654 5.56486 5.70898 5.84287 6.11879 6.21727 6.27282 6.30144 6.41912 6.51154 6.76560 6.88699 7.43113 8.94323 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032980 B = 0.006439 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.789012 B = 4347.240863 C = 4889.776076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.557 5.557 3 C 0.027 3.973 4 C 0.073 3.927 5 C -0.095 4.095 6 C 0.080 3.920 7 H 0.071 0.929 8 C 0.084 3.916 9 H 0.069 0.931 10 N -0.806 5.806 11 C 0.010 3.990 12 H -0.002 1.002 13 C -0.524 4.524 14 H 0.069 0.931 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.079 3.921 22 N -0.549 5.549 23 C 0.024 3.976 24 H 0.023 0.977 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.019 0.981 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.337 0.663 35 H 0.328 0.672 36 H 0.259 0.741 37 H 0.018 0.982 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.054 0.946 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 11.959 -5.361 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.281 5.281 3 C -0.121 4.121 4 C -0.056 4.056 5 C -0.133 4.133 6 C -0.030 4.030 7 H 0.089 0.911 8 C -0.029 4.029 9 H 0.087 0.913 10 N -0.334 5.334 11 C -0.011 4.011 12 H 0.016 0.984 13 C -0.562 4.562 14 H 0.087 0.913 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.781 3.219 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.049 4.049 22 N -0.273 5.273 23 C -0.124 4.124 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.952 12.108 -5.154 15.916 hybrid contribution 1.520 -1.259 0.114 1.977 sum -7.432 10.849 -5.039 14.083 Atomic orbital electron populations 1.22450 0.87220 1.02358 1.00567 1.61953 1.08288 1.14200 1.43628 1.22362 1.00800 0.88328 1.00576 1.21971 1.00817 0.92885 0.89917 1.21708 0.98798 0.94186 0.98633 1.22426 0.93704 0.88019 0.98814 0.91059 1.22456 0.94269 0.95237 0.90935 0.91330 1.59377 1.15566 1.54418 1.04036 1.20343 0.93121 0.92859 0.94773 0.98391 1.21376 1.06204 0.99496 1.29139 0.91322 1.25780 1.00419 0.96799 0.95559 1.70126 1.40439 1.07000 1.38282 0.85552 0.79891 0.78231 0.78216 1.18525 1.21239 1.21192 1.22705 0.88909 0.96603 0.96655 1.63728 1.12898 1.06507 1.44136 1.22529 0.96166 1.01325 0.92395 0.95803 0.90568 0.91491 0.91722 0.90455 0.95786 0.96245 0.90146 0.91166 0.91946 0.84919 0.86029 0.93202 0.96374 0.94182 0.95142 0.92701 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.32 127.69 1.19 1.64 16 2 N -0.56 -13.55 5.02 -948.85 -4.76 -18.31 16 3 C 0.03 0.56 9.57 127.69 1.22 1.78 16 4 C 0.07 1.97 4.74 86.30 0.41 2.38 16 5 C -0.09 -2.74 2.82 30.59 0.09 -2.66 16 6 C 0.08 2.79 3.42 45.26 0.15 2.95 16 7 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 8 C 0.08 3.29 3.05 46.10 0.14 3.43 16 9 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 10 N -0.81 -28.43 6.59 -163.79 -1.08 -29.51 16 11 C 0.01 0.49 2.76 -10.15 -0.03 0.46 16 12 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 13 C -0.52 -27.06 8.11 25.60 0.21 -26.85 16 14 H 0.07 3.36 5.84 -2.91 -0.02 3.34 16 15 C 0.01 0.74 5.37 84.65 0.45 1.20 16 16 N -0.92 -53.24 12.53 21.45 0.27 -52.97 16 17 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 C 0.08 3.72 5.41 86.78 0.47 4.19 16 22 N -0.55 -21.43 5.44 -886.53 -4.83 -26.25 16 23 C 0.02 0.77 8.27 127.69 1.06 1.82 16 24 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 1.30 8.12 -2.38 -0.02 1.28 16 26 H 0.07 1.37 6.59 -2.39 -0.02 1.35 16 27 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 28 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 29 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.02 0.52 8.12 -2.39 -0.02 0.50 16 31 H 0.08 2.42 6.47 -2.39 -0.02 2.41 16 32 H 0.07 2.22 5.31 -2.38 -0.01 2.21 16 33 H 0.06 1.67 5.06 -2.39 -0.01 1.66 16 34 H 0.34 12.26 7.05 -89.69 -0.63 11.63 16 35 H 0.33 12.10 7.41 -89.69 -0.66 11.43 16 36 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 37 H 0.02 0.87 7.39 -2.38 -0.02 0.85 16 38 H 0.04 2.17 7.73 -2.39 -0.02 2.15 16 39 H 0.03 0.95 6.55 -2.39 -0.02 0.94 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 2.21 6.67 -2.38 -0.02 2.19 16 Total: -1.00 -57.42 304.98 -3.29 -60.71 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.28 Total: 31.29 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.36 Total: -9.66 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -10.40 Total: -127.05 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -57.42 -3.29 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.360 kcal (2) G-P(sol) polarization free energy of solvation -57.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds